Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000330.1

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

242275 .. 245429

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000330.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgggtgctatagacatgcctttggttggctcttcttctccgttacctactgaaataatggcagtgcaggctggtctacagtttatcactgatgcagctattctgcctgtgttgccgaaaatggattgcttggaattgttttgtggtgtttgggttgctggcaaggaactggaactagcacagcttgtatcggagcatcaacatgtgttgatggtgctgctagtcaagggattgagctggaatgaatggacagggcgggaagagaacatgaaggctcggactgtgacactgcaactcccagcggaagtaaagccagaagaatttctaatgaaagaacatccacaagaattcatggatgaagaccaagaagaggttaaagatgaaattgctcatgaagacatggttatttgtactgatgaagtcttggagcctaaaataaatcattcagaaccagatgttattcaagagtacaaccttgagagctgtgaagaatctactaaggttgcctataacagactcatctatggtgttgggttcatgattgtgtcatcagaatatgcagaagatccagccaataatccacatgtccaattgtctaattttttctcaggtcttttgtctacctattcttgtcctttattcaagaggaactcgaggaatctttgtttaggtttattgcttgtaaacctagggttagttctgcccgcgtcacagctagatgaagaagaatgtgatgacttagctgcatttctctctgggacatcccattgtattccaagcgccaaaaatgatcatatagaacttggaccttctgtgaaaagctctgaggaaaagcctatgagaagaaaagatgtggacatcaaatctaatgctgcctgcaatttggacatttctgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

299

Amino Acids

33.26

Weight (kDa)

4.48

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	76, 620
AccII	CGCG	1 cut(s)	707
AciI	CCGC	3 cut(s)	256, 302, 705
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	2 cut(s)	320, 347
AfaI	GTAC	2 cut(s)	412, 470
AfiI	CCNNNNNNNGG	2 cut(s)	26, 370
AflIII	ACRYGT	2 cut(s)	202, 583
AgsI	TTSAA	2 cut(s)	464, 643
AluBI	AGCT	7 cut(s)	98, 184, 237, 483, 715, 743, 822
AluI	AGCT	7 cut(s)	98, 184, 237, 483, 715, 743, 822
AlwI	GGATC	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	652
ApeKI	GCWGC	4 cut(s)	95, 217, 743, 872
ApoI	RAATTY	2 cut(s)	320, 347
Asp700I	GAANNNNTTC	1 cut(s)	321
AspA2I	CCTAGG	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	806
AvaI	CYCGRG	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	806
AvrII	CCTAGG	1 cut(s)	688
BbsI	GAAGAC	2 cut(s)	366, 402
BbvI	GCAGC	4 cut(s)	107, 204, 730, 859
BccI	CCATC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	790
BfaI	CTAG	4 cut(s)	176, 221, 689, 716
BfmI	CTRYAG	2 cut(s)	9, 77
BfoI	RGCGCY	1 cut(s)	783
BisI	GCNGC	4 cut(s)	96, 218, 744, 873
BlnI	CCTAGG	1 cut(s)	688
BlsI	GCNGC	4 cut(s)	97, 219, 745, 874
Bme18I	GGWCC	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	652
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	2 cut(s)	82, 205
BpiI	GAAGAC	2 cut(s)	366, 402
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	688
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 370
Bse1I	ACTGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	3 cut(s)	337, 361, 761
BseLI	CCNNNNNNNGG	2 cut(s)	26, 370
BseMII	CTCAG	2 cut(s)	621, 816
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	4 cut(s)	107, 204, 730, 859
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	707
BsiHKCI	CYCGRG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	772
BslI	CCNNNNNNNGG	2 cut(s)	26, 370
BsmFI	GGGAC	1 cut(s)	772
BsoBI	CYCGRG	1 cut(s)	652
Bsp143I	GATC	2 cut(s)	565, 790
BspACI	CCGC	3 cut(s)	256, 302, 705
BspCNI	CTCAG	2 cut(s)	620, 817
BspFNI	CGCG	1 cut(s)	707
BspHI	TCATGA	2 cut(s)	391, 537
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	2 cut(s)	565, 790
BssT1I	CCWWGG	1 cut(s)	688
Bst4CI	ACNGT	2 cut(s)	81, 283
Bst6I	CTCTTC	3 cut(s)	37, 255, 363
BstC8I	GCNNGC	4 cut(s)	69, 160, 705, 877
BstDEI	CTNAG	4 cut(s)	498, 607, 739, 825
BstF5I	GGATG	3 cut(s)	337, 361, 761
BstFNI	CGCG	1 cut(s)	707
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	2 cut(s)	568, 793
BstMBI	GATC	2 cut(s)	565, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 112
BstNSI	RCATGY	3 cut(s)	19, 206, 587
BstSFI	CTRYAG	2 cut(s)	9, 77
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	4 cut(s)	107, 204, 730, 859
BstV2I	GAAGAC	2 cut(s)	366, 402
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	337, 361, 761
BtsI	GCAGTG	2 cut(s)	69, 287
BtsIMutI	CAGTG	3 cut(s)	69, 87, 287
Cac8I	GCNNGC	4 cut(s)	69, 160, 705, 877
CciI	TCATGA	2 cut(s)	391, 537
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	806
CseI	GACGC	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	411, 469
CviAII	CATG	8 cut(s)	16, 203, 268, 352, 392, 400, 538, 584
CviQI	GTAC	2 cut(s)	411, 469
DdeI	CTNAG	4 cut(s)	498, 607, 739, 825
DpnI	GATC	2 cut(s)	567, 792
DpnII	GATC	2 cut(s)	565, 790
Eam1104I	CTCTTC	3 cut(s)	37, 255, 363
EarI	CTCTTC	3 cut(s)	37, 255, 363
Eco130I	CCWWGG	1 cut(s)	688
Eco47I	GGWCC	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	652
EcoRI	GAATTC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	688
FaeI	CATG	8 cut(s)	19, 206, 271, 355, 395, 403, 541, 587
FaqI	GGGAC	1 cut(s)	772
FatI	CATG	8 cut(s)	15, 202, 267, 351, 391, 399, 537, 583
FauI	CCCGC	2 cut(s)	249, 712
FbaI	TGATCA	1 cut(s)	790
FblI	GTMKAC	2 cut(s)	76, 620
Fnu4HI	GCNGC	4 cut(s)	96, 218, 744, 873
FokI	GGATG	3 cut(s)	324, 368, 748
Fsp4HI	GCNGC	4 cut(s)	96, 218, 744, 873
FspBI	CTAG	4 cut(s)	176, 221, 689, 716
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	4 cut(s)	96, 218, 744, 873
GsaI	CCCAGC	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	783
HgaI	GACGC	1 cut(s)	696
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	8 cut(s)	19, 206, 271, 355, 395, 403, 541, 587
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HinfI	GANTC	3 cut(s)	491, 516, 658
Hpy166II	GTNNAC	4 cut(s)	77, 621, 685, 856
Hpy188I	TCNGA	6 cut(s)	193, 279, 448, 553, 826, 895
Hpy188III	TCNNGA	4 cut(s)	392, 464, 538, 643
Hpy8I	GTNNAC	4 cut(s)	77, 621, 685, 856
HpyAV	CCTTC	2 cut(s)	265, 819
HpyCH4III	ACNGT	2 cut(s)	81, 283
HpyCH4V	TGCA	6 cut(s)	67, 95, 292, 560, 746, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 112
HpyF3I	CTNAG	4 cut(s)	498, 607, 739, 825
Hsp92II	CATG	8 cut(s)	19, 206, 271, 355, 395, 403, 541, 587
HspAI	GCGC	1 cut(s)	780
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	565, 790
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	193, 427
Lsp1109I	GCAGC	4 cut(s)	107, 204, 730, 859
LweI	GCATC	2 cut(s)	82, 205
MaeI	CTAG	4 cut(s)	176, 221, 689, 716
MaeIII	GTNAC	3 cut(s)	42, 283, 708
MalI	GATC	2 cut(s)	567, 792
MboI	GATC	2 cut(s)	565, 790
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	565
MluCI	AATT	7 cut(s)	134, 320, 347, 384, 590, 598, 880
MlyI	GAGTC	1 cut(s)	510
MnlI	CCTC	4 cut(s)	364, 639, 648, 820
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	2 cut(s)	375, 898
MslI	CAYNNNNRTG	2 cut(s)	201, 542
MspA1I	CMGCKG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	2 cut(s)	68, 112
NdeII	GATC	2 cut(s)	565, 790
NlaIII	CATG	8 cut(s)	19, 206, 271, 355, 395, 403, 541, 587
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	283, 708
NspI	RCATGY	3 cut(s)	19, 206, 587
PaeR7I	CTCGAG	1 cut(s)	652
PagI	TCATGA	2 cut(s)	391, 537
PciI	ACATGT	2 cut(s)	202, 583
PciSI	GCTCTTC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	491, 658
PkrI	GCNGC	4 cut(s)	97, 219, 745, 874
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PscI	ACATGT	2 cut(s)	202, 583
PspFI	CCCAGC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	806
PspXI	VCTCGAGB	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	2 cut(s)	412, 470
RsaNI	GTAC	2 cut(s)	411, 469
RseI	CAYNNNNRTG	2 cut(s)	201, 542
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	375, 898
SatI	GCNGC	4 cut(s)	96, 218, 744, 873
Sau3AI	GATC	2 cut(s)	565, 790
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	1 cut(s)	510
SfaNI	GCATC	2 cut(s)	82, 205
SfcI	CTRYAG	2 cut(s)	9, 77
Sfr274I	CTCGAG	1 cut(s)	652
SinI	GGWCC	1 cut(s)	806
SlaI	CTCGAG	1 cut(s)	652
SmiMI	CAYNNNNRTG	2 cut(s)	201, 542
SmlI	CTYRAG	2 cut(s)	476, 652
SmoI	CTYRAG	2 cut(s)	476, 652
Sse9I	AATT	7 cut(s)	134, 320, 347, 384, 590, 598, 880
SsiI	CCGC	3 cut(s)	256, 302, 705
SspMI	CTAG	4 cut(s)	176, 221, 689, 716
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	2 cut(s)	81, 283
TaqI	TCGA	1 cut(s)	653
TasI	AATT	7 cut(s)	134, 320, 347, 384, 590, 598, 880
TatI	WGTACW	2 cut(s)	410, 468
TfiI	GAWTC	2 cut(s)	491, 658
Tru1I	TTAA	2 cut(s)	375, 898
Tru9I	TTAA	2 cut(s)	375, 898
TscAI	CASTG	3 cut(s)	69, 94, 294
TseFI	GTSAC	2 cut(s)	283, 708
TseI	GCWGC	4 cut(s)	95, 217, 743, 872
Tsp45I	GTSAC	2 cut(s)	283, 708
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	69, 94, 294
VpaK11BI	GGWCC	1 cut(s)	806
XapI	RAATTY	2 cut(s)	320, 347
XceI	RCATGY	3 cut(s)	19, 206, 587
XhoI	CTCGAG	1 cut(s)	652
XmaJI	CCTAGG	1 cut(s)	688
XmiI	GTMKAC	2 cut(s)	76, 620
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	4 cut(s)	176, 221, 689, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.