Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

8132962 .. 8134280

Gene Structure 1319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08251.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAACCCCTCAAAGCTCCTCCCCACCGAGACTCTAACCCTGGGCTGTCCAATCCTCGACGGCTACCTCGGCGGCGGCATCCCCTGCAACTCCCTCACGGAGCTCATCGCCGAAAGCAGCTGCGGCAAGACCCAATTCTGCCTCCAGCTCACTCTCTTCGCCCAGCTCCCTCCTTCCCACGGCGGCCTCTCCGCCTCCTCTCTTTTCCTCCACTCCGAATTCCCTTTCCCCTTCCGCCGCCTCCGCCATCTCTCCGGTTCCTTCCGCTCCTCACACTCCGATCTCATCTTCACCAACCCTTGCGACGACGTATACGTCAGACCTGTAAATGATGCACGCCAACTGCTCGACTTAATGCCCAAGATAGAGACGCTTGTCGCCGGCGGGAAAACCCGGCTGCCGGTGAGGTTGATTGTGATTGATTCCATTGCCGCATTGTTTCGGAGCGAGTTTGGGAACAATCCCTCGGATCTTAAGAGGAGGTCTTTCTTGTTTTTCAAGATTTCCGGGATGTTGAGACGGTTGGCGAGCAAGTATGGAGTGGCGGTGGTGGTGACCAACCAGGTGGTTGATTTTATGGGGGAAGTGGAGGGGATAAATGGAGTGAGAGTTGGGAATTTGAGGTCATTGTATTCGTCTGGGAGACGGGTTTGTCCTGCTTTGGGATTGGCGTGGTCGAATTGCGTGAATTCGAGGCTGTTCTTGTCTAGAAATGAGGAAATTGTTGGGAGGGAAAATGGTGAGATGAGCAGGCATACAAAGAGGCGACTTGATGTTGTTTTTGCTCCTCATTTGCCACCATCGTCGTGTGAGTTTGTCATCACAGAGTATGGGATGGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

282

Amino Acids

31.05

Weight (kDa)

9.11

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	12 - 191	2.6e-25	Rad51
AAA_25	PF13481	18 - 188	5.9e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	314, 651
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	3 cut(s)	218, 616, 688
AfiI	CCNNNNNNNGG	3 cut(s)	179, 400, 662
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	2 cut(s)	39, 561
AluBI	AGCT	5 cut(s)	16, 103, 120, 148, 166
AluI	AGCT	5 cut(s)	16, 103, 120, 148, 166
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	4 cut(s)	23, 362, 511, 637
AlwI	GGATC	1 cut(s)	477
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	3 cut(s)	117, 120, 397
ApoI	RAATTY	3 cut(s)	218, 616, 688
AsuC2I	CCSGG	2 cut(s)	394, 508
AsuHPI	GGTGA	4 cut(s)	283, 415, 565, 752
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	107, 129, 384
BccI	CCATC	3 cut(s)	255, 808, 829
BceAI	ACGGC	2 cut(s)	76, 196
BciT130I	CCWGG	2 cut(s)	41, 563
BcnI	CCSGG	2 cut(s)	394, 508
BcoDI	GTCTC	4 cut(s)	23, 362, 511, 637
BfaI	CTAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	9 cut(s)	73, 76, 118, 121, 124, 184, 238, 398, 432
BlsI	GCNGC	9 cut(s)	74, 77, 119, 122, 125, 185, 239, 399, 433
Bme1390I	CCNGG	4 cut(s)	41, 394, 508, 563
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	4 cut(s)	41, 394, 508, 563
BmsI	GCATC	2 cut(s)	87, 322
BoxI	GACNNNNGTC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	394, 508
BsaJI	CCNNGG	5 cut(s)	39, 40, 67, 178, 465
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	531, 561, 594, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 400, 662
Bse118I	RCCGGY	2 cut(s)	380, 400
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	41, 563
BseDI	CCNNGG	5 cut(s)	39, 40, 67, 178, 465
BseGI	GGATG	3 cut(s)	78, 516, 840
BseLI	CCNNNNNNNGG	3 cut(s)	179, 400, 662
BseMI	GCAATG	1 cut(s)	426
BseRI	GAGGAG	5 cut(s)	8, 187, 259, 493, 777
BseXI	GCAGC	3 cut(s)	107, 129, 384
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	5 cut(s)	255, 381, 394, 401, 507
BslI	CCNNNNNNNGG	3 cut(s)	179, 400, 662
BsmAI	GTCTC	4 cut(s)	23, 362, 511, 637
BsmBI	CGTCTC	3 cut(s)	362, 511, 637
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	280, 469
BspANI	GGCC	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	477
BspTI	CTTAAG	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	380, 400
BssAI	RCCGGY	2 cut(s)	380, 400
BssECI	CCNNGG	5 cut(s)	39, 40, 67, 178, 465
BssMI	GATC	2 cut(s)	280, 469
BssNAI	GTATAC	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	41, 563
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	337, 382, 529, 752
BstDSI	CCRYGG	1 cut(s)	178
BstEII	GGTNACC	1 cut(s)	553
BstF5I	GGATG	3 cut(s)	78, 516, 840
BstKTI	GATC	2 cut(s)	283, 472
BstMAI	GTCTC	4 cut(s)	23, 362, 511, 637
BstMBI	GATC	2 cut(s)	280, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 84, 123, 243
BstNI	CCWGG	2 cut(s)	41, 563
BstPAI	GACNNNNGTC	1 cut(s)	374
BstPI	GGTNACC	1 cut(s)	553
BstSCI	CCNGG	4 cut(s)	39, 392, 506, 561
BstV1I	GCAGC	3 cut(s)	107, 129, 384
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	78, 516, 840
Cac8I	GCNNGC	4 cut(s)	337, 382, 529, 752
Cfr10I	RCCGGY	2 cut(s)	380, 400
CseI	GACGC	1 cut(s)	379
CsiI	ACCWGGT	1 cut(s)	561
DpnI	GATC	2 cut(s)	282, 471
DpnII	GATC	2 cut(s)	280, 469
DrdI	GACNNNNNNGTC	2 cut(s)	314, 651
DseDI	GACNNNNNNGTC	2 cut(s)	314, 651
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	3 cut(s)	181, 224, 233
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	553
EcoRI	GAATTC	2 cut(s)	218, 688
EcoRII	CCWGG	2 cut(s)	39, 561
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	3 cut(s)	362, 511, 637
FaiI	YATR	6 cut(s)	313, 537, 578, 756, 831, 844
FauI	CCCGC	1 cut(s)	377
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	9 cut(s)	73, 76, 118, 121, 124, 184, 238, 398, 432
FokI	GGATG	2 cut(s)	65, 523
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	9 cut(s)	73, 76, 118, 121, 124, 184, 238, 398, 432
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	9 cut(s)	73, 76, 118, 121, 124, 184, 238, 398, 432
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	5 cut(s)	255, 381, 394, 401, 507
HgaI	GACGC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	31, 422
HpaII	CCGG	5 cut(s)	255, 381, 394, 401, 507
HphI	GGTGA	4 cut(s)	283, 415, 565, 752
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	5 cut(s)	217, 280, 320, 444, 469
Hpy188III	TCNNGA	2 cut(s)	499, 708
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	4 cut(s)	62, 308, 311, 808
HpyAV	CCTTC	3 cut(s)	183, 241, 271
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	2 cut(s)	309, 315
HpyCH4V	TGCA	2 cut(s)	87, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 84, 123, 243
HpySE526I	ACGT	2 cut(s)	309, 315
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	280, 469
LmnI	GCTCC	6 cut(s)	21, 100, 171, 272, 444, 790
Lsp1109I	GCAGC	3 cut(s)	107, 129, 384
LweI	GCATC	2 cut(s)	87, 322
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	2 cut(s)	309, 315
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	2 cut(s)	282, 471
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	280, 469
MboII	GAAGA	2 cut(s)	148, 280
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	6 cut(s)	134, 218, 616, 679, 688, 720
MlyI	GAGTC	1 cut(s)	25
MreI	CGCCGGCG	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	2 cut(s)	353, 474
MslI	CAYNNNNRTG	1 cut(s)	805
MspA1I	CMGCKG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	5 cut(s)	255, 381, 394, 401, 507
MspR9I	CCNGG	4 cut(s)	41, 394, 508, 563
MvaI	CCWGG	2 cut(s)	41, 563
MwoI	GCNNNNNNNGC	4 cut(s)	69, 84, 123, 243
NaeI	GCCGGC	1 cut(s)	382
NciI	CCSGG	2 cut(s)	394, 508
NdeII	GATC	2 cut(s)	280, 469
NgoMIV	GCCGGC	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	553
PasI	CCCWGGG	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	506
PkrI	GCNGC	9 cut(s)	74, 77, 119, 122, 125, 185, 239, 399, 433
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshAI	GACNNNNGTC	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	39, 561
PspEI	GGTNACC	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	2 cut(s)	39, 561
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	805
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	353, 474
SatI	GCNGC	9 cut(s)	73, 76, 118, 121, 124, 184, 238, 398, 432
Sau3AI	GATC	2 cut(s)	280, 469
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	4 cut(s)	41, 394, 508, 563
SduI	GDGCHC	1 cut(s)	105
SexAI	ACCWGGT	1 cut(s)	561
SfaNI	GCATC	2 cut(s)	87, 322
SgrAI	CRCCGGYG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	805
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	6 cut(s)	134, 218, 616, 679, 688, 720
SspMI	CTAG	1 cut(s)	708
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	4 cut(s)	39, 392, 506, 561
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	2 cut(s)	312, 318
TaqI	TCGA	4 cut(s)	57, 348, 677, 692
TasI	AATT	6 cut(s)	134, 218, 616, 679, 688, 720
TauI	GCSGC	6 cut(s)	75, 78, 126, 186, 240, 434
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	353, 474
Tru9I	TTAA	2 cut(s)	353, 474
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	3 cut(s)	117, 120, 397
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	473
XapI	RAATTY	3 cut(s)	218, 616, 688
XbaI	TCTAGA	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.