Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Forward (+)

45505726 .. 45506376

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACCGTGTTCCGGTTGGTGTGGGAAGAAGAAGAGAACGAAGAAGGAGAAGATGCTGATCAAGACCGTAGCTTTTTGGGTTCTTGCGGTAGCTTAGATCGTACTCTAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCTCGCAGGTCCTTTCGTTCTTCGAGATTTCCGGGATGCGAAGTTGTTGGCGAGAAAGTACGGCTTGGCGGTGGTGGTGACGAACCGGGTGGTTGATTTTATGAGGGAAGTAGAGGGGATAAATGGGATGAAAGTTGGGAATTTGAGCTCCTTGCATTCATCCGGAAGACGGGTTTGTCCTGCTTTGGGATTAGCTTGGTCACATTGCGTAAATTCGAGGTTGTTCTTGTCTAGAAATGAGGAGATTGTTGGGAGAGAAAATGATGGGTTGGAGGATGCATATGATGATGTCTCACGTGGGCTAGAGGTGGTCGAACATGCTTGTGGACTTGCAACTCTGCAGATGGGAGATTTTATTTTCAATGTATCACATGGAATTGATAGCTACGGCATTAGGGAGCCACTTGGTGTTTGTCTTTGGGATTTGCCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

191

Amino Acids

21.33

Weight (kDa)

4.89

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	302
AciI	CCGC	2 cut(s)	87, 209
AcsI	RAATTY	2 cut(s)	280, 352
AcvI	CACGTG	1 cut(s)	437
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	103, 200
AfiI	CCNNNNNNNGG	3 cut(s)	12, 309, 326
AgsI	TTSAA	1 cut(s)	502
AluBI	AGCT	5 cut(s)	72, 93, 288, 335, 525
AluI	AGCT	5 cut(s)	72, 93, 288, 335, 525
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	436
Aor13HI	TCCGGA	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	2 cut(s)	280, 352
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	3 cut(s)	136, 173, 227
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	290
BbrPI	CACGTG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	2 cut(s)	398, 478
BceAI	ACGGC	2 cut(s)	217, 544
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	3 cut(s)	136, 173, 227
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	3 cut(s)	107, 372, 443
BfmI	CTRYAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	136, 173, 227
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	3 cut(s)	136, 173, 227
BmsI	GCATC	3 cut(s)	43, 166, 406
BpiI	GAAGAC	1 cut(s)	313
BpuMI	CCSGG	3 cut(s)	136, 173, 227
BsaAI	YACGTR	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	57
BsaWI	WCCGGW	2 cut(s)	12, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 309, 326
Bse3DI	GCAATG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	302
BseGI	GGATG	4 cut(s)	181, 273, 299, 421
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	12, 309, 326
BseMI	GCAATG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	5 cut(s)	13, 136, 172, 226, 303
BslI	CCNNNNNNNGG	3 cut(s)	12, 309, 326
BsmAI	GTCTC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	58, 97
BspACI	CCGC	2 cut(s)	87, 209
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	540
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	343
BssMI	GATC	2 cut(s)	58, 97
Bst4CI	ACNGT	2 cut(s)	7, 68
Bst6I	CTCTTC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	124, 144
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	4 cut(s)	181, 273, 299, 421
BstKTI	GATC	2 cut(s)	61, 100
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	2 cut(s)	58, 97
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	3 cut(s)	134, 171, 225
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	181, 273, 299, 421
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	124, 144
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	102, 199
CviAII	CATG	3 cut(s)	458, 512, 571
CviJI	RGCY	9 cut(s)	72, 93, 139, 204, 288, 335, 442, 525, 541
CviKI_1	RGCY	9 cut(s)	72, 93, 139, 204, 288, 335, 442, 525, 541
CviQI	GTAC	2 cut(s)	102, 199
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	2 cut(s)	60, 99
DpnII	GATC	2 cut(s)	58, 97
DraIII	CACNNNGTG	1 cut(s)	548
DrdI	GACNNNNNNGTC	1 cut(s)	315
DseDI	GACNNNNNNGTC	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	3 cut(s)	461, 515, 574
FaiI	YATR	6 cut(s)	242, 421, 423, 459, 513, 572
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	3 cut(s)	457, 511, 570
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	4 cut(s)	188, 280, 286, 428
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	3 cut(s)	107, 372, 443
GluI	GCNGC	1 cut(s)	140
HapII	CCGG	5 cut(s)	13, 136, 172, 226, 303
Hin1II	CATG	3 cut(s)	461, 515, 574
HpaII	CCGG	5 cut(s)	13, 136, 172, 226, 303
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188III	TCNNGA	5 cut(s)	62, 107, 164, 303, 372
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	7, 68
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	4 cut(s)	295, 419, 473, 481
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	3 cut(s)	461, 515, 574
Kpn2I	TCCGGA	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	58, 97
LmnI	GCTCC	2 cut(s)	293, 538
LpnPI	CCDG	8 cut(s)	26, 112, 132, 149, 185, 239, 316, 333
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	3 cut(s)	43, 166, 406
MaeI	CTAG	3 cut(s)	107, 372, 443
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	217, 339
MalI	GATC	2 cut(s)	60, 99
MboI	GATC	2 cut(s)	58, 97
MboII	GAAGA	7 cut(s)	38, 41, 44, 53, 62, 152, 318
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	3 cut(s)	280, 352, 516
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	237, 247, 351, 373, 406, 439
Mph1103I	ATGCAT	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	5 cut(s)	13, 136, 172, 226, 303
MspR9I	CCNGG	3 cut(s)	136, 173, 227
Mva1269I	GAATGC	1 cut(s)	295
NciI	CCSGG	3 cut(s)	136, 173, 227
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	2 cut(s)	58, 97
NlaIII	CATG	3 cut(s)	461, 515, 574
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	217, 339
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	461
PctI	GAATGC	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
Ppu21I	YACGTR	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	483
RsaI	GTAC	2 cut(s)	103, 200
RsaNI	GTAC	2 cut(s)	102, 199
RseI	CAYNNNNRTG	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	290
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	58, 97
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	136, 173, 227
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	9 cut(s)	74, 95, 151, 290, 337, 362, 439, 450, 527
SfaNI	GCATC	3 cut(s)	43, 166, 406
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	3 cut(s)	280, 352, 516
SsiI	CCGC	2 cut(s)	87, 209
SspMI	CTAG	3 cut(s)	107, 372, 443
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	134, 171, 225
TaaI	ACNGT	2 cut(s)	7, 68
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	163, 356, 453
TasI	AATT	3 cut(s)	280, 352, 516
TseFI	GTSAC	2 cut(s)	217, 339
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	2 cut(s)	217, 339
TspDTI	ATGAA	2 cut(s)	284, 288
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	2 cut(s)	280, 352
XbaI	TCTAGA	2 cut(s)	106, 371
XceI	RCATGY	1 cut(s)	461
XspI	CTAG	3 cut(s)	107, 372, 443
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.