Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Forward (+)

30713085 .. 30714983

Gene Structure 1899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1167000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGACACCAGAAAATCTCCTAACCCGTCCTCCCATCGCCGATAAATTAACGCTGGGCTGCCCAGTCCTCGACCGCTGCCTCGGTGGCGGCGTCCCCTGCTGTTCAATAATGGAGCTTGTAGCTGAAAGCAGTTGCGGCAAGACTCAATTTTGCCTCCAACTCGCCCTCTCCGCTCAGCTCCCGCCCTCCCACGGCGGCCTCTCCGCCTCCTCCCTTTACCTCCACACCGAGTTCCCTTTCCCCTTTCGCCGCCTCCACCAACTCTCCCAAGCATTTCGCTCCTCACACCCACACCTCGTAGCCATTAACCCCTGTGAAGATGTGTATGTTGATAGTGTGCACGACGCATACCAGATGCTTGATATCATGCCAAAGATAGAGTCTTTCGTTGAAAGTGCAAAAACCCGGTTGCCTGTCAGGCTAATTCTGATTGATTCCATCGCGGCGCTGTTCCGGACTGAATTTAACAACACCCCTTTGGATCTTAAGCGGAGGTCGTCGCTGTTTTTCAAGATTTCCGGGAAGTTGAAGTCATTAGCGAATAGGTTCCGGGTGGCAGTGGTGGTGACGAACCAGGTGGTTGATTTTATGGGGGCAAGTGATGGGGTAAATGGAGTCAAAGTGGGCAACTTTGGCTCATTGCACTCTTCTGGAAGGCGGGTTTGCCCTGCTTTGGGACTTGCTTGGGCAAATTGCGTGAATTCGAGGGTCTTCTTGTCGAGAAATGAGGTGGTTGTTGCCGAAGGGAATAGTAATGAGCTGGAGGATGGTCTTTGTAGGCAAACAAAGAGGCGACTTGATATTCTTTTTGCGCCTCATTTGCCCCAAGCATCGTGTGAATTTGTCATCACACGCCAAGGAGTGTTTGGAGTTGAATTTCTGAAACATGATATTTGGGTTACACCATACGCATGTGATAAGATGTTTCCTGGAGGAGAGTTTTCAAATCAGAATTTGCGTGTTGGTGAAGGGCAAAGGCGTATTGCCCATACATTGAGTTTCGTGGAAATGGTGGGATATGGAGATCCAAATGATCAACATTACAGAAATGTTGATGTTGGGGATGGGGATGATGTCCTTGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

363

Amino Acids

40.01

Weight (kDa)

6.82

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	15 - 199	2.3e-27	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	1 cut(s)	443
AccIII	TCCGGA	1 cut(s)	453
AclWI	GGATC	2 cut(s)	489, 1019
AcsI	RAATTY	5 cut(s)	461, 700, 839, 875, 952
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	191, 673, 674
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	105, 392, 511, 529, 875, 945
AjnI	CCWGG	2 cut(s)	573, 928
AluBI	AGCT	4 cut(s)	115, 122, 178, 760
AluI	AGCT	4 cut(s)	115, 122, 178, 760
Alw21I	GWGCWC	1 cut(s)	342
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	489, 1019
Aor13HI	TCCGGA	1 cut(s)	453
AoxI	GGCC	1 cut(s)	196
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	57, 75
ApoI	RAATTY	5 cut(s)	461, 700, 839, 875, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
Asp700I	GAANNNNTTC	1 cut(s)	545
AspLEI	GCGC	2 cut(s)	448, 814
AsuC2I	CCSGG	3 cut(s)	406, 520, 551
AsuHPI	GGTGA	2 cut(s)	577, 977
BaeGI	GKGCMC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	44, 62
BccI	CCATC	6 cut(s)	41, 446, 596, 761, 1058, 1077
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	575, 930
BclI	TGATCA	1 cut(s)	1033
BcnI	CCSGG	3 cut(s)	406, 520, 551
BfoI	RGCGCY	1 cut(s)	449
BfrI	CTTAAG	1 cut(s)	485
BglI	GCCNNNNNGGC	2 cut(s)	84, 418
BisI	GCNGC	7 cut(s)	58, 76, 88, 136, 196, 250, 444
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	7 cut(s)	59, 77, 89, 137, 197, 251, 445
Bme1390I	CCNGG	5 cut(s)	406, 520, 551, 575, 930
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	5 cut(s)	406, 520, 551, 575, 930
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	345, 839
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	703
BpmI	CTGGAG	2 cut(s)	782, 951
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	3 cut(s)	406, 520, 551
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	79, 190, 856, 1078
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	6 cut(s)	13, 43, 248, 278, 606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 673, 674
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	638
BseAI	TCCGGA	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	575, 930
BseDI	CCNNGG	4 cut(s)	79, 190, 856, 1078
BseGI	GGATG	4 cut(s)	772, 1069, 1075, 1088
BseLI	CCNNNNNNNGG	3 cut(s)	191, 673, 674
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	3 cut(s)	199, 271, 948
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	44, 62
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	406, 454, 519, 550
BslFI	GGGAC	2 cut(s)	77, 690
BslI	CCNNNNNNNGG	3 cut(s)	191, 673, 674
BsmFI	GGGAC	2 cut(s)	77, 690
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	453
Bsp143I	GATC	3 cut(s)	481, 1024, 1033
Bsp1720I	GCTNAGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	489, 1019
BspTI	CTTAAG	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	79, 190, 856, 1078
BssMI	GATC	3 cut(s)	481, 1024, 1033
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	856, 1078
Bst2UI	CCWGG	2 cut(s)	575, 930
Bst6I	CTCTTC	1 cut(s)	652
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	772, 1069, 1075, 1088
BstFNI	CGCG	1 cut(s)	443
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 814
BstKTI	GATC	3 cut(s)	484, 1027, 1036
BstMBI	GATC	3 cut(s)	481, 1024, 1033
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 96, 135, 170, 418, 633, 820
BstNI	CCWGG	2 cut(s)	575, 930
BstNSI	RCATGY	1 cut(s)	915
BstSCI	CCNGG	5 cut(s)	404, 518, 549, 573, 928
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	44, 62
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	2 cut(s)	481, 1024
BstYI	RGATCY	2 cut(s)	481, 1024
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	2 cut(s)	19, 424
BtsCI	GGATG	4 cut(s)	772, 1069, 1075, 1088
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
CfoI	GCGC	2 cut(s)	448, 814
CseI	GACGC	2 cut(s)	79, 353
CsiI	ACCWGGT	1 cut(s)	573
CviAII	CATG	3 cut(s)	367, 887, 912
CviJI	RGCY	9 cut(s)	57, 115, 122, 178, 198, 302, 421, 636, 760
CviKI_1	RGCY	9 cut(s)	57, 115, 122, 178, 198, 302, 421, 636, 760
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	483, 1026, 1035
DpnII	GATC	3 cut(s)	481, 1024, 1033
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	856, 1078
Eco32I	GATATC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	573, 928
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	856, 1078
ErhI	CCWWGG	2 cut(s)	856, 1078
FaeI	CATG	3 cut(s)	370, 890, 915
FaiI	YATR	9 cut(s)	327, 349, 368, 590, 888, 907, 913, 990, 1020
FaqI	GGGAC	2 cut(s)	77, 690
FatI	CATG	3 cut(s)	366, 886, 911
FauI	CCCGC	2 cut(s)	189, 651
FbaI	TGATCA	1 cut(s)	1033
Fnu4HI	GCNGC	7 cut(s)	58, 76, 88, 136, 196, 250, 444
FokI	GGATG	3 cut(s)	779, 1076, 1082
Fsp4HI	GCNGC	7 cut(s)	58, 76, 88, 136, 196, 250, 444
GlaI	GCGC	2 cut(s)	447, 813
GluI	GCNGC	7 cut(s)	58, 76, 88, 136, 196, 250, 444
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	2 cut(s)	782, 951
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	4 cut(s)	406, 454, 519, 550
HgaI	GACGC	2 cut(s)	79, 353
HhaI	GCGC	2 cut(s)	448, 814
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	370, 890, 915
Hin6I	GCGC	2 cut(s)	446, 812
HinP1I	GCGC	2 cut(s)	446, 812
HinfI	GANTC	4 cut(s)	142, 380, 434, 615
HpaII	CCGG	4 cut(s)	406, 454, 519, 550
HphI	GGTGA	2 cut(s)	577, 977
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	429, 882, 951
Hpy188III	TCNNGA	4 cut(s)	454, 511, 651, 720
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	2 cut(s)	347, 502
HpyAV	CCTTC	3 cut(s)	648, 737, 962
HpyCH4V	TGCA	3 cut(s)	340, 398, 643
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 96, 135, 170, 418, 633, 820
HpyF3I	CTNAG	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	370, 890, 915
HspAI	GCGC	2 cut(s)	446, 812
Kpn2I	TCCGGA	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	1033
Kzo9I	GATC	3 cut(s)	481, 1024, 1033
LmnI	GCTCC	3 cut(s)	112, 183, 284
Lsp1109I	GCAGC	2 cut(s)	44, 62
LweI	GCATC	2 cut(s)	345, 839
MabI	ACCWGGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	565, 898
MalI	GATC	3 cut(s)	483, 1026, 1035
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	3 cut(s)	481, 1024, 1033
MboII	GAAGA	3 cut(s)	329, 639, 703
MflI	RGATCY	2 cut(s)	481, 1024
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	9 cut(s)	44, 146, 423, 461, 691, 700, 839, 875, 952
MlyI	GAGTC	3 cut(s)	136, 389, 624
MmeI	TCCRAC	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	453
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	4 cut(s)	47, 306, 465, 486
MslI	CAYNNNNRTG	1 cut(s)	910
MspA1I	CMGCKG	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	4 cut(s)	406, 454, 519, 550
MspR9I	CCNGG	5 cut(s)	406, 520, 551, 575, 930
MvaI	CCWGG	2 cut(s)	575, 930
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	7 cut(s)	84, 96, 135, 170, 418, 633, 820
NciI	CCSGG	3 cut(s)	406, 520, 551
NdeII	GATC	3 cut(s)	481, 1024, 1033
NlaIII	CATG	3 cut(s)	370, 890, 915
NlaIV	GGNNCC	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	565
NspI	RCATGY	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	434
PfoI	TCCNGGA	2 cut(s)	518, 928
PkrI	GCNGC	7 cut(s)	59, 77, 89, 137, 197, 251, 445
PleI	GAGTC	3 cut(s)	136, 388, 623
PpsI	GAGTC	3 cut(s)	136, 388, 623
Psp6I	CCWGG	2 cut(s)	573, 928
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	573, 928
PspN4I	GGNNCC	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	481, 1024
RseI	CAYNNNNRTG	1 cut(s)	910
SaqAI	TTAA	4 cut(s)	47, 306, 465, 486
SatI	GCNGC	7 cut(s)	58, 76, 88, 136, 196, 250, 444
Sau3AI	GATC	3 cut(s)	481, 1024, 1033
SchI	GAGTC	3 cut(s)	136, 389, 624
ScrFI	CCNGG	5 cut(s)	406, 520, 551, 575, 930
SduI	GDGCHC	1 cut(s)	342
SexAI	ACCWGGT	1 cut(s)	573
SfaNI	GCATC	2 cut(s)	345, 839
SmiMI	CAYNNNNRTG	1 cut(s)	910
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	9 cut(s)	44, 146, 423, 461, 691, 700, 839, 875, 952
StyD4I	CCNGG	5 cut(s)	404, 518, 549, 573, 928
StyI	CCWWGG	2 cut(s)	856, 1078
TaqI	TCGA	3 cut(s)	69, 704, 719
TasI	AATT	9 cut(s)	44, 146, 423, 461, 691, 700, 839, 875, 952
TauI	GCSGC	5 cut(s)	90, 138, 198, 252, 446
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	4 cut(s)	47, 306, 465, 486
Tru9I	TTAA	4 cut(s)	47, 306, 465, 486
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	2 cut(s)	57, 75
Tsp45I	GTSAC	1 cut(s)	565
TspRI	CASTG	1 cut(s)	564
Vha464I	CTTAAG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	338
XapI	RAATTY	5 cut(s)	461, 700, 839, 875, 952
XceI	RCATGY	1 cut(s)	915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	863
XmnI	GAANNNNTTC	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.