Rroxscaffold_5G00347180

DNA repair protein XRCC3 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
18370154 .. 18372936
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347180.1

Sequence Viewer

Length: 1032 bp
ATGGGAGAGAGAGAAACCATAGGAGACTTCGTCGAGCCCGATCACCGGCCACCGGATTTCAGCCAACTTCCTGCGGCAAGACCCAATTCTGCCTCCAACTCACTCTCTTCGCTCAGCTCCCGCCTTCCCACGGCGGCCTCTCCGCCTCCTCTCTTTACCTCCACACAGAATTCCCTTTCCCCTTTCGCCGCCTTCGACACCTCTCCCCACTCCTTCCGCTCCTCCCACGCCAATCTTATCCTCTCCAACCCTTGTGAAGATGTATACGTTCACGCTGTACACGATGCACACCACCTGCTCGACATAATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCCTGTGAGGCTAATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGGAACAACCCTTTGGATCTTAAGCGCAGGTCCTTTCTGTTCTTCGAGATTTCCGGGATGCTGAAGTTGTTGGCGAGAAAGTACAGCTTGGCGGTGGTGGTGACGAACCAGGTGGTTGATTTTATGGGGGAAGTAGAGGGGATAAATGGGATGAAAGTTGGGAATTTGAGCTCCTTGCATTCATCCGGAAGACGGGTTTGTCCTGCTTTGGGATTAGCTTGGTCACATTGCGTAAATTCGAGGTTGTTCTTGTCTAGAAATGAGGAGATTGTTGGGAGAGAAAATGATGGGTTGGAGGATGATATGTGCAGGCAAACAAGAAGGCGCCTTGATGTTGTTTTTTGCTCCTCATTTGCCGCCATCGTCGTGCGTAATTTTCAAGTTCTGCCCGACTGTCACAGCGGATGTGAATTTCAGGATTCTGATGCTCTTCATCGCCACTCTTCCTCTCTCTTGGATTTGATGGCAAGCAAATTGAGTTTTGTAAAATTGAATCTTGGTATTAAGTTTTGTGGTGTTTGGGTTGCTGGCAAGGAACTGGAACAGGCGGCATTCCTAGCACAGCTTGAATCGGTGCATCAAAATGTGTTTGATGGTGCTGCTAGTCAAGGGATTGAGCTGGAATGA

Protein Analysis

343

Amino Acids

37.85

Weight (kDa)

6.23

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 88 - 176 1.1e-07 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 303
AasI GACNNNNNNGTC 1 cut(s) 603
Acc36I ACCTGC 2 cut(s) 303, 423
AccB1I GGYRCC 1 cut(s) 729
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 590
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 5 cut(s) 169, 401, 568, 640, 815
AcuI CTGAAG 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 730
AfaI GTAC 2 cut(s) 279, 488
AfiI CCNNNNNNNGG 5 cut(s) 45, 52, 130, 597, 614
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 3 cut(s) 785, 898, 974
AjnI CCWGG 1 cut(s) 513
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 6 cut(s) 117, 492, 576, 623, 970, 1024
AluI AGCT 6 cut(s) 117, 492, 576, 623, 970, 1024
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 429
Aor13HI TCCGGA 1 cut(s) 590
AoxI GGCC 2 cut(s) 47, 135
ApeKI GCWGC 3 cut(s) 349, 396, 1004
ApoI RAATTY 5 cut(s) 169, 401, 568, 640, 815
AspLEI GCGC 2 cut(s) 432, 732
AspS9I GGNCC 1 cut(s) 435
AsuC2I CCSGG 2 cut(s) 346, 460
AsuHPI GGTGA 2 cut(s) 35, 517
AvaII GGWCC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 729
BanII GRGCYC 2 cut(s) 39, 578
BbsI GAAGAC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 3 cut(s) 336, 408, 991
BccI CCATC 4 cut(s) 686, 773, 862, 992
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 515
BcnI CCSGG 2 cut(s) 346, 460
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 3 cut(s) 660, 962, 1008
BfoI RGCGCY 1 cut(s) 733
BfrI CTTAAG 1 cut(s) 425
BfuAI ACCTGC 2 cut(s) 303, 423
BglI GCCNNNNNGGC 1 cut(s) 358
BisI GCNGC 9 cut(s) 75, 135, 189, 350, 384, 397, 762, 954, 1005
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 9 cut(s) 76, 136, 190, 351, 385, 398, 763, 955, 1006
Bme1390I CCNGG 3 cut(s) 346, 460, 515
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 731
BmrFI CCNGG 3 cut(s) 346, 460, 515
BmsI GCATC 4 cut(s) 274, 453, 820, 991
BpiI GAAGAC 1 cut(s) 601
Bpu1102I GCTNAGC 1 cut(s) 113
BpuMI CCSGG 2 cut(s) 346, 460
BsaHI GRCGYC 1 cut(s) 730
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 2 cut(s) 52, 590
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 52, 130, 597, 614
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 948
Bse3DI GCAATG 2 cut(s) 378, 631
BseAI TCCGGA 1 cut(s) 590
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 5 cut(s) 468, 561, 587, 709, 815
BseLI CCNNNNNNNGG 5 cut(s) 45, 52, 130, 597, 614
BseMI GCAATG 2 cut(s) 378, 631
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 948
BseRI GAGGAG 4 cut(s) 138, 211, 683, 742
BseXI GCAGC 3 cut(s) 336, 408, 991
BsgI GTGCAG 1 cut(s) 733
BshFI GGCC 2 cut(s) 49, 137
BshNI GGYRCC 1 cut(s) 729
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 5 cut(s) 46, 53, 346, 459, 591
BslI CCNNNNNNNGG 5 cut(s) 45, 52, 130, 597, 614
BsmAI GTCTC 1 cut(s) 18
BsmI GAATGC 2 cut(s) 583, 956
BsnI GGCC 2 cut(s) 49, 137
Bsp1286I GDGCHC 2 cut(s) 39, 578
Bsp13I TCCGGA 1 cut(s) 590
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 40, 421
Bsp1720I GCTNAGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 49, 137
BspCNI CTCAG 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 590
BspLI GGNNCC 1 cut(s) 731
BspMI ACCTGC 2 cut(s) 303, 423
BspPI GGATC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 840
BspT107I GGYRCC 1 cut(s) 729
BspTI CTTAAG 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 378, 631
BsrFI RCCGGY 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 1 cut(s) 948
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 40, 421
BssNAI GTATAC 1 cut(s) 265
BssNI GRCGYC 1 cut(s) 730
Bst1107I GTATAC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 800
Bst6I CTCTTC 3 cut(s) 112, 840, 853
BstACI GRCGYC 1 cut(s) 730
BstAFI CTTAAG 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 4 cut(s) 334, 716, 874, 934
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 5 cut(s) 468, 561, 587, 709, 815
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 2 cut(s) 432, 732
BstKTI GATC 2 cut(s) 43, 424
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 40, 421
BstMWI GCNNNNNNNGC 2 cut(s) 358, 962
BstNI CCWGG 1 cut(s) 515
BstSCI CCNGG 3 cut(s) 344, 458, 513
BstV1I GCAGC 3 cut(s) 336, 408, 991
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BstZ17I GTATAC 1 cut(s) 265
BsuRI GGCC 2 cut(s) 49, 137
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 824
BtsCI GGATG 5 cut(s) 468, 561, 587, 709, 815
BveI ACCTGC 2 cut(s) 303, 423
Cac8I GCNNGC 4 cut(s) 334, 716, 874, 934
CfoI GCGC 2 cut(s) 432, 732
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 435
CsiI ACCWGGT 1 cut(s) 513
Csp6I GTAC 2 cut(s) 278, 487
CviQI GTAC 2 cut(s) 278, 487
DdeI CTNAG 1 cut(s) 113
DinI GGCGCC 1 cut(s) 731
DpnI GATC 2 cut(s) 42, 423
DpnII GATC 2 cut(s) 40, 421
DrdI GACNNNNNNGTC 1 cut(s) 603
DseDI GACNNNNNNGTC 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 3 cut(s) 112, 840, 853
EarI CTCTTC 3 cut(s) 112, 840, 853
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 576
Eco24I GRGCYC 2 cut(s) 39, 578
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 39, 578
EgeI GGCGCC 1 cut(s) 731
EheI GGCGCC 1 cut(s) 731
FaiI YATR 5 cut(s) 20, 265, 305, 530, 710
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 9 cut(s) 75, 135, 189, 350, 384, 397, 762, 954, 1005
FokI GGATG 5 cut(s) 475, 568, 574, 716, 822
FriOI GRGCYC 2 cut(s) 39, 578
Fsp4HI GCNGC 9 cut(s) 75, 135, 189, 350, 384, 397, 762, 954, 1005
FspBI CTAG 3 cut(s) 660, 962, 1008
GlaI GCGC 2 cut(s) 431, 731
GluI GCNGC 9 cut(s) 75, 135, 189, 350, 384, 397, 762, 954, 1005
HaeII RGCGCY 1 cut(s) 733
HaeIII GGCC 2 cut(s) 49, 137
HapII CCGG 5 cut(s) 46, 53, 346, 459, 591
HhaI GCGC 2 cut(s) 432, 732
Hin1I GRCGYC 1 cut(s) 730
Hin6I GCGC 2 cut(s) 430, 730
HinP1I GCGC 2 cut(s) 430, 730
HinfI GANTC 4 cut(s) 374, 824, 898, 974
HpaII CCGG 5 cut(s) 46, 53, 346, 459, 591
HphI GGTGA 2 cut(s) 35, 517
Hpy166II GTNNAC 3 cut(s) 265, 271, 280
Hpy188I TCNGA 1 cut(s) 829
Hpy188III TCNNGA 4 cut(s) 451, 591, 660, 821
Hpy8I GTNNAC 3 cut(s) 265, 271, 280
Hpy99I CGWCG 2 cut(s) 35, 773
HpyAV CCTTC 4 cut(s) 134, 202, 223, 720
HpyCH4III ACNGT 1 cut(s) 800
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 4 cut(s) 287, 583, 714, 982
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 962
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 730
HspAI GCGC 2 cut(s) 430, 730
KasI GGCGCC 1 cut(s) 729
Kpn2I TCCGGA 1 cut(s) 590
Kzo9I GATC 2 cut(s) 40, 421
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 4 cut(s) 122, 224, 581, 755
Lsp1109I GCAGC 3 cut(s) 336, 408, 991
LweI GCATC 4 cut(s) 274, 453, 820, 991
MabI ACCWGGT 1 cut(s) 513
MaeI CTAG 3 cut(s) 660, 962, 1008
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 3 cut(s) 505, 627, 800
MalI GATC 2 cut(s) 42, 423
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 40, 421
MboII GAAGA 6 cut(s) 99, 269, 439, 606, 827, 840
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 39, 578
Mly113I GGCGCC 1 cut(s) 730
MmeI TCCRAC 3 cut(s) 120, 270, 678
MroI TCCGGA 1 cut(s) 590
MseI TTAA 2 cut(s) 426, 909
MslI CAYNNNNRTG 2 cut(s) 770, 987
MspA1I CMGCKG 1 cut(s) 807
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 5 cut(s) 46, 53, 346, 459, 591
MspR9I CCNGG 3 cut(s) 346, 460, 515
Mva1269I GAATGC 2 cut(s) 583, 956
MvaI CCWGG 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 358, 962
NarI GGCGCC 1 cut(s) 730
NciI CCSGG 2 cut(s) 346, 460
NdeII GATC 2 cut(s) 40, 421
NlaIV GGNNCC 1 cut(s) 731
NmuCI GTSAC 3 cut(s) 505, 627, 800
PaqCI CACCTGC 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 192, 279
PctI GAATGC 2 cut(s) 583, 956
PfeI GAWTC 4 cut(s) 374, 824, 898, 974
PflFI GACNNNGTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 9 cut(s) 76, 136, 190, 351, 385, 398, 763, 955, 1006
PluTI GGCGCC 1 cut(s) 733
PpuMI RGGWCCY 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 578
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 731
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 2 cut(s) 279, 488
RsaNI GTAC 2 cut(s) 278, 487
RseI CAYNNNNRTG 2 cut(s) 770, 987
SacI GAGCTC 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 2 cut(s) 426, 909
SatI GCNGC 9 cut(s) 75, 135, 189, 350, 384, 397, 762, 954, 1005
Sau3AI GATC 2 cut(s) 40, 421
Sau96I GGNCC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 346, 460, 515
SduI GDGCHC 2 cut(s) 39, 578
SexAI ACCWGGT 1 cut(s) 513
SfaNI GCATC 4 cut(s) 274, 453, 820, 991
SfoI GGCGCC 1 cut(s) 731
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 2 cut(s) 770, 987
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SspDI GGCGCC 1 cut(s) 729
SspMI CTAG 3 cut(s) 660, 962, 1008
SstI GAGCTC 1 cut(s) 578
StyD4I CCNGG 3 cut(s) 344, 458, 513
TaaI ACNGT 1 cut(s) 800
TaiI ACGT 1 cut(s) 270
TaqI TCGA 5 cut(s) 33, 195, 300, 450, 644
TatI WGTACW 2 cut(s) 277, 486
TauI GCSGC 6 cut(s) 77, 137, 191, 386, 764, 956
TfiI GAWTC 4 cut(s) 374, 824, 898, 974
Tru1I TTAA 2 cut(s) 426, 909
Tru9I TTAA 2 cut(s) 426, 909
TseFI GTSAC 3 cut(s) 505, 627, 800
TseI GCWGC 3 cut(s) 349, 396, 1004
Tsp45I GTSAC 3 cut(s) 505, 627, 800
TspDTI ATGAA 3 cut(s) 572, 576, 827
Tth111I GACNNNGTC 1 cut(s) 29
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 5 cut(s) 169, 401, 568, 640, 815
XbaI TCTAGA 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 3 cut(s) 660, 962, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.