Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

24560958 .. 24564373

Gene Structure 3416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGATGTCCAGTCCTGGACAGCTGCCTCGGCGGCGGAATCCCCTGCAACTCCCTCACGGAGCTCGTAGCCGAGAGCAGTTGCGGCAAGACCCAATTCTGCCTCCAACCCACTCTCTTCGCTCAGCTCCCTCCTTCCCACGGCGGCCTATCCGCCTCCTCTCTTTACCTCCACACAGAATTCCCTTTCCCCTTTCGCCGCCTCCACCACCTCTCCCACTCCTTCCGCTCCTCACACGCGAATCTTATCCTCGCCAACCCTTGTGAAGATGTATACGTTCAAGCTGTACATGATGCACACCACCTGCTCGACATAATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCCTGTGAGGCTAATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGCAACAACCCTTTGGATCTTAAGCGGAGGTCCTTCCTGTTCTTCGAGATTTCCGGGATGCTGAAGTTGTTGGCGAGAAAGTACAGCTTGGCGGTGGTGGTGACGAACCAGGTGGCTGATTTTATGGGGGAAATAGAGGGGATAAATGGGATGAGAGTTGGGTCAAATTGCGTGAATTCAAGGTTGTTCTTGTCTAGAAATGAGGAGATTGTTGGGAGAGAAAATGATTGGTTGGAGGATGATATGTTCAGGCAAACAAGAAGGCACCTTGATGTTGTTTTTGCTCCTCATTTGCTGCCATCGTCTTGTGAGTTTGTAATCACAAAGCAAGTGGTGTTTGGAGTTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

255

Amino Acids

28.6

Weight (kDa)

6.82

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	2 - 177	1.8e-23	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	678
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	239
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	179, 410, 589
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	288, 497
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	281, 594
AjnI	CCWGG	2 cut(s)	15, 522
AloI	GAACNNNNNNTCC	2 cut(s)	644, 676
AluBI	AGCT	5 cut(s)	24, 64, 127, 284, 501
AluI	AGCT	5 cut(s)	24, 64, 127, 284, 501
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	24, 358, 405, 709
ApoI	RAATTY	3 cut(s)	179, 410, 589
AspS9I	GGNCC	1 cut(s)	444
AsuC2I	CCSGG	2 cut(s)	355, 469
AsuHPI	GGTGA	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	11, 345, 417, 696
BccI	CCATC	1 cut(s)	721
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	17, 524
BcnI	CCSGG	2 cut(s)	355, 469
BfaI	CTAG	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	312
BglI	GCCNNNNNGGC	2 cut(s)	33, 367
BisI	GCNGC	9 cut(s)	25, 34, 85, 145, 199, 359, 393, 406, 710
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	9 cut(s)	26, 35, 86, 146, 200, 360, 394, 407, 711
Bme1390I	CCNGG	4 cut(s)	17, 355, 469, 524
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	1 cut(s)	680
BmrFI	CCNGG	4 cut(s)	17, 355, 469, 524
BmsI	GCATC	2 cut(s)	283, 462
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	355, 469
BsaJI	CCNNGG	2 cut(s)	28, 139
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	17, 524
BseDI	CCNNGG	2 cut(s)	28, 139
BseGI	GGATG	4 cut(s)	11, 477, 570, 658
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	4 cut(s)	148, 220, 632, 690
BseXI	GCAGC	4 cut(s)	11, 345, 417, 696
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	355, 468
BslI	CCNNNNNNNGG	1 cut(s)	140
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	430
Bsp1720I	GCTNAGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	680
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	678
BspTI	CTTAAG	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	28, 139
BssMI	GATC	1 cut(s)	430
BssNAI	GTATAC	1 cut(s)	274
Bst1107I	GTATAC	1 cut(s)	274
Bst2UI	CCWGG	2 cut(s)	17, 524
Bst6I	CTCTTC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	4 cut(s)	11, 477, 570, 658
BstFNI	CGCG	1 cut(s)	239
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 33, 84, 367, 414
BstNI	CCWGG	2 cut(s)	17, 524
BstSCI	CCNGG	4 cut(s)	15, 353, 467, 522
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	4 cut(s)	11, 345, 417, 696
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BstZ17I	GTATAC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	4 cut(s)	11, 477, 570, 658
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	444
CsiI	ACCWGGT	1 cut(s)	522
Csp6I	GTAC	2 cut(s)	287, 496
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	2 cut(s)	287, 496
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	51, 142
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRI	GAATTC	2 cut(s)	179, 589
EcoRII	CCWGG	2 cut(s)	15, 522
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	1 cut(s)	293
FaiI	YATR	5 cut(s)	274, 291, 314, 539, 659
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	9 cut(s)	25, 34, 85, 145, 199, 359, 393, 406, 710
FokI	GGATG	4 cut(s)	18, 484, 577, 665
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	9 cut(s)	25, 34, 85, 145, 199, 359, 393, 406, 710
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	9 cut(s)	25, 34, 85, 145, 199, 359, 393, 406, 710
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	355, 468
Hin1II	CATG	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HinfI	GANTC	3 cut(s)	39, 241, 383
HpaII	CCGG	2 cut(s)	355, 468
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	2 cut(s)	274, 760
Hpy188III	TCNNGA	2 cut(s)	460, 609
Hpy8I	GTNNAC	2 cut(s)	274, 760
HpyAV	CCTTC	4 cut(s)	144, 232, 457, 669
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	48, 296
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 33, 84, 367, 414
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	4 cut(s)	61, 132, 233, 703
Lsp1109I	GCAGC	4 cut(s)	11, 345, 417, 696
LweI	GCATC	2 cut(s)	283, 462
MabI	ACCWGGT	1 cut(s)	522
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	1 cut(s)	432
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	1 cut(s)	430
MboII	GAAGA	3 cut(s)	109, 278, 448
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	6 cut(s)	95, 179, 372, 410, 580, 589
MmeI	TCCRAC	2 cut(s)	130, 627
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	2 cut(s)	355, 468
MspR9I	CCNGG	4 cut(s)	17, 355, 469, 524
MvaI	CCWGG	2 cut(s)	17, 524
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	5 cut(s)	30, 33, 84, 367, 414
NciI	CCSGG	2 cut(s)	355, 469
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	680
NmeAIII	GCCGAG	2 cut(s)	9, 97
NmuCI	GTSAC	1 cut(s)	514
PaqCI	CACCTGC	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	39, 241, 383
PfoI	TCCNGGA	2 cut(s)	15, 467
PkrI	GCNGC	9 cut(s)	26, 35, 86, 146, 200, 360, 394, 407, 711
PpuMI	RGGWCCY	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	15, 522
PspGI	CCWGG	2 cut(s)	15, 522
PspN4I	GGNNCC	1 cut(s)	680
PspPI	GGNCC	1 cut(s)	444
PspPPI	RGGWCCY	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	2 cut(s)	288, 497
RsaNI	GTAC	2 cut(s)	287, 496
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	9 cut(s)	25, 34, 85, 145, 199, 359, 393, 406, 710
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	1 cut(s)	444
ScrFI	CCNGG	4 cut(s)	17, 355, 469, 524
SduI	GDGCHC	1 cut(s)	66
SexAI	ACCWGGT	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	283, 462
SinI	GGWCC	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	6 cut(s)	95, 179, 372, 410, 580, 589
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	4 cut(s)	15, 353, 467, 522
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	309, 459
TasI	AATT	6 cut(s)	95, 179, 372, 410, 580, 589
TatI	WGTACW	2 cut(s)	286, 495
TauI	GCSGC	5 cut(s)	36, 87, 147, 201, 395
TfiI	GAWTC	3 cut(s)	39, 241, 383
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	4 cut(s)	24, 358, 405, 709
Tsp45I	GTSAC	1 cut(s)	514
TspGWI	ACGGA	1 cut(s)	74
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	3 cut(s)	179, 410, 589
XbaI	TCTAGA	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.