Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Forward (+)

26647211 .. 26648988

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1172600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACCCCAGAAAATCTCCTAACCCGTCCTCTCATCGCCGATAAATTAACGCTGGGTTGCCCACTCCTCGACCGCTGCCTCGGCGGCGGGGTCCCCTGCTGTTCAATAACGGAGCTCGTCGCCGAGAGCAGTTGCGGCAAGACTCAATTTTGCCTCCAACTCGCCCTCTCCGCTCAGCTCCCGCCATCCCACGGCGGCCTCTCCGCCTCCTCGCTTTACCTACACACCGAATTCCCTTTCCCGTTTCGCCGCCTCCACCAACTCTCCCAAGCATTTCAATCCTCACACGCTAACCTCGTAGCCATTAACCCCTGTGAAGATGTGTATGTTCATGCTGTGCACGACGCACATCAGATGCTTGATATAATGCCCAAGATAGAGTCTTTTATTGAGAGCGAGAAAACCCGGTTGCCTGTCAGGCTAATTGTGATTGATTCCATCGCGGCGCTGTTCCGGACTGAATTTAACAACACCCCTTTGGATCTTAAGCGGAGGTCGTCGCTGTTTTTCAAGATTGCCGGGAAGTTAAAGTCGTTGGCCAACAGGTTCCGATTAGCGGTGGTGGTGACGAACCAGGTGGTTGATTTTATGGGGGCAAGTGATGGGGTGAATGGGGTCAAAGTGGGCAACTTTGGCTCATTGGACTCGTCGGGAAGACGGGTTTGCCCTGCTCTGGGACTCGCTTGGGCGAATTGCGTGAATTCAAGGTTGTTCTTGTCGAGAAATGAGGTGGTTGTTGGCGAAGGGAATAGCAATGAGCTGGAGGATGGTTTTTGTAGGCAAACAAAGAGGCGACTTGATATTCTTTTTGCGCCTCATTTGCCCCAAGCATCGTGTGAATTTGTCATCACACGACAAGGAGTGTTTGGAGTTGAGTCAGTTGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

297

Amino Acids

32.38

Weight (kDa)

8.02

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	15 - 199	6.6e-30	Rad51
AAA_25	PF13481	35 - 157	3.9e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	1 cut(s)	443
AccIII	TCCGGA	1 cut(s)	453
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	4 cut(s)	230, 461, 700, 839
AfiI	CCNNNNNNNGG	4 cut(s)	191, 556, 673, 674
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	105, 278, 511, 705
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	3 cut(s)	115, 178, 760
AluI	AGCT	3 cut(s)	115, 178, 760
Alw21I	GWGCWC	2 cut(s)	117, 342
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	489
Aor13HI	TCCGGA	1 cut(s)	453
AoxI	GGCC	2 cut(s)	196, 537
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	4 cut(s)	230, 461, 700, 839
AspLEI	GCGC	2 cut(s)	448, 814
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	2 cut(s)	406, 520
AsuHPI	GGTGA	2 cut(s)	577, 619
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	2 cut(s)	117, 342
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	4 cut(s)	193, 446, 596, 761
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	2 cut(s)	406, 520
BfoI	RGCGCY	1 cut(s)	449
BfrI	CTTAAG	1 cut(s)	485
BglI	GCCNNNNNGGC	2 cut(s)	84, 418
BisI	GCNGC	6 cut(s)	76, 85, 136, 196, 250, 444
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	6 cut(s)	77, 86, 137, 197, 251, 445
Bme1390I	CCNGG	3 cut(s)	406, 520, 575
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	3 cut(s)	92, 93, 548
BmrFI	CCNGG	3 cut(s)	406, 520, 575
BmsI	GCATC	2 cut(s)	345, 839
BpiI	GAAGAC	1 cut(s)	661
BpmI	CTGGAG	1 cut(s)	782
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	406, 520
BsaJI	CCNNGG	2 cut(s)	79, 190
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 556, 673, 674
Bse3DI	GCAATG	1 cut(s)	760
BseAI	TCCGGA	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	79, 190
BseGI	GGATG	2 cut(s)	185, 772
BseLI	CCNNNNNNNGG	4 cut(s)	191, 556, 673, 674
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	56, 199
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	198, 539
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	2 cut(s)	117, 342
BsiSI	CCGG	3 cut(s)	406, 454, 519
BslFI	GGGAC	2 cut(s)	77, 690
BslI	CCNNNNNNNGG	4 cut(s)	191, 556, 673, 674
BsmFI	GGGAC	2 cut(s)	77, 690
BsnI	GGCC	2 cut(s)	198, 539
Bsp1286I	GDGCHC	2 cut(s)	117, 342
Bsp13I	TCCGGA	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	481
Bsp1720I	GCTNAGC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	198, 539
BspCNI	CTCAG	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	3 cut(s)	92, 93, 548
BspPI	GGATC	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	760
BssECI	CCNNGG	2 cut(s)	79, 190
BssMI	GATC	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	575
BstAFI	CTTAAG	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	185, 772
BstFNI	CGCG	1 cut(s)	443
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 814
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 84, 135, 170, 418, 633, 820
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	3 cut(s)	404, 518, 573
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	661
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	198, 539
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	2 cut(s)	19, 424
BtsCI	GGATG	2 cut(s)	185, 772
CfoI	GCGC	2 cut(s)	448, 814
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	353
CsiI	ACCWGGT	1 cut(s)	573
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	8 cut(s)	115, 178, 198, 302, 421, 539, 636, 760
CviKI_1	RGCY	8 cut(s)	115, 178, 198, 302, 421, 539, 636, 760
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	537
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRI	GAATTC	2 cut(s)	230, 700
EcoRII	CCWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	1 cut(s)	335
FaiI	YATR	6 cut(s)	327, 333, 365, 590, 887, 889
FaqI	GGGAC	2 cut(s)	77, 690
FatI	CATG	1 cut(s)	331
FauI	CCCGC	2 cut(s)	80, 189
Fnu4HI	GCNGC	6 cut(s)	76, 85, 136, 196, 250, 444
FokI	GGATG	2 cut(s)	172, 779
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	76, 85, 136, 196, 250, 444
GlaI	GCGC	2 cut(s)	447, 813
GluI	GCNGC	6 cut(s)	76, 85, 136, 196, 250, 444
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	782
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	198, 539
HapII	CCGG	3 cut(s)	406, 454, 519
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	448, 814
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	2 cut(s)	446, 812
HinP1I	GCGC	2 cut(s)	446, 812
HinfI	GANTC	6 cut(s)	142, 380, 434, 644, 678, 875
HpaII	CCGG	3 cut(s)	406, 454, 519
HphI	GGTGA	2 cut(s)	577, 619
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	354, 551
Hpy188III	TCNNGA	4 cut(s)	454, 511, 651, 720
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	4 cut(s)	122, 347, 502, 652
HpyAV	CCTTC	1 cut(s)	737
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 84, 135, 170, 418, 633, 820
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	2 cut(s)	446, 812
KflI	GGGWCCC	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	453
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	112, 183
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	345, 839
MabI	ACCWGGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	1 cut(s)	483
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	1 cut(s)	481
MboII	GAAGA	2 cut(s)	329, 666
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	2 cut(s)	117, 342
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	8 cut(s)	44, 146, 230, 423, 461, 691, 700, 839
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	5 cut(s)	136, 389, 638, 672, 884
MmeI	TCCRAC	1 cut(s)	181
Mox20I	TGGCCA	1 cut(s)	539
MroI	TCCGGA	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	5 cut(s)	47, 306, 465, 486, 527
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	3 cut(s)	406, 454, 519
MspR9I	CCNGG	3 cut(s)	406, 520, 575
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	7 cut(s)	81, 84, 135, 170, 418, 633, 820
NciI	CCSGG	2 cut(s)	406, 520
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	3 cut(s)	92, 93, 548
NmeAIII	GCCGAG	2 cut(s)	60, 148
NmuCI	GTSAC	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	77, 86, 137, 197, 251, 445
PleI	GAGTC	5 cut(s)	136, 388, 638, 672, 883
PpsI	GAGTC	5 cut(s)	136, 388, 638, 672, 883
PpuMI	RGGWCCY	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	92, 93, 548
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	47, 306, 465, 486, 527
SatI	GCNGC	6 cut(s)	76, 85, 136, 196, 250, 444
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	5 cut(s)	136, 389, 638, 672, 884
ScrFI	CCNGG	3 cut(s)	406, 520, 575
SduI	GDGCHC	2 cut(s)	117, 342
SexAI	ACCWGGT	1 cut(s)	573
SfaNI	GCATC	2 cut(s)	345, 839
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	8 cut(s)	44, 146, 230, 423, 461, 691, 700, 839
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	404, 518, 573
TaqI	TCGA	2 cut(s)	69, 719
TasI	AATT	8 cut(s)	44, 146, 230, 423, 461, 691, 700, 839
TauI	GCSGC	5 cut(s)	87, 138, 198, 252, 446
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	5 cut(s)	47, 306, 465, 486, 527
Tru9I	TTAA	5 cut(s)	47, 306, 465, 486, 527
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	4 cut(s)	230, 461, 700, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.