Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Forward (+)

46118588 .. 46124290

Gene Structure 5703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAACCCCTCAAACCTCCTCCCCACCCACAATCTAACTTTGGGCTGTCCATTCCTAGACTGCTGCCTTGGCGGCGGAATCCCCTGCAACTCCCTCACCGGCCGCTGTGCCTCCTCTCTTTACCTCTACACAGAATTCCCTTTCCCCTTTCGCCGCCTCCACCACCTCTCCCACTCCTTCCACTCCTCACAAGCTAATCTTATCCTCGCCAACCCTTGTGAAGATGTATACGTTCAAGCTGTACATGATGCACACCACCTGCTCAACATAATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCAGCTGCCTGTGAGGCTGATTGTGATTGATTCCATTGCCGCACTATTTCGCAGTGAATTTGGGAACAACCCTTTAGATCTTAAGCTGAGGTCCTTCCTGTTCTTCGAGATTTCAGGGCTGTTGAAGTTGTTGGCGAGAAAGTACAGCGTGGTGGTGGTGGTGACGAACCAGGTGGTTGATTTTATGGGGGAAGTAGAGGGGATAAATGGGATGAGAGTTTGGAATTTGAGCTCCTTGCATTCCTCCGGAAGACAGATTGTTGGGAGAGAAAATGATGGGTTGGAGGATGATCTATGCAGGCAAACAAGAAGGCGACTTGATGTTGCTTTCGCTCCTCATTTGCCGCCATCGTTGTGTGAGTTTGTAATCACAAAGCAAGGGGTGTTTGGAGTTGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

237

Amino Acids

26.42

Weight (kDa)

7.63

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	32 - 231	4.1e-11	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	554
AciI	CCGC	6 cut(s)	72, 75, 103, 154, 348, 653
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	134, 365, 532
AfaI	GTAC	2 cut(s)	243, 452
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	236, 433
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	5 cut(s)	194, 239, 313, 394, 540
AluI	AGCT	5 cut(s)	194, 239, 313, 394, 540
Alw21I	GWGCWC	1 cut(s)	542
Aor13HI	TCCGGA	1 cut(s)	554
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	63, 313
ApoI	RAATTY	3 cut(s)	134, 365, 532
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	2 cut(s)	88, 481
AvaII	GGWCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	542
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	50, 300
BccI	CCATC	2 cut(s)	578, 664
BciT130I	CCWGG	1 cut(s)	479
BfaI	CTAG	1 cut(s)	56
BfrI	CTTAAG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	267
BglI	GCCNNNNNGGC	2 cut(s)	72, 322
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	7 cut(s)	64, 73, 103, 154, 314, 348, 653
BlsI	GCNGC	7 cut(s)	65, 74, 104, 155, 315, 349, 654
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	565
Bpu10I	CCTNAGC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse118I	RCCGGY	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	525, 601
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	4 cut(s)	8, 103, 175, 633
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	50, 300
BseYI	CCCAGC	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	99, 555
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp13I	TCCGGA	1 cut(s)	554
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	385, 598
BspACI	CCGC	6 cut(s)	72, 75, 103, 154, 348, 653
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	554
BspMI	ACCTGC	1 cut(s)	267
BspTI	CTTAAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	385, 598
BssNAI	GTATAC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	67
Bst1107I	GTATAC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	298, 608
BstDEI	CTNAG	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	525, 601
BstKTI	GATC	2 cut(s)	388, 601
BstMBI	GATC	2 cut(s)	385, 598
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 72, 322
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	50, 300
BstV2I	GAAGAC	1 cut(s)	565
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BstZ17I	GTATAC	1 cut(s)	229
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	525, 601
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	298, 608
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	399
CsiI	ACCWGGT	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	242, 451
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	9 cut(s)	45, 102, 194, 239, 313, 325, 394, 427, 540
CviKI_1	RGCY	9 cut(s)	45, 102, 194, 239, 313, 325, 394, 427, 540
CviQI	GTAC	2 cut(s)	242, 451
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	2 cut(s)	387, 600
DpnII	GATC	2 cut(s)	385, 598
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	540
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	399
Eco52I	CGGCCG	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	540
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	248
FaiI	YATR	5 cut(s)	229, 246, 269, 494, 604
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	7 cut(s)	64, 73, 103, 154, 314, 348, 653
FokI	GGATG	2 cut(s)	532, 608
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	7 cut(s)	64, 73, 103, 154, 314, 348, 653
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	7 cut(s)	64, 73, 103, 154, 314, 348, 653
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	99, 555
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	2 cut(s)	78, 338
HpaII	CCGG	2 cut(s)	99, 555
HphI	GGTGA	2 cut(s)	88, 481
Hpy166II	GTNNAC	2 cut(s)	229, 703
Hpy188III	TCNNGA	2 cut(s)	415, 555
Hpy8I	GTNNAC	2 cut(s)	229, 703
HpyAV	CCTTC	3 cut(s)	187, 412, 612
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	87, 251, 547, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 72, 322
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	385, 598
LmnI	GCTCC	2 cut(s)	545, 646
Lsp1109I	GCAGC	2 cut(s)	50, 300
LweI	GCATC	1 cut(s)	238
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	2 cut(s)	387, 600
MboI	GATC	2 cut(s)	385, 598
MboII	GAAGA	3 cut(s)	233, 403, 570
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	3 cut(s)	134, 365, 532
MmeI	TCCRAC	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	554
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	661
MspA1I	CMGCKG	2 cut(s)	105, 313
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	2 cut(s)	99, 555
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	69, 72, 322
NdeII	GATC	2 cut(s)	385, 598
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	78, 338
PkrI	GCNGC	7 cut(s)	65, 74, 104, 155, 315, 349, 654
PpuMI	RGGWCCY	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	399
PspPPI	RGGWCCY	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	243, 452
RsaNI	GTAC	2 cut(s)	242, 451
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	7 cut(s)	64, 73, 103, 154, 314, 348, 653
Sau3AI	GATC	2 cut(s)	385, 598
Sau96I	GGNCC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	542
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	134, 365, 532
SsiI	CCGC	6 cut(s)	72, 75, 103, 154, 348, 653
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	67
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	134, 365, 532
TatI	WGTACW	2 cut(s)	241, 450
TauI	GCSGC	5 cut(s)	75, 105, 156, 350, 655
TfiI	GAWTC	2 cut(s)	78, 338
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	63, 313
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	3 cut(s)	134, 365, 532
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.