Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

66405359 .. 66410443

Gene Structure 5085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG409500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAACCCCTCAAACCTCCTCCCCAGCCAGAATCTAACGATGGGCTGTCCAGTCCTGGACCGCTGCCTCGGCGTCGGAATCCCCTGCAACTCCCTCACGGAGCTCGTGACCGAGAGCAGTTGCGGCAAGACCCAATTCTGCCTCCAACTCACTCTCTTCTCTCAGCTCCCTCCTTCCCACGGCAGCCTCTCCGCCTCCTCTCTTTACCTCCACACAGAATTCCCTTTCCCCTTTCGCCGCCTCCGCCACCTCTCCCACTCCTTCCGCTCCTCACACGCGAATCTTATCCTCTCCAACCCCTATGAAGATGTGTACGTTCAAGCTGTACACGATGCACACCACCTGCTCGACATAATGCCCAAGATAGAGTGCTTTGTTGCGAGTAGGAAAACCCGGCTGCCTGTGAGGCTAATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGCAACAACCCTTTGGATCTTAAGTGGAGGTCCTTCCTGTTCTTCGAGATTTCCGGGATGCTGAAGTTGTTGGCGAGAAAGTACAGCTTGGTGGTGGTGGTGACGAACCAGGTGGTTGATTTTATGGGGGAAGTAGAGGGGATAAGGGGGATGAGAGTTCGGAATTTGAGCTCCTTGCATTCATCCGGAAGACGGTTTTGTGGTGTTTGGGTTGCTGGCAAGGAACTGGAACTAGCACAGCTTGAATCAGAGCATCAACATGTGTTGATGGTGCTGCTAGTCAAGGGATTGAGCTGGAATGAATGGACAGGGCGGGAAGAGAACATGAAGGCTCGGACTGTGACACTGCAACTCCCAGCGGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

273

Amino Acids

30.8

Weight (kDa)

8.49

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	11 - 191	3e-22	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	267
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	638
AciI	CCGC	9 cut(s)	61, 123, 192, 238, 244, 265, 432, 766, 812
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	3 cut(s)	218, 449, 616
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	314, 327, 536
AfiI	CCNNNNNNNGG	2 cut(s)	179, 645
AflII	CTTAAG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	2 cut(s)	320, 698
AjnI	CCWGG	2 cut(s)	54, 561
AluBI	AGCT	7 cut(s)	103, 166, 323, 540, 624, 694, 747
AluI	AGCT	7 cut(s)	103, 166, 323, 540, 624, 694, 747
Alw21I	GWGCWC	2 cut(s)	105, 626
AlwI	GGATC	1 cut(s)	477
Aor13HI	TCCGGA	1 cut(s)	638
ApeKI	GCWGC	5 cut(s)	63, 183, 397, 444, 727
ApoI	RAATTY	3 cut(s)	218, 449, 616
AspS9I	GGNCC	2 cut(s)	58, 483
AsuC2I	CCSGG	2 cut(s)	394, 508
AsuHPI	GGTGA	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	58, 483
BanII	GRGCYC	2 cut(s)	105, 626
BauI	CACGAG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	649
Bbv12I	GWGCWC	2 cut(s)	105, 626
BbvI	GCAGC	5 cut(s)	50, 195, 384, 456, 714
BccI	CCATC	2 cut(s)	34, 715
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	56, 563
BcnI	CCSGG	2 cut(s)	394, 508
BfaI	CTAG	2 cut(s)	686, 731
BfrI	CTTAAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	406
BisI	GCNGC	8 cut(s)	64, 124, 184, 238, 398, 432, 445, 728
BlsI	GCNGC	8 cut(s)	65, 125, 185, 239, 399, 433, 446, 729
Bme1390I	CCNGG	4 cut(s)	56, 394, 508, 563
Bme18I	GGWCC	2 cut(s)	58, 483
BmgT120I	GGNCC	2 cut(s)	58, 483
BmrFI	CCNGG	4 cut(s)	56, 394, 508, 563
BmsI	GCATC	3 cut(s)	322, 501, 715
BpiI	GAAGAC	1 cut(s)	649
BpuMI	CCSGG	2 cut(s)	394, 508
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	67, 178
BsaWI	WCCGGW	1 cut(s)	638
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 645
Bse1I	ACTGG	2 cut(s)	50, 684
Bse3DI	GCAATG	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	56, 563
BseDI	CCNNGG	2 cut(s)	67, 178
BseGI	GGATG	3 cut(s)	516, 609, 635
BseLI	CCNNNNNNNGG	2 cut(s)	179, 645
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	50, 684
BseRI	GAGGAG	3 cut(s)	8, 187, 259
BseXI	GCAGC	5 cut(s)	50, 195, 384, 456, 714
BseYI	CCCAGC	2 cut(s)	23, 808
Bsh1236I	CGCG	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	105, 626
BsiSI	CCGG	3 cut(s)	394, 507, 639
BslI	CCNNNNNNNGG	2 cut(s)	179, 645
BsmI	GAATGC	1 cut(s)	631
Bsp1286I	GDGCHC	2 cut(s)	105, 626
Bsp13I	TCCGGA	1 cut(s)	638
Bsp1407I	TGTACA	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	9 cut(s)	61, 123, 192, 238, 244, 265, 432, 766, 812
BspCNI	CTCAG	1 cut(s)	175
BspEI	TCCGGA	1 cut(s)	638
BspFNI	CGCG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	477
BspTI	CTTAAG	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	426
BsrGI	TGTACA	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	50, 684
BssECI	CCNNGG	2 cut(s)	67, 178
BssMI	GATC	1 cut(s)	469
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	56, 563
Bst4CI	ACNGT	2 cut(s)	648, 793
Bst6I	CTCTTC	2 cut(s)	161, 765
BstACI	GRCGYC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	3 cut(s)	516, 609, 635
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 123, 243, 406, 453
BstNI	CCWGG	2 cut(s)	56, 563
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	4 cut(s)	54, 392, 506, 561
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	5 cut(s)	50, 195, 384, 456, 714
BstV2I	GAAGAC	1 cut(s)	649
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	516, 609, 635
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	58, 483
CseI	GACGC	1 cut(s)	61
CsiI	ACCWGGT	1 cut(s)	561
Csp6I	GTAC	3 cut(s)	313, 326, 535
CviAII	CATG	2 cut(s)	713, 778
CviQI	GTAC	3 cut(s)	313, 326, 535
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	161, 765
EarI	CTCTTC	2 cut(s)	161, 765
EciI	GGCGGA	2 cut(s)	181, 233
Ecl136II	GAGCTC	2 cut(s)	103, 624
Eco24I	GRGCYC	2 cut(s)	105, 626
Eco47I	GGWCC	2 cut(s)	58, 483
Eco53kI	GAGCTC	2 cut(s)	103, 624
Eco57I	CTGAAG	1 cut(s)	536
EcoICRI	GAGCTC	2 cut(s)	103, 624
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	54, 561
EcoT38I	GRGCYC	2 cut(s)	105, 626
FaeI	CATG	2 cut(s)	716, 781
FaiI	YATR	5 cut(s)	303, 353, 578, 714, 779
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	2 cut(s)	712, 777
FauI	CCCGC	1 cut(s)	759
Fnu4HI	GCNGC	8 cut(s)	64, 124, 184, 238, 398, 432, 445, 728
FokI	GGATG	3 cut(s)	523, 616, 622
FriOI	GRGCYC	2 cut(s)	105, 626
Fsp4HI	GCNGC	8 cut(s)	64, 124, 184, 238, 398, 432, 445, 728
FspBI	CTAG	2 cut(s)	686, 731
GluI	GCNGC	8 cut(s)	64, 124, 184, 238, 398, 432, 445, 728
GsaI	CCCAGC	2 cut(s)	27, 812
HapII	CCGG	3 cut(s)	394, 507, 639
HgaI	GACGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	716, 781
HinfI	GANTC	5 cut(s)	31, 78, 280, 422, 698
HpaII	CCGG	3 cut(s)	394, 507, 639
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	313, 328
Hpy188I	TCNGA	4 cut(s)	77, 615, 703, 789
Hpy188III	TCNNGA	3 cut(s)	106, 499, 639
Hpy8I	GTNNAC	2 cut(s)	313, 328
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	4 cut(s)	183, 271, 496, 775
HpyCH4III	ACNGT	2 cut(s)	648, 793
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	87, 335, 631, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 123, 243, 406, 453
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	716, 781
Kpn2I	TCCGGA	1 cut(s)	638
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	4 cut(s)	100, 171, 272, 629
Lsp1109I	GCAGC	5 cut(s)	50, 195, 384, 456, 714
LweI	GCATC	3 cut(s)	322, 501, 715
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	2 cut(s)	686, 731
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	106, 553, 793
MalI	GATC	1 cut(s)	471
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	1 cut(s)	469
MboII	GAAGA	5 cut(s)	148, 317, 487, 654, 782
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	2 cut(s)	105, 626
MluCI	AATT	5 cut(s)	134, 218, 411, 449, 616
MmeI	TCCRAC	3 cut(s)	55, 169, 318
MroI	TCCGGA	1 cut(s)	638
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	2 cut(s)	63, 812
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	3 cut(s)	394, 507, 639
MspR9I	CCNGG	4 cut(s)	56, 394, 508, 563
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	2 cut(s)	56, 563
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	5 cut(s)	69, 123, 243, 406, 453
NciI	CCSGG	2 cut(s)	394, 508
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	2 cut(s)	716, 781
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	3 cut(s)	106, 553, 793
NspI	RCATGY	1 cut(s)	716
PaqCI	CACCTGC	1 cut(s)	351
PciI	ACATGT	1 cut(s)	712
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	5 cut(s)	31, 78, 280, 422, 698
PfoI	TCCNGGA	2 cut(s)	54, 506
PkrI	GCNGC	8 cut(s)	65, 125, 185, 239, 399, 433, 446, 729
PpuMI	RGGWCCY	1 cut(s)	483
PscI	ACATGT	1 cut(s)	712
Psp124BI	GAGCTC	2 cut(s)	105, 626
Psp5II	RGGWCCY	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	54, 561
PspFI	CCCAGC	2 cut(s)	23, 808
PspGI	CCWGG	2 cut(s)	54, 561
PspPI	GGNCC	2 cut(s)	58, 483
PspPPI	RGGWCCY	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	3 cut(s)	314, 327, 536
RsaNI	GTAC	3 cut(s)	313, 326, 535
RseI	CAYNNNNRTG	1 cut(s)	711
SacI	GAGCTC	2 cut(s)	105, 626
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	8 cut(s)	64, 124, 184, 238, 398, 432, 445, 728
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	2 cut(s)	58, 483
ScrFI	CCNGG	4 cut(s)	56, 394, 508, 563
SduI	GDGCHC	2 cut(s)	105, 626
SexAI	ACCWGGT	1 cut(s)	561
SfaNI	GCATC	3 cut(s)	322, 501, 715
SinI	GGWCC	2 cut(s)	58, 483
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	5 cut(s)	134, 218, 411, 449, 616
SsiI	CCGC	9 cut(s)	61, 123, 192, 238, 244, 265, 432, 766, 812
SspMI	CTAG	2 cut(s)	686, 731
SstI	GAGCTC	2 cut(s)	105, 626
StyD4I	CCNGG	4 cut(s)	54, 392, 506, 561
TaaI	ACNGT	2 cut(s)	648, 793
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	348, 498
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	5 cut(s)	134, 218, 411, 449, 616
TatI	WGTACW	2 cut(s)	325, 534
TauI	GCSGC	3 cut(s)	126, 240, 434
TfiI	GAWTC	5 cut(s)	31, 78, 280, 422, 698
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	3 cut(s)	106, 553, 793
TseI	GCWGC	5 cut(s)	63, 183, 397, 444, 727
Tsp45I	GTSAC	3 cut(s)	106, 553, 793
TspDTI	ATGAA	5 cut(s)	17, 318, 624, 768, 794
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	804
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	58, 483
XapI	RAATTY	3 cut(s)	218, 449, 616
XceI	RCATGY	1 cut(s)	716
XspI	CTAG	2 cut(s)	686, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.