Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Forward (+)

4372354 .. 4374064

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACACCCCAAAACCTCATGCTCCTTCCTCTTTCAACCCCTAAATTATCCATTGGATGCCCAATACTAGATCACTGCTTGGGGGGTGGGATACCCTGCAAGTCCATAACAGAATTAGTAGGGGAGAGTGGTTCTGGGAAGACGCAGCTTTGTCTCCAACTTACGGTACGAGCTCAGCTCCCACCCTCACATGGCGGACTAGGGGGCTCCTCCGTCTACATATTCACAGAATTCAGCTTCCCATTTCGTCGATTGCAACAACTAGGCAACCTTTATCATGCATCATACCCCAACTTAATAAGGTTGGAGCCATTGGAAGACATATATGTTCATGGTGTTCATGATGCTCAAGAACTCATCCATGTCCTTGGAGACATAGAAGCATTTATTGCCATTGATCACACCCGCCTACCTGTGAAACTCATTGTCATTGATTCCATTGCTGCATTGTTCCGATCACAGTATCAGACAACACCGGCAGATTTGAAACGGCGGTCTGAAATGTTCTTCAACATATCTGGGACATTGAAGGGTTTAGCAAATAAGTTTGGGTTGGCGTTGGTTGTCACCAACCAAGTGGTGGATTTTATTGGGCCACATGATGGAGTGAATGGGGTGAGGTTGGGAAACTTGGAGTCCCTGGACACATCAGGCAGACGGGAGTATCCCACATTCCGTGAGGTTGTACCGGGTAGATGCTATCCGAATAAGCATCCATCCAGGTTTTCCGAGTGTAATACCGAGAAGCCTTTGCGTATACACTTACTTTCAAGAAGCGGCAAACTGCAACTACATGCTTACAAGGTAGCTGCTCAAGCTGAAACTTTCTACAACTACAACTGTTGTTCGTCAAATCTACGAGGCCGTCCATATCACCGTCCAAAACATTATACTGTGCATTATTTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

304

Amino Acids

33.81

Weight (kDa)

8.97

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	580, 602
AccI	GTMKAC	2 cut(s)	216, 757
AciI	CCGC	4 cut(s)	195, 406, 493, 777
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	2 cut(s)	168, 687
AfiI	CCNNNNNNNGG	4 cut(s)	163, 191, 580, 602
AgsI	TTSAA	5 cut(s)	36, 487, 511, 529, 771
AjnI	CCWGG	2 cut(s)	639, 719
AluBI	AGCT	6 cut(s)	148, 173, 178, 237, 809, 818
AluI	AGCT	6 cut(s)	148, 173, 178, 237, 809, 818
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	158, 366
AoxI	GGCC	2 cut(s)	593, 862
ApeKI	GCWGC	3 cut(s)	145, 443, 809
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	593
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	3 cut(s)	559, 628, 866
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BanII	GRGCYC	2 cut(s)	175, 209
BbsI	GAAGAC	2 cut(s)	146, 324
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	3 cut(s)	157, 430, 796
BccI	CCATC	2 cut(s)	596, 724
BceAI	ACGGC	2 cut(s)	506, 849
BciT130I	CCWGG	2 cut(s)	641, 721
BciVI	GTATCC	2 cut(s)	84, 675
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	158, 366
BfaI	CTAG	3 cut(s)	68, 200, 263
BfuI	GTATCC	2 cut(s)	84, 675
BisI	GCNGC	4 cut(s)	146, 444, 778, 810
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	4 cut(s)	147, 445, 779, 811
Bme1390I	CCNGG	3 cut(s)	641, 690, 721
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	208, 309
BmrFI	CCNGG	3 cut(s)	641, 690, 721
BmsI	GCATC	5 cut(s)	47, 290, 334, 686, 721
BpiI	GAAGAC	2 cut(s)	146, 324
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	333, 798
BpuMI	CCSGG	1 cut(s)	690
BsaJI	CCNNGG	2 cut(s)	367, 639
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 191, 580, 602
Bse118I	RCCGGY	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	641, 721
BseDI	CCNNGG	2 cut(s)	367, 639
BseGI	GGATG	4 cut(s)	62, 357, 712, 716
BseLI	CCNNNNNNNGG	4 cut(s)	163, 191, 580, 602
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	3 cut(s)	157, 430, 796
BshFI	GGCC	2 cut(s)	595, 864
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	476, 689
BslFI	GGGAC	2 cut(s)	535, 622
BslI	CCNNNNNNNGG	4 cut(s)	163, 191, 580, 602
BsmAI	GTCTC	2 cut(s)	158, 366
BsmFI	GGGAC	2 cut(s)	535, 622
BsnI	GGCC	2 cut(s)	595, 864
Bsp1286I	GDGCHC	2 cut(s)	175, 209
Bsp143I	GATC	3 cut(s)	70, 397, 455
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	4 cut(s)	195, 406, 493, 777
BspANI	GGCC	2 cut(s)	595, 864
BspCNI	CTCAG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	208, 309
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	367, 639
BssMI	GATC	3 cut(s)	70, 397, 455
BssNAI	GTATAC	1 cut(s)	758
BssT1I	CCWWGG	1 cut(s)	367
Bst1107I	GTATAC	1 cut(s)	758
Bst2UI	CCWGG	2 cut(s)	641, 721
Bst4CI	ACNGT	5 cut(s)	166, 462, 842, 878, 895
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	62, 357, 712, 716
BstKTI	GATC	3 cut(s)	73, 400, 458
BstMAI	GTCTC	2 cut(s)	158, 366
BstMBI	GATC	3 cut(s)	70, 397, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 815
BstNI	CCWGG	2 cut(s)	641, 721
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	3 cut(s)	639, 688, 719
BstV1I	GCAGC	3 cut(s)	157, 430, 796
BstV2I	GAAGAC	2 cut(s)	146, 324
BstXI	CCANNNNNNTGG	2 cut(s)	368, 577
BstZ17I	GTATAC	1 cut(s)	758
BsuI	GTATCC	2 cut(s)	84, 675
BsuRI	GGCC	2 cut(s)	595, 864
BtsCI	GGATG	4 cut(s)	62, 357, 712, 716
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
CciI	TCATGA	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	593
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	167, 686
CviAII	CATG	8 cut(s)	19, 191, 278, 332, 341, 362, 599, 794
CviQI	GTAC	2 cut(s)	167, 686
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	72, 399, 457
DpnII	GATC	3 cut(s)	70, 397, 455
EciI	GGCGGA	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	2 cut(s)	175, 209
Eco53kI	GAGCTC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	639, 719
EcoT14I	CCWWGG	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	2 cut(s)	175, 209
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	8 cut(s)	22, 194, 281, 335, 344, 365, 602, 797
FaqI	GGGAC	2 cut(s)	535, 622
FatI	CATG	8 cut(s)	18, 190, 277, 331, 340, 361, 598, 793
FauI	CCCGC	1 cut(s)	413
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	2 cut(s)	216, 757
Fnu4HI	GCNGC	4 cut(s)	146, 444, 778, 810
FokI	GGATG	4 cut(s)	69, 344, 699, 703
FriOI	GRGCYC	2 cut(s)	175, 209
Fsp4HI	GCNGC	4 cut(s)	146, 444, 778, 810
FspBI	CTAG	3 cut(s)	68, 200, 263
GluI	GCNGC	4 cut(s)	146, 444, 778, 810
HaeIII	GGCC	2 cut(s)	595, 864
HapII	CCGG	2 cut(s)	476, 689
HgaI	GACGC	1 cut(s)	151
Hin1II	CATG	8 cut(s)	22, 194, 281, 335, 344, 365, 602, 797
HinfI	GANTC	2 cut(s)	434, 635
HpaII	CCGG	2 cut(s)	476, 689
HphI	GGTGA	3 cut(s)	559, 628, 866
Hpy166II	GTNNAC	2 cut(s)	217, 758
Hpy188I	TCNGA	5 cut(s)	455, 468, 499, 705, 730
Hpy188III	TCNNGA	3 cut(s)	341, 350, 771
Hpy8I	GTNNAC	2 cut(s)	217, 758
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	35, 523
HpyCH4III	ACNGT	5 cut(s)	166, 462, 842, 878, 895
HpyCH4V	TGCA	6 cut(s)	99, 256, 281, 446, 787, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 815
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	8 cut(s)	22, 194, 281, 335, 344, 365, 602, 797
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	70, 397, 455
LmnI	GCTCC	4 cut(s)	27, 183, 212, 307
Lsp1109I	GCAGC	3 cut(s)	157, 430, 796
LweI	GCATC	5 cut(s)	47, 290, 334, 686, 721
MaeI	CTAG	3 cut(s)	68, 200, 263
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	3 cut(s)	72, 399, 457
MboI	GATC	3 cut(s)	70, 397, 455
MboII	GAAGA	3 cut(s)	151, 329, 499
MhlI	GDGCHC	2 cut(s)	175, 209
MluCI	AATT	3 cut(s)	44, 113, 230
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	181, 285
MnlI	CCTC	7 cut(s)	26, 39, 196, 220, 612, 673, 854
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	2 cut(s)	296, 910
MspI	CCGG	2 cut(s)	476, 689
MspR9I	CCNGG	3 cut(s)	641, 690, 721
MvaI	CCWGG	2 cut(s)	641, 721
MwoI	GCNNNNNNNGC	2 cut(s)	389, 815
NciI	CCSGG	1 cut(s)	690
NdeII	GATC	3 cut(s)	70, 397, 455
NlaIII	CATG	8 cut(s)	22, 194, 281, 335, 344, 365, 602, 797
NlaIV	GGNNCC	2 cut(s)	208, 309
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	1 cut(s)	797
PagI	TCATGA	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	2 cut(s)	580, 602
PkrI	GCNGC	4 cut(s)	147, 445, 779, 811
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	639, 719
PspGI	CCWGG	2 cut(s)	639, 719
PspN4I	GGNNCC	2 cut(s)	208, 309
PspPI	GGNCC	1 cut(s)	593
RsaI	GTAC	2 cut(s)	168, 687
RsaNI	GTAC	2 cut(s)	167, 686
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	296, 910
SatI	GCNGC	4 cut(s)	146, 444, 778, 810
Sau3AI	GATC	3 cut(s)	70, 397, 455
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	3 cut(s)	641, 690, 721
SduI	GDGCHC	2 cut(s)	175, 209
SfaNI	GCATC	5 cut(s)	47, 290, 334, 686, 721
SmlI	CTYRAG	2 cut(s)	348, 813
SmoI	CTYRAG	2 cut(s)	348, 813
Sse9I	AATT	3 cut(s)	44, 113, 230
SsiI	CCGC	4 cut(s)	195, 406, 493, 777
SspMI	CTAG	3 cut(s)	68, 200, 263
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	3 cut(s)	639, 688, 719
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	5 cut(s)	166, 462, 842, 878, 895
TaqI	TCGA	1 cut(s)	250
TasI	AATT	3 cut(s)	44, 113, 230
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	296, 910
Tru9I	TTAA	2 cut(s)	296, 910
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	145, 443, 809
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	2 cut(s)	320, 329
TspGWI	ACGGA	2 cut(s)	202, 665
TspRI	CASTG	1 cut(s)	80
Van91I	CCANNNNNTGG	2 cut(s)	580, 602
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmiI	GTMKAC	2 cut(s)	216, 757
XspI	CTAG	3 cut(s)	68, 200, 263
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.