Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000330.1

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

246228 .. 246704

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000330.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgaacccctcaaacctcctccccacccagaatgtaacggtgggctgcccagtcctcgaccgctgcctcggcaaaacccaattctgcctcctctctttacctccacacagaattccctttcccctttcgccgcctccaccacctctcccactccttccgctcctcccacagtcccacgctaatcttatcctctccaacccttgtgaagatgtatacgttcaagctgtacatgatgcacaccacctactcgacatagagtgctttgttgcgagcaggaaaacccggctgcctgtgaggctaattgtgattgattccattgccgcactatttcgcagcgaatttggcaacaaccctttggatcttaagcggaggtccttcctgttcttagagatttccgggatgctgaagttgttggcgagaaagtacagcttggcggtggtggtgacgaaccaggtggttgatttatgggggaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

158

Amino Acids

17.6

Weight (kDa)

8.95

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	6 cut(s)	61, 131, 158, 321, 367, 434
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	111, 338
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	228, 425
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	2 cut(s)	224, 429
AluI	AGCT	2 cut(s)	224, 429
AlwI	GGATC	1 cut(s)	366
ApeKI	GCWGC	4 cut(s)	45, 63, 286, 333
ApoI	RAATTY	2 cut(s)	111, 338
AspS9I	GGNCC	1 cut(s)	372
AsuC2I	CCSGG	2 cut(s)	283, 397
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	32, 50, 273, 345
BciT130I	CCWGG	1 cut(s)	452
BcnI	CCSGG	2 cut(s)	283, 397
BfrI	CTTAAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	6 cut(s)	46, 64, 131, 287, 321, 334
BlsI	GCNGC	6 cut(s)	47, 65, 132, 288, 322, 335
Bme1390I	CCNGG	3 cut(s)	283, 397, 452
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmrFI	CCNGG	3 cut(s)	283, 397, 452
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	223, 390
BmuI	ACTGGG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	283, 397
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	3 cut(s)	8, 80, 152
BseXI	GCAGC	4 cut(s)	32, 50, 273, 345
Bsh1285I	CGRYCG	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	283, 396
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	6 cut(s)	61, 131, 158, 321, 367, 434
BspPI	GGATC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	358
BssNAI	GTATAC	1 cut(s)	214
Bst1107I	GTATAC	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	40, 171
BstAFI	CTTAAG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 295, 342
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	3 cut(s)	281, 395, 450
BstV1I	GCAGC	4 cut(s)	32, 50, 273, 345
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BstZ17I	GTATAC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	372
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	227, 424
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	5 cut(s)	45, 224, 286, 298, 429
CviKI_1	RGCY	5 cut(s)	45, 224, 286, 298, 429
CviQI	GTAC	2 cut(s)	227, 424
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	450
FaeI	CATG	1 cut(s)	233
FaiI	YATR	4 cut(s)	214, 231, 254, 466
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	6 cut(s)	46, 64, 131, 287, 321, 334
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	6 cut(s)	46, 64, 131, 287, 321, 334
GluI	GCNGC	6 cut(s)	46, 64, 131, 287, 321, 334
HapII	CCGG	2 cut(s)	283, 396
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	2 cut(s)	283, 396
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	164, 385
HpyCH4III	ACNGT	2 cut(s)	40, 171
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 295, 342
HpyF3I	CTNAG	1 cut(s)	385
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	165
LpnPI	CCDG	9 cut(s)	41, 63, 259, 296, 303, 392, 409, 437, 464
Lsp1109I	GCAGC	4 cut(s)	32, 50, 273, 345
LweI	GCATC	2 cut(s)	223, 390
MabI	ACCWGGT	1 cut(s)	450
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	34, 442
MalI	GATC	1 cut(s)	360
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	4 cut(s)	80, 111, 300, 338
MmeI	TCCRAC	1 cut(s)	219
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	283, 396
MspR9I	CCNGG	3 cut(s)	283, 397, 452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	69, 295, 342
NciI	CCSGG	2 cut(s)	283, 397
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	233
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	395
PkrI	GCNGC	6 cut(s)	47, 65, 132, 288, 322, 335
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	372
PspPPI	RGGWCCY	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	228, 425
RsaNI	GTAC	2 cut(s)	227, 424
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	6 cut(s)	46, 64, 131, 287, 321, 334
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	372
ScrFI	CCNGG	3 cut(s)	283, 397, 452
SetI	ASST	9 cut(s)	18, 103, 145, 219, 226, 246, 374, 431, 456
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	223, 390
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	80, 111, 300, 338
SsiI	CCGC	6 cut(s)	61, 131, 158, 321, 367, 434
StyD4I	CCNGG	3 cut(s)	281, 395, 450
TaaI	ACNGT	2 cut(s)	40, 171
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	57, 249
TasI	AATT	4 cut(s)	80, 111, 300, 338
TatI	WGTACW	2 cut(s)	226, 423
TauI	GCSGC	2 cut(s)	133, 323
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	4 cut(s)	45, 63, 286, 333
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	2 cut(s)	111, 338
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.