Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

18179682 .. 18183514

Gene Structure 3833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCCTGTGAGGCTAATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGCAACAACCCTTTGGATCTTAAGCGGAGGTCCTTCCTGTTCTTCGAGATTTCCGGGATGTTGAAGTTGTTGGCGAGAAAGTACAGCTTGGCGGTGGTGGTGATGAACCAGGTGGTTGATTTTATGGGGGAAGTAGAGGGGATAAGTGGGATGAGAGTTGGGAATTTGAGCTCCTTGCGTTCATCCGGAAGACGGGTTTGTCCTGCTTTGGGATTAGCTTGGTCACGTTGCGTGAATTCGAGGTTGTTCTTGTTTAGAAATGAGGAGATTGTTGGGAGAGAGAATGATTGGTTGGAGGATGATCTGTTCAGGCAAACAAGAAGGCGCCTTGATGTTGTTTTTGCTCCTCATTTGCCACCATCGTCGTGTGAGTTTGTAATCACAAAGCAAGGGGTGTTTGGAGTTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

170

Amino Acids

19.4

Weight (kDa)

9.94

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	16 - 73	1.5e-06	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	284
AciI	CCGC	3 cut(s)	78, 124, 191
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	95, 262, 334
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	291, 308
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	207
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	186, 270, 317
AluI	AGCT	3 cut(s)	186, 270, 317
Alw21I	GWGCWC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	43, 90
ApoI	RAATTY	3 cut(s)	95, 262, 334
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	2 cut(s)	40, 154
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	30, 102
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	2 cut(s)	40, 154
BfoI	RGCGCY	1 cut(s)	427
BfrI	CTTAAG	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	44, 78, 91
BlsI	GCNGC	3 cut(s)	45, 79, 92
Bme1390I	CCNGG	3 cut(s)	40, 154, 209
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	3 cut(s)	40, 154, 209
BpiI	GAAGAC	1 cut(s)	295
BpuMI	CCSGG	2 cut(s)	40, 154
BsaHI	GRCGYC	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 308
Bse3DI	GCAATG	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	4 cut(s)	162, 255, 281, 403
BseLI	CCNNNNNNNGG	2 cut(s)	291, 308
BseMI	GCAATG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	377, 435
BseXI	GCAGC	2 cut(s)	30, 102
BshNI	GGYRCC	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	40, 153, 285
BslI	CCNNNNNNNGG	2 cut(s)	291, 308
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp13I	TCCGGA	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	115, 400
BspACI	CCGC	3 cut(s)	78, 124, 191
BspEI	TCCGGA	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	72
BssMI	GATC	2 cut(s)	115, 400
BssNI	GRCGYC	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	424
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	28
BstF5I	GGATG	4 cut(s)	162, 255, 281, 403
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	118, 403
BstMBI	GATC	2 cut(s)	115, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 99
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	38, 152, 207
BstV1I	GCAGC	2 cut(s)	30, 102
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtsCI	GGATG	4 cut(s)	162, 255, 281, 403
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	181
CviJI	RGCY	5 cut(s)	43, 55, 186, 270, 317
CviKI_1	RGCY	5 cut(s)	43, 55, 186, 270, 317
CviQI	GTAC	1 cut(s)	181
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	2 cut(s)	117, 402
DpnII	GATC	2 cut(s)	115, 400
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
FaiI	YATR	1 cut(s)	224
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
Fnu4HI	GCNGC	3 cut(s)	44, 78, 91
FokI	GGATG	4 cut(s)	169, 262, 268, 410
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	44, 78, 91
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	3 cut(s)	44, 78, 91
HaeII	RGCGCY	1 cut(s)	427
HapII	CCGG	3 cut(s)	40, 153, 285
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	3 cut(s)	40, 153, 285
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188III	TCNNGA	2 cut(s)	145, 285
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	142, 414
HpyCH4IV	ACGT	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 99
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	424
HspAI	GCGC	1 cut(s)	424
KasI	GGCGCC	1 cut(s)	423
Kpn2I	TCCGGA	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	115, 400
LmnI	GCTCC	2 cut(s)	275, 448
Lsp1109I	GCAGC	2 cut(s)	30, 102
MabI	ACCWGGT	1 cut(s)	207
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	2 cut(s)	117, 402
MboI	GATC	2 cut(s)	115, 400
MboII	GAAGA	2 cut(s)	133, 300
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	4 cut(s)	57, 95, 262, 334
Mly113I	GGCGCC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	7 cut(s)	45, 120, 229, 333, 355, 388, 456
MroI	TCCGGA	1 cut(s)	284
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	463
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	3 cut(s)	40, 153, 285
MspR9I	CCNGG	3 cut(s)	40, 154, 209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	52, 99
NarI	GGCGCC	1 cut(s)	424
NciI	CCSGG	2 cut(s)	40, 154
NdeII	GATC	2 cut(s)	115, 400
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	45, 79, 92
PluTI	GGCGCC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	463
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	44, 78, 91
Sau3AI	GATC	2 cut(s)	115, 400
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	40, 154, 209
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	7 cut(s)	131, 188, 213, 272, 319, 328, 344
SexAI	ACCWGGT	1 cut(s)	207
SfoI	GGCGCC	1 cut(s)	425
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	4 cut(s)	57, 95, 262, 334
SsiI	CCGC	3 cut(s)	78, 124, 191
SspDI	GGCGCC	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	3 cut(s)	38, 152, 207
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	144, 338
TasI	AATT	4 cut(s)	57, 95, 262, 334
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	2 cut(s)	43, 90
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	218, 270
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	3 cut(s)	95, 262, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.