Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Forward (+)

23498139 .. 23500384

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGATCACCGCCTTGCTCGTTCTCAAGTGCGCTCCCGAAGCTTCTGATCCCGTCATCCTCTCCAACGCTTCGGACGTCTCTCACTTCGGTTATTTCCAGCGATCTAGCGTCAAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCTAGCCGAACCCCTCCTTCCCAACGCCAGTCTGTTCAACACGAAGAGTACAAGGTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTACCCTGTTCGAAGTGCTTTCTCTCTTCTCAATCAGGTCCTAGATGAGTACCAGAAGAGTTTTGGTGAGTCATGGAGGTCTGCAAAAGAAGACTCCAATCAGCCTTGGCCATACTTAACCGAAGCTTTAAACAAATTTCAGGACCCAGCAGAGGCTGATAAGCTGTTGAAAATCCAGAGGGAGTTGGATGAGACAAAGATTATCCTTCATAAAACCATTGATAGTGTTCTAGCCCGTGGTGAGAAGCTGGACAGCCTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATCACAGATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

199

Amino Acids

22.54

Weight (kDa)

6.96

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	47 - 112	6.7e-15	Regulated-SNARE-like domain
Synaptobrevin	PF00957	140 - 193	5e-14	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	12, 233
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	389, 577
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	197, 305, 589
AfiI	CCNNNNNNNGG	2 cut(s)	232, 406
AgsI	TTSAA	2 cut(s)	185, 424
AluBI	AGCT	5 cut(s)	44, 380, 418, 502, 525
AluI	AGCT	5 cut(s)	44, 380, 418, 502, 525
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	2 cut(s)	85, 440
AlwI	GGATC	1 cut(s)	44
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	223, 362
ApoI	RAATTY	2 cut(s)	389, 577
AspLEI	GCGC	2 cut(s)	35, 233
AspS9I	GGNCC	2 cut(s)	292, 397
AsuHPI	GGTGA	2 cut(s)	332, 506
AsuII	TTCGAA	1 cut(s)	265
AsuNHI	GCTAGC	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	292, 397
BalI	TGGCCA	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	85, 440
BfaI	CTAG	5 cut(s)	108, 150, 296, 485, 512
Bme18I	GGWCC	2 cut(s)	292, 397
BmgT120I	GGNCC	2 cut(s)	292, 397
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	1 cut(s)	551
BmtI	GCTAGC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
Bpu14I	TTCGAA	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	359, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 406
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	359, 490
BseGI	GGATG	2 cut(s)	57, 448
BseLI	CCNNNNNNNGG	2 cut(s)	232, 406
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	225, 364
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	232, 406
BsmAI	GTCTC	2 cut(s)	85, 440
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	225, 364
Bsp119I	TTCGAA	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	6, 49, 104, 250
BspACI	CCGC	2 cut(s)	12, 233
BspANI	GGCC	2 cut(s)	225, 364
BspCNI	CTCAG	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	399
BspOI	GCTAGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	515
BspT104I	TTCGAA	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	359, 490
BssMI	GATC	4 cut(s)	6, 49, 104, 250
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	4 cut(s)	186, 285, 305, 515
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	151, 564
BstDEI	CTNAG	1 cut(s)	526
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	57, 448
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	2 cut(s)	35, 233
BstKTI	GATC	4 cut(s)	9, 52, 107, 253
BstMAI	GTCTC	2 cut(s)	85, 440
BstMBI	GATC	4 cut(s)	6, 49, 104, 250
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	225, 364
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	57, 448
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	151, 564
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	2 cut(s)	35, 233
Cfr13I	GGNCC	2 cut(s)	292, 397
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	196, 304, 588
CviAII	CATG	4 cut(s)	244, 327, 538, 582
CviQI	GTAC	3 cut(s)	196, 304, 588
DdeI	CTNAG	1 cut(s)	526
DpnI	GATC	4 cut(s)	8, 51, 106, 252
DpnII	GATC	4 cut(s)	6, 49, 104, 250
DraI	TTTAAA	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	362
Eam1104I	CTCTTC	4 cut(s)	186, 285, 305, 515
EarI	CTCTTC	4 cut(s)	186, 285, 305, 515
Ecl136II	GAGCTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	527
Eco47I	GGWCC	2 cut(s)	292, 397
Eco53kI	GAGCTC	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	525
EcoO109I	RGGNCCY	2 cut(s)	292, 397
EcoT14I	CCWWGG	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	359
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	4 cut(s)	247, 330, 541, 585
FaiI	YATR	6 cut(s)	245, 328, 367, 465, 539, 583
FatI	CATG	4 cut(s)	243, 326, 537, 581
FokI	GGATG	2 cut(s)	44, 455
FriOI	GRGCYC	1 cut(s)	527
FspBI	CTAG	5 cut(s)	108, 150, 296, 485, 512
GlaI	GCGC	2 cut(s)	34, 232
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	225, 364
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	35, 233
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	247, 330, 541, 585
Hin6I	GCGC	2 cut(s)	33, 231
HinP1I	GCGC	2 cut(s)	33, 231
HindIII	AAGCTT	2 cut(s)	42, 378
HinfI	GANTC	2 cut(s)	323, 347
HphI	GGTGA	2 cut(s)	332, 506
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	3 cut(s)	49, 76, 529
Hpy188III	TCNNGA	3 cut(s)	38, 395, 430
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	174, 470
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	526
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	247, 330, 541, 585
HspAI	GCGC	2 cut(s)	33, 231
Kzo9I	GATC	4 cut(s)	6, 49, 104, 250
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	9 cut(s)	113, 188, 273, 275, 320, 380, 414, 443, 488
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	5 cut(s)	108, 150, 296, 485, 512
MaeII	ACGT	1 cut(s)	78
MalI	GATC	4 cut(s)	8, 51, 106, 252
MboI	GATC	4 cut(s)	6, 49, 104, 250
MboII	GAAGA	7 cut(s)	16, 203, 272, 322, 356, 532, 580
MhlI	GDGCHC	1 cut(s)	527
MlsI	TGGCCA	1 cut(s)	364
MluCI	AATT	2 cut(s)	389, 577
MluNI	TGGCCA	1 cut(s)	364
MlyI	GAGTC	2 cut(s)	332, 341
MmeI	TCCRAC	2 cut(s)	90, 420
MnlI	CCTC	5 cut(s)	71, 171, 324, 400, 426
Mox20I	TGGCCA	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	364
MseI	TTAA	2 cut(s)	371, 383
Msp20I	TGGCCA	1 cut(s)	364
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	4 cut(s)	6, 49, 104, 250
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	4 cut(s)	247, 330, 541, 585
NlaIV	GGNNCC	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PleI	GAGTC	2 cut(s)	331, 341
PpsI	GAGTC	2 cut(s)	331, 341
PpuMI	RGGWCCY	2 cut(s)	292, 397
Psp124BI	GAGCTC	1 cut(s)	527
Psp5II	RGGWCCY	2 cut(s)	292, 397
PspFI	CCCAGC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	292, 397
PspPPI	RGGWCCY	2 cut(s)	292, 397
PstNI	CAGNNNCTG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	197, 305, 589
RsaNI	GTAC	3 cut(s)	196, 304, 588
SacI	GAGCTC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	371, 383
Sau3AI	GATC	4 cut(s)	6, 49, 104, 250
Sau96I	GGNCC	2 cut(s)	292, 397
SchI	GAGTC	2 cut(s)	332, 341
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	9 cut(s)	46, 81, 204, 294, 335, 382, 420, 504, 527
SfaNI	GCATC	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	265
SinI	GGWCC	2 cut(s)	292, 397
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	389, 577
SsiI	CCGC	2 cut(s)	12, 233
SspMI	CTAG	5 cut(s)	108, 150, 296, 485, 512
SstI	GAGCTC	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	265
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	389, 577
TatI	WGTACW	2 cut(s)	195, 587
Tru1I	TTAA	2 cut(s)	371, 383
Tru9I	TTAA	2 cut(s)	371, 383
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	17, 232, 452, 570
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	292, 397
XapI	RAATTY	2 cut(s)	389, 577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XspI	CTAG	5 cut(s)	108, 150, 296, 485, 512
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.