Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Forward (+)

630046 .. 632687

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGGTCACGGCGCTGCTGGTCCTCAAGTGCAGCCCGGAAGGATCCGACCCGGTCATACTGGCCAACGCCTCCGACACCAGCCATTTCGGCTTCTTCCAGAGGTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGCCGCACCGTCGCCAAACGCACCCCTCAAGGTCAACGCCAGTCTGTCAAACACGAAGAGTATAAAGTGCATGCTTACAACAGCAATGGTCTCTGTGCATTGGGATTCATGGATGATCACTATCCAGTAAGGAGTGCGTTTTCGCTGCTCAACCAGGTGTTAGATGAGTACCAGAAGAAATTTGGTGAATCTTGGAGGACTGCGCAAGAGGACAGCACTGAATCCTGGCCTTACCTAAATGAGGCTCTAACCAAATTCCAGGACCCTGCAGAAGCTGATAAGTTGTTGAAAATTCAGAGGGAATTGGATGAAACAAAGATTATTCTCCATAAAACTATTGATAGTGTACTTGCACGAGGTGAGAAACTGGACAGCTTGGTTGAAAAGAGTTCGGATCTTAGCACAGCATCACAGATGTTCTACAAGCAGGCAAAGAAGACCAATTCTTGTTGTACCATACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

200

Amino Acids

22.51

Weight (kDa)

6.96

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	47 - 112	2.6e-15	Regulated-SNARE-like domain
Synaptobrevin	PF00957	140 - 193	6.5e-14	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	339
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	3 cut(s)	39, 52, 537
AcoI	YGGCCR	2 cut(s)	63, 136
AcsI	RAATTY	3 cut(s)	314, 389, 426
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	305, 483, 589
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	424, 518
AjnI	CCWGG	3 cut(s)	288, 359, 393
AluBI	AGCT	2 cut(s)	410, 510
AluI	AGCT	2 cut(s)	410, 510
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	39, 52, 537
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	63, 136, 362
ApeKI	GCWGC	3 cut(s)	16, 33, 280
ApoI	RAATTY	3 cut(s)	314, 389, 426
AspLEI	GCGC	2 cut(s)	16, 340
AspS9I	GGNCC	3 cut(s)	22, 105, 397
AsuC2I	CCSGG	2 cut(s)	38, 53
AsuHPI	GGTGA	2 cut(s)	332, 506
AvaII	GGWCC	3 cut(s)	22, 105, 397
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	2 cut(s)	121, 578
BbvI	GCAGC	3 cut(s)	3, 45, 267
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	290, 361, 395
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	2 cut(s)	38, 53
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	4 cut(s)	17, 34, 139, 281
BlsI	GCNGC	4 cut(s)	18, 35, 140, 282
Bme1390I	CCNGG	5 cut(s)	38, 53, 290, 361, 395
Bme18I	GGWCC	3 cut(s)	22, 105, 397
BmgT120I	GGNCC	3 cut(s)	22, 105, 397
BmiI	GGNNCC	2 cut(s)	46, 399
BmrFI	CCNGG	5 cut(s)	38, 53, 290, 361, 395
BmsI	GCATC	1 cut(s)	551
BpiI	GAAGAC	2 cut(s)	121, 578
BpuEI	CTTGAG	2 cut(s)	11, 147
BpuMI	CCSGG	2 cut(s)	38, 53
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	4 cut(s)	66, 175, 260, 507
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	3 cut(s)	290, 361, 395
BseGI	GGATG	2 cut(s)	253, 448
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	4 cut(s)	66, 175, 260, 507
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	3, 45, 267
BsgI	GTGCAG	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	65, 138, 364
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	38, 53
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	65, 138, 364
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	44, 250, 529
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	3 cut(s)	65, 138, 364
BspLI	GGNNCC	2 cut(s)	46, 399
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	3 cut(s)	39, 52, 537
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	4 cut(s)	66, 175, 260, 507
BssMI	GATC	3 cut(s)	44, 250, 529
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	3 cut(s)	290, 361, 395
Bst4CI	ACNGT	2 cut(s)	145, 597
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	207, 564
BstDEI	CTNAG	1 cut(s)	533
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	253, 448
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 340
BstKTI	GATC	3 cut(s)	47, 253, 532
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	44, 250, 529
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	3 cut(s)	290, 361, 395
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	5 cut(s)	36, 51, 288, 359, 393
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	3 cut(s)	3, 45, 267
BstV2I	GAAGAC	2 cut(s)	121, 578
BstX2I	RGATCY	2 cut(s)	44, 529
BstYI	RGATCY	2 cut(s)	44, 529
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	65, 138, 364
BtsCI	GGATG	2 cut(s)	253, 448
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	207, 564
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	2 cut(s)	16, 340
Cfr13I	GGNCC	3 cut(s)	22, 105, 397
CseI	GACGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	304, 482, 588
CviAII	CATG	2 cut(s)	206, 244
CviJI	RGCY	9 cut(s)	36, 65, 84, 93, 138, 364, 380, 410, 510
CviKI_1	RGCY	9 cut(s)	36, 65, 84, 93, 138, 364, 380, 410, 510
CviQI	GTAC	3 cut(s)	304, 482, 588
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	3 cut(s)	46, 252, 531
DpnII	GATC	3 cut(s)	44, 250, 529
DraIII	CACNNNGTG	1 cut(s)	494
EaeI	YGGCCR	2 cut(s)	63, 136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	3 cut(s)	22, 105, 397
Eco52I	CGGCCG	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	3 cut(s)	288, 359, 393
FaeI	CATG	2 cut(s)	209, 247
FaiI	YATR	6 cut(s)	59, 198, 207, 245, 465, 593
FatI	CATG	2 cut(s)	205, 243
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	17, 34, 139, 281
FokI	GGATG	2 cut(s)	260, 455
Fsp4HI	GCNGC	4 cut(s)	17, 34, 139, 281
FspI	TGCGCA	1 cut(s)	339
GlaI	GCGC	2 cut(s)	15, 339
GluI	GCNGC	4 cut(s)	17, 34, 139, 281
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	65, 138, 364
HapII	CCGG	2 cut(s)	38, 53
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	16, 340
Hin1II	CATG	2 cut(s)	209, 247
Hin6I	GCGC	2 cut(s)	14, 338
HinP1I	GCGC	2 cut(s)	14, 338
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	3 cut(s)	240, 323, 356
HpaII	CCGG	2 cut(s)	38, 53
HphI	GGTGA	2 cut(s)	332, 506
Hpy166II	GTNNAC	2 cut(s)	170, 482
Hpy188I	TCNGA	4 cut(s)	49, 76, 432, 529
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	2 cut(s)	170, 482
Hpy99I	CGWCG	2 cut(s)	137, 149
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	145, 597
HpyCH4V	TGCA	5 cut(s)	33, 205, 233, 404, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	533
Hsp92II	CATG	2 cut(s)	209, 247
HspAI	GCGC	2 cut(s)	14, 338
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	44, 250, 529
Lsp1109I	GCAGC	3 cut(s)	3, 45, 267
LweI	GCATC	1 cut(s)	551
MabI	ACCWGGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	46, 252, 531
MboI	GATC	3 cut(s)	44, 250, 529
MboII	GAAGA	5 cut(s)	88, 121, 203, 322, 583
MflI	RGATCY	2 cut(s)	44, 529
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	5 cut(s)	314, 389, 426, 437, 577
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	72, 99
MnlI	CCTC	9 cut(s)	35, 82, 96, 171, 324, 337, 370, 426, 485
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	38, 53
MspR9I	CCNGG	5 cut(s)	38, 53, 290, 361, 395
MvaI	CCWGG	3 cut(s)	290, 361, 395
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	2 cut(s)	38, 53
NdeII	GATC	3 cut(s)	44, 250, 529
NlaIII	CATG	2 cut(s)	209, 247
NlaIV	GGNNCC	2 cut(s)	46, 399
NmuCI	GTSAC	1 cut(s)	7
NsbI	TGCGCA	1 cut(s)	339
NspI	RCATGY	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	240, 323, 356
PflFI	GACNNNGTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	4 cut(s)	18, 35, 140, 282
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	3 cut(s)	288, 359, 393
PspGI	CCWGG	3 cut(s)	288, 359, 393
PspN4I	GGNNCC	2 cut(s)	46, 399
PspPI	GGNCC	3 cut(s)	22, 105, 397
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	44, 529
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	3 cut(s)	305, 483, 589
RsaNI	GTAC	3 cut(s)	304, 482, 588
SatI	GCNGC	4 cut(s)	17, 34, 139, 281
Sau3AI	GATC	3 cut(s)	44, 250, 529
Sau96I	GGNCC	3 cut(s)	22, 105, 397
ScrFI	CCNGG	5 cut(s)	38, 53, 290, 361, 395
SetI	ASST	8 cut(s)	9, 107, 169, 294, 372, 412, 496, 512
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	3 cut(s)	22, 105, 397
SmlI	CTYRAG	2 cut(s)	26, 162
SmoI	CTYRAG	2 cut(s)	26, 162
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	5 cut(s)	314, 389, 426, 437, 577
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	5 cut(s)	36, 51, 288, 359, 393
TaaI	ACNGT	2 cut(s)	145, 597
TasI	AATT	5 cut(s)	314, 389, 426, 437, 577
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	240, 323, 356
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	16, 33, 280
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	17, 112, 232, 459
TspRI	CASTG	1 cut(s)	358
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	3 cut(s)	22, 105, 397
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	314, 389, 426
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.