Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009954.1

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Reverse (-)

17502 .. 19560

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009954.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggccttgctggtcatcaagtgcaactcggaaggatccgacccggtcatattggccaacgccttcgatacctcccacttcggctacttccagaggtccagcgtcaaggagttcatcgtcttcgtcggccacacagttaccaaacacacccctccccggtcaatgccagtccgtcaagcccgaatgtctattttctccggaaccggtcgccggattccagtcaccgttcgccggattccggtcaccggttgccggcgccctgccactggtcaccggaggccggcaagattattcaagaagcatcaagacagctcgatccgcttctcggacccagcgacgccgcgatctgacccgacttcatcttctgatttcggctacaccatccacgtcgagattgtcaagcctaacatctccatggggaaggaatttccagaaccgaacccagtccaactcgccgactcggagattaagaacccaccggttagtatggccgtgatcgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

168

Amino Acids

18.67

Weight (kDa)

10.16

Isoelectric Point (pI)

63.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	1 cut(s)	343
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	2 cut(s)	319, 341
AclWI	GGATC	3 cut(s)	30, 43, 310
AcoI	YGGCCR	3 cut(s)	54, 127, 489
AcsI	RAATTY	1 cut(s)	425
AcyI	GRCGYC	2 cut(s)	256, 338
AfiI	CCNNNNNNNGG	9 cut(s)	156, 210, 231, 238, 245, 252, 266, 280, 325
AgeI	ACCGGT	3 cut(s)	203, 245, 478
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	388
AluBI	AGCT	2 cut(s)	312, 502
AluI	AGCT	2 cut(s)	312, 502
AlwI	GGATC	3 cut(s)	30, 43, 310
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	5 cut(s)	3, 54, 127, 278, 489
ApoI	RAATTY	1 cut(s)	425
AsiGI	ACCGGT	3 cut(s)	203, 245, 478
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	96, 328
AsuC2I	CCSGG	2 cut(s)	44, 157
AsuHPI	GGTGA	3 cut(s)	214, 235, 263
AvaII	GGWCC	2 cut(s)	96, 328
BalI	TGGCCA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	112
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	476
BcnI	CCSGG	2 cut(s)	44, 157
BfmI	CTRYAG	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	44, 157
Bme18I	GGWCC	2 cut(s)	96, 328
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	96, 328
BmiI	GGNNCC	4 cut(s)	37, 202, 257, 330
BmrFI	CCNGG	2 cut(s)	44, 157
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	112
BpuMI	CCSGG	2 cut(s)	44, 157
BsaHI	GRCGYC	2 cut(s)	256, 338
BsaJI	CCNNGG	2 cut(s)	155, 414
BsaWI	WCCGGW	6 cut(s)	197, 203, 238, 245, 273, 478
Bsc4I	CCNNNNNNNGG	9 cut(s)	156, 210, 231, 238, 245, 252, 266, 280, 325
Bse118I	RCCGGY	5 cut(s)	203, 245, 252, 280, 478
Bse1I	ACTGG	4 cut(s)	167, 218, 271, 443
BseAI	TCCGGA	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	155, 414
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	9 cut(s)	156, 210, 231, 238, 245, 252, 266, 280, 325
BseNI	ACTGG	4 cut(s)	167, 218, 271, 443
BseYI	CCCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	5 cut(s)	5, 56, 129, 280, 491
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	3 cut(s)	203, 245, 478
BsiEI	CGRYCG	1 cut(s)	208
BslI	CCNNNNNNNGG	9 cut(s)	156, 210, 231, 238, 245, 252, 266, 280, 325
BsnI	GGCC	5 cut(s)	5, 56, 129, 280, 491
Bsp13I	TCCGGA	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	35, 315, 344, 495
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	2 cut(s)	319, 341
BspANI	GGCC	5 cut(s)	5, 56, 129, 280, 491
BspEI	TCCGGA	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	37, 202, 257, 330
BspPI	GGATC	3 cut(s)	30, 43, 310
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	5 cut(s)	203, 245, 252, 280, 478
BsrI	ACTGG	4 cut(s)	167, 218, 271, 443
BssAI	RCCGGY	5 cut(s)	203, 245, 252, 280, 478
BssECI	CCNNGG	2 cut(s)	155, 414
BssMI	GATC	4 cut(s)	35, 315, 344, 495
BssNI	GRCGYC	2 cut(s)	256, 338
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	136, 226
BstACI	GRCGYC	2 cut(s)	256, 338
BstC8I	GCNNGC	2 cut(s)	254, 282
BstDSI	CCRYGG	1 cut(s)	414
BstEII	GGTNACC	2 cut(s)	241, 269
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	4 cut(s)	38, 318, 347, 498
BstMBI	GATC	4 cut(s)	35, 315, 344, 495
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstPI	GGTNACC	2 cut(s)	241, 269
BstSCI	CCNGG	2 cut(s)	42, 155
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	5 cut(s)	5, 56, 129, 280, 491
BtgI	CCRYGG	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	254, 282
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	5 cut(s)	203, 245, 252, 280, 478
Cfr13I	GGNCC	2 cut(s)	96, 328
CseI	GACGC	2 cut(s)	91, 346
CspAI	ACCGGT	3 cut(s)	203, 245, 478
CviAII	CATG	1 cut(s)	415
DinI	GGCGCC	1 cut(s)	257
DpnI	GATC	4 cut(s)	37, 317, 346, 497
DpnII	GATC	4 cut(s)	35, 315, 344, 495
EaeI	YGGCCR	3 cut(s)	54, 127, 489
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	96, 328
Eco91I	GGTNACC	2 cut(s)	241, 269
EcoO65I	GGTNACC	2 cut(s)	241, 269
EcoT14I	CCWWGG	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	257
EheI	GGCGCC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	1 cut(s)	418
FaiI	YATR	3 cut(s)	50, 416, 488
FatI	CATG	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	341
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	5 cut(s)	5, 56, 129, 280, 491
HgaI	GACGC	2 cut(s)	91, 346
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	2 cut(s)	256, 338
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	214, 235, 458
HphI	GGTGA	3 cut(s)	214, 235, 263
Hpy188I	TCNGA	6 cut(s)	31, 40, 328, 349, 367, 463
Hpy188III	TCNNGA	6 cut(s)	91, 198, 295, 305, 391, 431
Hpy99I	CGWCG	3 cut(s)	128, 340, 392
HpyAV	CCTTC	3 cut(s)	26, 73, 415
HpyCH4III	ACNGT	2 cut(s)	136, 226
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	2 cut(s)	256, 338
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	1 cut(s)	256
KasI	GGCGCC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	197
KroI	GCCGGC	2 cut(s)	252, 280
KroNI	GCCGGC	2 cut(s)	254, 282
Kzo9I	GATC	4 cut(s)	35, 315, 344, 495
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	136, 220, 241, 269
MalI	GATC	4 cut(s)	37, 317, 346, 497
MboI	GATC	4 cut(s)	35, 315, 344, 495
MboII	GAAGA	2 cut(s)	112, 354
MflI	RGATCY	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	425
MluNI	TGGCCA	1 cut(s)	56
Mly113I	GGCGCC	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	63, 472
MnlI	CCTC	4 cut(s)	82, 87, 162, 270
Mox20I	TGGCCA	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	197
MroNI	GCCGGC	2 cut(s)	252, 280
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	44, 157
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	318
NaeI	GCCGGC	2 cut(s)	254, 282
NarI	GGCGCC	1 cut(s)	256
NciI	CCSGG	2 cut(s)	44, 157
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	35, 315, 344, 495
NgoMIV	GCCGGC	2 cut(s)	252, 280
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	4 cut(s)	37, 202, 257, 330
NmuCI	GTSAC	3 cut(s)	220, 241, 269
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdiI	GCCGGC	2 cut(s)	254, 282
PfeI	GAWTC	2 cut(s)	214, 235
PflFI	GACNNNGTC	1 cut(s)	44
PinAI	ACCGGT	3 cut(s)	203, 245, 478
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	452
PluTI	GGCGCC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	452
PspEI	GGTNACC	2 cut(s)	241, 269
PspFI	CCCAGC	1 cut(s)	331
PspN4I	GGNNCC	4 cut(s)	37, 202, 257, 330
PspPI	GGNCC	2 cut(s)	96, 328
PsuI	RGATCY	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	4 cut(s)	35, 315, 344, 495
Sau96I	GGNCC	2 cut(s)	96, 328
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	44, 157
SetI	ASST	5 cut(s)	74, 98, 314, 390, 504
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	503
SfoI	GGCGCC	1 cut(s)	257
SinI	GGWCC	2 cut(s)	96, 328
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	2 cut(s)	319, 341
SspDI	GGCGCC	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	42, 155
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	136, 226
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	66, 314, 390, 498
TasI	AATT	1 cut(s)	425
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	214, 235
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	3 cut(s)	220, 241, 269
Tsp45I	GTSAC	3 cut(s)	220, 241, 269
TspDTI	ATGAA	2 cut(s)	103, 348
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	96, 328
XapI	RAATTY	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.