Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016521.1

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Reverse (-)

297 .. 1338

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ctgaatcgccggaacgcgatcagaatagtcgtctgtgagtcacaatttggtacagatcaccaccttcgccgcgacgaagatcacgaccttactggtcgtcaatgcaaaccggaaggatccaacctggtcatattggccatcgcctctgatacctcccacttcggctacttccagaggtctagtgtcaaggagttcatcatcttcgtcggtcgcatcatcgccaaacgcacccctcccgggggcaataaacctctccggccccatatgagatctacgacaacttctttggtgacttctgacgagatttctggtgacctctttgcctctttggggacttccgacgaggtttttagagaagtccagtgggtggcggtcggtgaccggaatcaggcagctggtgacccaaattcggtggccagttatgggactccggcaaagtctcctatggcttctctctctatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

154

Amino Acids

16.87

Weight (kDa)

8.04

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	2 cut(s)	17, 72
AciI	CCGC	2 cut(s)	70, 371
AclWI	GGATC	2 cut(s)	111, 124
AcoI	YGGCCR	2 cut(s)	135, 414
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	8 cut(s)	237, 238, 239, 330, 367, 388, 409, 423
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	111, 124
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	135, 257, 414
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	406
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AspS9I	GGNCC	1 cut(s)	258
AsuC2I	CCSGG	2 cut(s)	237, 238
AsuHPI	GGTGA	5 cut(s)	50, 301, 323, 389, 410
AvaI	CYCGRG	1 cut(s)	236
BalI	TGGCCA	2 cut(s)	137, 416
BamHI	GGATCC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	2 cut(s)	237, 238
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	180
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	2 cut(s)	70, 393
BlsI	GCNGC	2 cut(s)	71, 394
Bme1390I	CCNGG	3 cut(s)	125, 237, 238
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	118, 260
BmrFI	CCNGG	3 cut(s)	125, 237, 238
BmsI	GCATC	1 cut(s)	222
BpuMI	CCSGG	2 cut(s)	237, 238
BsaJI	CCNNGG	2 cut(s)	236, 237
BsaWI	WCCGGW	2 cut(s)	109, 381
Bsc4I	CCNNNNNNNGG	8 cut(s)	237, 238, 239, 330, 367, 388, 409, 423
Bse1I	ACTGG	3 cut(s)	97, 361, 417
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	236, 237
BseLI	CCNNNNNNNGG	8 cut(s)	237, 238, 239, 330, 367, 388, 409, 423
BseNI	ACTGG	3 cut(s)	97, 361, 417
BseXI	GCAGC	1 cut(s)	404
Bsh1236I	CGCG	2 cut(s)	17, 72
Bsh1285I	CGRYCG	2 cut(s)	211, 375
BshFI	GGCC	3 cut(s)	137, 259, 416
BsiEI	CGRYCG	2 cut(s)	211, 375
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	6 cut(s)	10, 110, 237, 256, 382, 431
BslFI	GGGAC	2 cut(s)	346, 439
BslI	CCNNNNNNNGG	8 cut(s)	237, 238, 239, 330, 367, 388, 409, 423
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	2 cut(s)	346, 439
BsnI	GGCC	3 cut(s)	137, 259, 416
BsoBI	CYCGRG	1 cut(s)	236
Bsp143I	GATC	5 cut(s)	18, 55, 79, 116, 269
BspACI	CCGC	2 cut(s)	70, 371
BspANI	GGCC	3 cut(s)	137, 259, 416
BspFNI	CGCG	2 cut(s)	17, 72
BspLI	GGNNCC	2 cut(s)	118, 260
BspPI	GGATC	2 cut(s)	111, 124
BsrI	ACTGG	3 cut(s)	97, 361, 417
BssECI	CCNNGG	2 cut(s)	236, 237
BssMI	GATC	5 cut(s)	18, 55, 79, 116, 269
Bst2UI	CCWGG	1 cut(s)	125
BstEII	GGTNACC	3 cut(s)	311, 377, 398
BstFNI	CGCG	2 cut(s)	17, 72
BstKTI	GATC	5 cut(s)	21, 58, 82, 119, 272
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	5 cut(s)	18, 55, 79, 116, 269
BstMCI	CGRYCG	2 cut(s)	211, 375
BstNI	CCWGG	1 cut(s)	125
BstPI	GGTNACC	3 cut(s)	311, 377, 398
BstSCI	CCNGG	3 cut(s)	123, 235, 236
BstUI	CGCG	2 cut(s)	17, 72
BstV1I	GCAGC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	116, 269
BstYI	RGATCY	2 cut(s)	116, 269
BsuRI	GGCC	3 cut(s)	137, 259, 416
BtgZI	GCGATG	2 cut(s)	124, 202
BtsIMutI	CAGTG	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	258
Cfr9I	CCCGGG	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	51
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviJI	RGCY	6 cut(s)	137, 165, 259, 395, 416, 449
CviKI_1	RGCY	6 cut(s)	137, 165, 259, 395, 416, 449
CviQI	GTAC	1 cut(s)	51
DpnI	GATC	5 cut(s)	20, 57, 81, 118, 271
DpnII	GATC	5 cut(s)	18, 55, 79, 116, 269
EaeI	YGGCCR	2 cut(s)	135, 414
Eco88I	CYCGRG	1 cut(s)	236
Eco91I	GGTNACC	3 cut(s)	311, 377, 398
EcoO65I	GGTNACC	3 cut(s)	311, 377, 398
EcoRII	CCWGG	1 cut(s)	123
FaiI	YATR	6 cut(s)	131, 264, 266, 423, 446, 461
FaqI	GGGAC	2 cut(s)	346, 439
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	70, 393
Fsp4HI	GCNGC	2 cut(s)	70, 393
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	70, 393
HaeIII	GGCC	3 cut(s)	137, 259, 416
HapII	CCGG	6 cut(s)	10, 110, 237, 256, 382, 431
HinfI	GANTC	4 cut(s)	4, 38, 385, 427
HpaII	CCGG	6 cut(s)	10, 110, 237, 256, 382, 431
HphI	GGTGA	5 cut(s)	50, 301, 323, 389, 410
Hpy188I	TCNGA	4 cut(s)	23, 148, 298, 340
Hpy188III	TCNNGA	2 cut(s)	83, 172
Hpy99I	CGWCG	3 cut(s)	77, 209, 344
HpyAV	CCTTC	2 cut(s)	74, 107
HpyCH4V	TGCA	1 cut(s)	105
Kzo9I	GATC	5 cut(s)	18, 55, 79, 116, 269
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	1 cut(s)	222
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	5 cut(s)	39, 289, 311, 377, 398
MalI	GATC	5 cut(s)	20, 57, 81, 118, 271
MboI	GATC	5 cut(s)	18, 55, 79, 116, 269
MboII	GAAGA	2 cut(s)	89, 193
MflI	RGATCY	2 cut(s)	116, 269
MlsI	TGGCCA	2 cut(s)	137, 416
MluCI	AATT	2 cut(s)	44, 406
MluNI	TGGCCA	2 cut(s)	137, 416
MlyI	GAGTC	2 cut(s)	47, 421
MmeI	TCCRAC	2 cut(s)	144, 363
MnlI	CCTC	8 cut(s)	154, 163, 168, 243, 261, 326, 334, 337
Mox20I	TGGCCA	2 cut(s)	137, 416
MscI	TGGCCA	2 cut(s)	137, 416
Msp20I	TGGCCA	2 cut(s)	137, 416
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	6 cut(s)	10, 110, 237, 256, 382, 431
MspR9I	CCNGG	3 cut(s)	125, 237, 238
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	2 cut(s)	17, 72
NciI	CCSGG	2 cut(s)	237, 238
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	5 cut(s)	18, 55, 79, 116, 269
NlaIV	GGNNCC	2 cut(s)	118, 260
NmuCI	GTSAC	5 cut(s)	39, 289, 311, 377, 398
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	4, 385
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	71, 394
PleI	GAGTC	2 cut(s)	46, 421
PpsI	GAGTC	2 cut(s)	46, 421
Psp6I	CCWGG	1 cut(s)	123
PspEI	GGTNACC	3 cut(s)	311, 377, 398
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	118, 260
PspPI	GGNCC	1 cut(s)	258
PsuI	RGATCY	2 cut(s)	116, 269
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SatI	GCNGC	2 cut(s)	70, 393
Sau3AI	GATC	5 cut(s)	18, 55, 79, 116, 269
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	47, 421
ScrFI	CCNGG	3 cut(s)	125, 237, 238
SetI	ASST	9 cut(s)	66, 90, 126, 155, 179, 253, 318, 348, 397
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	44, 406
SsiI	CCGC	2 cut(s)	70, 371
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	123, 235, 236
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	44, 406
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	4, 385
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	5 cut(s)	39, 289, 311, 377, 398
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	5 cut(s)	39, 289, 311, 377, 398
TspDTI	ATGAA	1 cut(s)	184
TspMI	CCCGGG	1 cut(s)	236
TspRI	CASTG	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	406
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.