RLG00000019563

Belongs to the synaptobrevin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
53621316 .. 53625884
4569 bp
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UTR
Exon/CDS
Intron
RLM00000019563

Sequence Viewer

Length: 330 bp
ATGGCCTTGCTGGTCATCAAGTGCAACCCGGAAGGATCCGACCCGGTCATATTGGCCAACGCCTTCGATACCTCCCACTTCGGCTACTTCCAGAGGTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGCCGCACAGTTACCAAACACACCCCTCCCCGGTCAACGCCAGTCCGTCAAGCCCGAATGTCTAATCCTATATCAGCAGGATTCTATAACCATAACAGAACAGGATATATCAATGATACTATAACCATAACAGAACAGATATATATATATATATATAAAGATATATATATATATATATATATATATATATATATATATATATAA

Protein Analysis

110

Amino Acids

12.7

Weight (kDa)

9.01

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AclWI GGATC 2 cut(s) 30, 43
AcoI YGGCCR 2 cut(s) 54, 127
AfiI CCNNNNNNNGG 1 cut(s) 156
AlwI GGATC 2 cut(s) 30, 43
AoxI GGCC 3 cut(s) 3, 54, 127
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 3 cut(s) 29, 44, 157
AvaII GGWCC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 112
BcnI CCSGG 3 cut(s) 29, 44, 157
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 3 cut(s) 29, 44, 157
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 3 cut(s) 29, 44, 157
BpiI GAAGAC 1 cut(s) 112
BpuMI CCSGG 3 cut(s) 29, 44, 157
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 5, 56, 129
BsiEI CGRYCG 1 cut(s) 130
BsiSI CCGG 3 cut(s) 29, 44, 157
BslI CCNNNNNNNGG 1 cut(s) 156
BsnI GGCC 3 cut(s) 5, 56, 129
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 1 cut(s) 130
BspANI GGCC 3 cut(s) 5, 56, 129
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 2 cut(s) 30, 43
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 136
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstMCI CGRYCG 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 27, 42, 155
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BstZI CGGCCG 1 cut(s) 127
BsuRI GGCC 3 cut(s) 5, 56, 129
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 91
CviJI RGCY 5 cut(s) 5, 56, 84, 129, 179
CviKI_1 RGCY 5 cut(s) 5, 56, 84, 129, 179
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
EaeI YGGCCR 2 cut(s) 54, 127
EagI CGGCCG 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 96
Eco52I CGGCCG 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 3 cut(s) 5, 56, 129
HapII CCGG 3 cut(s) 29, 44, 157
HgaI GACGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 1 cut(s) 207
HpaII CCGG 3 cut(s) 29, 44, 157
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 26, 73
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 35
LpnPI CCDG 8 cut(s) 42, 57, 104, 112, 170, 180, 189, 213
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 3 cut(s) 82, 87, 162
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 3 cut(s) 29, 44, 157
MspR9I CCNGG 3 cut(s) 29, 44, 157
NciI CCSGG 3 cut(s) 29, 44, 157
NdeII GATC 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 44
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 3 cut(s) 29, 44, 157
SetI ASST 2 cut(s) 74, 98
SinI GGWCC 1 cut(s) 96
SsiI CCGC 1 cut(s) 130
StyD4I CCNGG 3 cut(s) 27, 42, 155
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 66
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 161
Tth111I GACNNNGTC 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.