Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Forward (+)

1059548 .. 1062337

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G001280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGATCACGGCGTTGCTGGTCCTCAAGTGCAACCCGGAAGGATCCGACCCGGTCATATTGGCCAACGCCTCCGATACCTCCCATTTCGGCTACTTCCAGAGGTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGCCGCACCGTCGCCAAACGCACCCCTCCCGGTCAACGCCAGTCCGTCAAGCACGAAGAGTATAAAGTACATGCTTACAGCAGCAATGGACTCTGTGCATTGGGCTTTATGGATGATCACTATCCGGTTAGAAGTGCGTTTTCGCTGCTGAACCAGGTGTTAGATGAATATCAGAAAAAATTTGGTGATTCTTGGAGGACTGCACAACAGGACAGCACAGAATCGTGGCCCTACCTAAATGAGGCTCTAACAAGATTCCAGGACCCTGCAGAAGCTGATAAGTTGTTGAAAATTCAGAGGGAATTGGATGAAACAAAGATTATTCTTCATAAGACTATTGATAGTGTGCTTGAACGAGGTGAGAAACTGGACAGTTTGGTTGAGAAGAGTTCGGATCTTAGCACGGCATCACAGATGTTCTATAAGCAGGCAAAAAAGACCAATTCTTGTTGTACCATACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

199

Amino Acids

22.58

Weight (kDa)

6.96

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	47 - 112	2.2e-15	Regulated-SNARE-like domain
Synaptobrevin	PF00957	140 - 193	2.1e-14	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	3 cut(s)	39, 52, 537
AcoI	YGGCCR	2 cut(s)	63, 136
AcsI	RAATTY	2 cut(s)	314, 426
AfaI	GTAC	2 cut(s)	204, 589
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	424, 488
AjnI	CCWGG	2 cut(s)	288, 393
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
AlwI	GGATC	3 cut(s)	39, 52, 537
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	63, 136, 362
ApeKI	GCWGC	2 cut(s)	216, 280
ApoI	RAATTY	2 cut(s)	314, 426
AspS9I	GGNCC	4 cut(s)	22, 105, 363, 397
AsuC2I	CCSGG	3 cut(s)	38, 53, 165
AsuHPI	GGTGA	2 cut(s)	332, 506
AvaII	GGWCC	3 cut(s)	22, 105, 397
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	228, 267
BceAI	ACGGC	2 cut(s)	27, 555
BciT130I	CCWGG	2 cut(s)	290, 395
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	3 cut(s)	38, 53, 165
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	3 cut(s)	139, 217, 281
BlsI	GCNGC	3 cut(s)	140, 218, 282
Bme1390I	CCNGG	5 cut(s)	38, 53, 165, 290, 395
Bme18I	GGWCC	3 cut(s)	22, 105, 397
BmgT120I	GGNCC	4 cut(s)	22, 105, 363, 397
BmiI	GGNNCC	2 cut(s)	46, 399
BmrFI	CCNGG	5 cut(s)	38, 53, 165, 290, 395
BmsI	GCATC	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	3 cut(s)	38, 53, 165
BsaBI	GATNNNNATC	2 cut(s)	255, 303
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	2 cut(s)	175, 507
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	2 cut(s)	255, 303
BseBI	CCWGG	2 cut(s)	290, 395
BseGI	GGATG	2 cut(s)	253, 448
BseJI	GATNNNNATC	2 cut(s)	255, 303
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	175, 507
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	228, 267
BsgI	GTGCAG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	65, 138, 364
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	4 cut(s)	38, 53, 165, 260
BslI	CCNNNNNNNGG	1 cut(s)	376
BsnI	GGCC	3 cut(s)	65, 138, 364
Bsp143I	GATC	4 cut(s)	6, 44, 250, 529
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	3 cut(s)	65, 138, 364
BspLI	GGNNCC	2 cut(s)	46, 399
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	3 cut(s)	39, 52, 537
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	175, 507
BssMI	GATC	4 cut(s)	6, 44, 250, 529
Bst2UI	CCWGG	2 cut(s)	290, 395
Bst4CI	ACNGT	3 cut(s)	145, 509, 597
Bst6I	CTCTTC	2 cut(s)	186, 515
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	1 cut(s)	533
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	253, 448
BstKTI	GATC	4 cut(s)	9, 47, 253, 532
BstMBI	GATC	4 cut(s)	6, 44, 250, 529
BstMCI	CGRYCG	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	290, 395
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	5 cut(s)	36, 51, 163, 288, 393
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	228, 267
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	44, 529
BstYI	RGATCY	2 cut(s)	44, 529
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	65, 138, 364
BtsCI	GGATG	2 cut(s)	253, 448
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	4 cut(s)	22, 105, 363, 397
CseI	GACGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	203, 588
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	7 cut(s)	65, 93, 138, 240, 364, 380, 410
CviKI_1	RGCY	7 cut(s)	65, 93, 138, 240, 364, 380, 410
CviQI	GTAC	2 cut(s)	203, 588
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	4 cut(s)	8, 46, 252, 531
DpnII	GATC	4 cut(s)	6, 44, 250, 529
EaeI	YGGCCR	2 cut(s)	63, 136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	186, 515
EarI	CTCTTC	2 cut(s)	186, 515
EclXI	CGGCCG	1 cut(s)	136
Eco47I	GGWCC	3 cut(s)	22, 105, 397
Eco52I	CGGCCG	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	288, 393
FaeI	CATG	1 cut(s)	209
FaiI	YATR	7 cut(s)	59, 198, 207, 245, 465, 558, 593
FatI	CATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	139, 217, 281
FokI	GGATG	2 cut(s)	260, 455
Fsp4HI	GCNGC	3 cut(s)	139, 217, 281
GluI	GCNGC	3 cut(s)	139, 217, 281
HaeIII	GGCC	3 cut(s)	65, 138, 364
HapII	CCGG	4 cut(s)	38, 53, 165, 260
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	4 cut(s)	225, 323, 356, 390
HpaII	CCGG	4 cut(s)	38, 53, 165, 260
HphI	GGTGA	2 cut(s)	332, 506
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	5 cut(s)	49, 76, 309, 432, 529
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	170
Hpy99I	CGWCG	2 cut(s)	137, 149
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	3 cut(s)	145, 509, 597
HpyCH4V	TGCA	4 cut(s)	33, 233, 338, 404
HpyF3I	CTNAG	1 cut(s)	533
Hsp92II	CATG	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	6, 44, 250, 529
Lsp1109I	GCAGC	2 cut(s)	228, 267
LweI	GCATC	1 cut(s)	551
MabI	ACCWGGT	1 cut(s)	288
MalI	GATC	4 cut(s)	8, 46, 252, 531
MboI	GATC	4 cut(s)	6, 44, 250, 529
MboII	GAAGA	5 cut(s)	16, 121, 203, 452, 532
MflI	RGATCY	2 cut(s)	44, 529
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	4 cut(s)	314, 426, 437, 577
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	9 cut(s)	35, 82, 91, 96, 171, 324, 370, 426, 485
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	4 cut(s)	38, 53, 165, 260
MspR9I	CCNGG	5 cut(s)	38, 53, 165, 290, 395
MvaI	CCWGG	2 cut(s)	290, 395
NciI	CCSGG	3 cut(s)	38, 53, 165
NdeII	GATC	4 cut(s)	6, 44, 250, 529
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	46, 399
NspI	RCATGY	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	323, 356, 390
PflFI	GACNNNGTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	140, 218, 282
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	288, 393
PspGI	CCWGG	2 cut(s)	288, 393
PspN4I	GGNNCC	2 cut(s)	46, 399
PspPI	GGNCC	4 cut(s)	22, 105, 363, 397
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	44, 529
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	204, 589
RsaNI	GTAC	2 cut(s)	203, 588
SatI	GCNGC	3 cut(s)	139, 217, 281
Sau3AI	GATC	4 cut(s)	6, 44, 250, 529
Sau96I	GGNCC	4 cut(s)	22, 105, 363, 397
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	5 cut(s)	38, 53, 165, 290, 395
SetI	ASST	6 cut(s)	83, 107, 294, 372, 412, 496
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	3 cut(s)	22, 105, 397
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	314, 426, 437, 577
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	5 cut(s)	36, 51, 163, 288, 393
TaaI	ACNGT	3 cut(s)	145, 509, 597
TasI	AATT	4 cut(s)	314, 426, 437, 577
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	323, 356, 390
TseI	GCWGC	2 cut(s)	216, 280
TspDTI	ATGAA	5 cut(s)	17, 112, 315, 452, 459
TspGWI	ACGGA	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	3 cut(s)	22, 105, 397
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	2 cut(s)	314, 426
XceI	RCATGY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.