Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Reverse (-)

41072623 .. 41080877

Gene Structure 8255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCTTGCTGGTCATCAAGTGCAACCCGGAAGGATCCAACCCGGTCATATTGGCCAACGCCTTCGATACTTCCCACTTCGGCTACTTCCAGAGGTCCAGCGTCAGGAGTTCATCGTCTTCGTCGGCCGCACAGTTACCAAACACACCCCTCCCCGGTCAACGCCAGTCCGTCAAGCCCGAATGTTTGTCGGAGGCCAAATGGAGATTGATGATAGGAATGGATATCTTAGAACTTATGGCTTATACCCAGGTCACATATAGACCTATATATATAGCTGAGGAAGTGTTCACCCCGATTACCGAATCTACCTACAGTGTCTTTTCAGTGCACTTGAACCAAGTTCACTTCATCGTGCCGTGTATCCAGTCCTCACCTCATATTCTACTCCCGATAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

133

Amino Acids

14.81

Weight (kDa)

6.39

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	2 cut(s)	30, 43
AcoI	YGGCCR	2 cut(s)	54, 126
AfiI	CCNNNNNNNGG	2 cut(s)	105, 155
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	1 cut(s)	333
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	30, 43
AoxI	GGCC	4 cut(s)	3, 54, 126, 195
ApaLI	GTGCAC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	3 cut(s)	29, 44, 156
AsuHPI	GGTGA	2 cut(s)	283, 366
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	279
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	3 cut(s)	29, 44, 156
BfaI	CTAG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	4 cut(s)	29, 44, 156, 251
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	4 cut(s)	29, 44, 156, 251
BpiI	GAAGAC	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	279
BpuMI	CCSGG	3 cut(s)	29, 44, 156
BsaJI	CCNNGG	2 cut(s)	154, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 155
Bse1I	ACTGG	2 cut(s)	166, 367
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	154, 249
BseLI	CCNNNNNNNGG	2 cut(s)	105, 155
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	166, 367
BseSI	GKGCMC	1 cut(s)	333
BseX3I	CGGCCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	5, 56, 128, 197
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	29, 44, 156
BslI	CCNNNNNNNGG	2 cut(s)	105, 155
BsnI	GGCC	4 cut(s)	5, 56, 128, 197
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	4 cut(s)	5, 56, 128, 197
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	30, 43
BsrI	ACTGG	2 cut(s)	166, 367
BssECI	CCNNGG	2 cut(s)	154, 249
BssMI	GATC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	135, 317
BstDEI	CTNAG	2 cut(s)	229, 279
BstKTI	GATC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	35
BstMCI	CGRYCG	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	27, 42, 154, 249
BstSFI	CTRYAG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BstZI	CGGCCG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	5, 56, 128, 197
BtsIMutI	CAGTG	2 cut(s)	322, 333
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	1 cut(s)	91
CviJI	RGCY	8 cut(s)	5, 56, 84, 128, 178, 197, 242, 278
CviKI_1	RGCY	8 cut(s)	5, 56, 84, 128, 178, 197, 242, 278
DdeI	CTNAG	2 cut(s)	229, 279
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
EaeI	YGGCCR	2 cut(s)	54, 126
EagI	CGGCCG	1 cut(s)	126
EclXI	CGGCCG	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	5, 56, 128, 197
HapII	CCGG	3 cut(s)	29, 44, 156
HgaI	GACGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	3 cut(s)	29, 44, 156
HphI	GGTGA	2 cut(s)	283, 366
Hpy166II	GTNNAC	4 cut(s)	161, 291, 331, 346
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	3 cut(s)	91, 106, 391
Hpy8I	GTNNAC	4 cut(s)	161, 291, 331, 346
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	26, 73
HpyCH4III	ACNGT	2 cut(s)	135, 317
HpyCH4V	TGCA	2 cut(s)	24, 331
HpyF3I	CTNAG	2 cut(s)	229, 279
Kzo9I	GATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	135, 253
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	1 cut(s)	111
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	63, 171
MnlI	CCTC	6 cut(s)	87, 161, 187, 274, 382, 387
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	3 cut(s)	29, 44, 156
MspR9I	CCNGG	4 cut(s)	29, 44, 156, 251
MvaI	CCWGG	1 cut(s)	251
NciI	CCSGG	3 cut(s)	29, 44, 156
NdeII	GATC	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	35
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	96
ScrFI	CCNGG	4 cut(s)	29, 44, 156, 251
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	6 cut(s)	98, 255, 268, 280, 314, 379
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	96
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	400
StyD4I	CCNGG	4 cut(s)	27, 42, 154, 249
TaaI	ACNGT	2 cut(s)	135, 317
TaqI	TCGA	1 cut(s)	66
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	2 cut(s)	322, 333
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	102, 340
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	322, 333
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	96
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.