Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Forward (+)

23543652 .. 23545760

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACACGCGAACCCGTTATCCTGGCCAACGTTTCCGACCTCTCACAATTCGGAAAATTCTCTTTTTATCGCTCTAACTTCGAAGAGTTCATTGTATTCATTGCCCGTACTGTTGCCAGAAGAACCCCTCCAGGTCAGCGCCAATCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGCGCCGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCAATCAGGTATTAGATGTATACCAGAAGGATTATGGTGACACATGGAGGTTTGAAAACTCTAGTCAGCCGTGGCCATACTTAAAAGAAGCTTCAGACAAATTTCGGGACCCGGCAGAAGCTGATAAGCTGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTCATAAAACCATTGATGGTGTCCTAGCCCGAGGTGAAAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGAGTTAAGCCTGGCATCGAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTACACTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

199

Amino Acids

22.91

Weight (kDa)

8.26

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	48 - 111	7e-13	Regulated-SNARE-like domain
Synaptobrevin	PF00957	140 - 193	1.5e-12	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	48
AclI	AACGTT	1 cut(s)	69
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	2 cut(s)	63, 362
AcsI	RAATTY	2 cut(s)	95, 389
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	148, 589
AgsI	TTSAA	2 cut(s)	344, 424
AjnI	CCWGG	3 cut(s)	60, 169, 537
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	6 cut(s)	380, 410, 418, 502, 510, 525
AluI	AGCT	6 cut(s)	380, 410, 418, 502, 510, 525
Alw21I	GWGCWC	2 cut(s)	213, 527
Alw26I	GTCTC	1 cut(s)	440
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	3 cut(s)	63, 229, 362
ApaLI	GTGCAC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	95, 389
AspLEI	GCGC	2 cut(s)	180, 239
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	338, 506
AsuII	TTCGAA	2 cut(s)	120, 271
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	2 cut(s)	65, 364
BanII	GRGCYC	1 cut(s)	527
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
Bbv12I	GWGCWC	2 cut(s)	213, 527
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	2 cut(s)	224, 343
BciT130I	CCWGG	3 cut(s)	62, 171, 539
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	2 cut(s)	351, 485
BfoI	RGCGCY	1 cut(s)	181
Bme1390I	CCNGG	4 cut(s)	62, 171, 401, 539
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	398, 399
BmrFI	CCNGG	4 cut(s)	62, 171, 401, 539
BmsI	GCATC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	2 cut(s)	120, 271
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	359, 490
Bse3DI	GCAATG	1 cut(s)	138
BseBI	CCWGG	3 cut(s)	62, 171, 539
BseDI	CCNNGG	2 cut(s)	359, 490
BseGI	GGATG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	540
BseSI	GKGCMC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	65, 231, 364
BsiHKAI	GWGCWC	2 cut(s)	213, 527
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	65, 231, 364
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	489
Bsp119I	TTCGAA	2 cut(s)	120, 271
Bsp1286I	GDGCHC	2 cut(s)	213, 527
Bsp1407I	TGTACA	1 cut(s)	587
Bsp143I	GATC	2 cut(s)	6, 34
BspANI	GGCC	3 cut(s)	65, 231, 364
BspCNI	CTCAG	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	398, 399
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	515
BspT104I	TTCGAA	2 cut(s)	120, 271
BspTNI	GGTCTC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	359, 490
BssMI	GATC	2 cut(s)	6, 34
BssNAI	GTATAC	1 cut(s)	310
Bst1107I	GTATAC	1 cut(s)	310
Bst2UI	CCWGG	3 cut(s)	62, 171, 539
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	4 cut(s)	117, 192, 291, 515
BstAUI	TGTACA	1 cut(s)	587
BstBI	TTCGAA	2 cut(s)	120, 271
BstC8I	GCNNGC	2 cut(s)	213, 564
BstDEI	CTNAG	2 cut(s)	511, 526
BstDSI	CCRYGG	1 cut(s)	359
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	180, 239
BstKTI	GATC	2 cut(s)	9, 37
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	6, 34
BstNI	CCWGG	3 cut(s)	62, 171, 539
BstSCI	CCNGG	4 cut(s)	60, 169, 399, 537
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	48
BstZ17I	GTATAC	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	65, 231, 364
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	2 cut(s)	213, 564
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	2 cut(s)	180, 239
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	147, 588
CviAII	CATG	3 cut(s)	250, 333, 582
CviQI	GTAC	2 cut(s)	147, 588
DdeI	CTNAG	2 cut(s)	511, 526
DpnI	GATC	2 cut(s)	8, 36
DpnII	GATC	2 cut(s)	6, 34
EaeI	YGGCCR	2 cut(s)	63, 362
Eam1104I	CTCTTC	4 cut(s)	117, 192, 291, 515
EarI	CTCTTC	4 cut(s)	117, 192, 291, 515
Ecl136II	GAGCTC	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	3 cut(s)	60, 169, 537
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	3 cut(s)	253, 336, 585
FaiI	YATR	9 cut(s)	204, 224, 251, 310, 324, 334, 367, 465, 583
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	249, 332, 581
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	527
FspBI	CTAG	2 cut(s)	351, 485
GlaI	GCGC	2 cut(s)	179, 238
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	65, 231, 364
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	2 cut(s)	180, 239
Hin1II	CATG	3 cut(s)	253, 336, 585
Hin6I	GCGC	2 cut(s)	178, 237
HinP1I	GCGC	2 cut(s)	178, 237
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	338, 506
Hpy166II	GTNNAC	3 cut(s)	211, 310, 590
Hpy188I	TCNGA	4 cut(s)	76, 92, 385, 529
Hpy188III	TCNNGA	3 cut(s)	38, 395, 430
Hpy8I	GTNNAC	3 cut(s)	211, 310, 590
HpyAV	CCTTC	2 cut(s)	310, 470
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	211
HpyF3I	CTNAG	2 cut(s)	511, 526
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	253, 336, 585
HspAI	GCGC	2 cut(s)	178, 237
KflI	GGGWCCC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	6, 34
LguI	GCTCTTC	1 cut(s)	515
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	351, 485
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	8, 36
MboI	GATC	2 cut(s)	6, 34
MboII	GAAGA	8 cut(s)	16, 134, 171, 209, 278, 532, 559, 580
MhlI	GDGCHC	2 cut(s)	213, 527
MlsI	TGGCCA	2 cut(s)	65, 364
MluCI	AATT	4 cut(s)	86, 95, 389, 437
MluNI	TGGCCA	2 cut(s)	65, 364
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	89, 177, 242, 330, 426, 485
Mox20I	TGGCCA	2 cut(s)	65, 364
MscI	TGGCCA	2 cut(s)	65, 364
MseI	TTAA	2 cut(s)	371, 533
Msp20I	TGGCCA	2 cut(s)	65, 364
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	4 cut(s)	62, 171, 401, 539
MvaI	CCWGG	3 cut(s)	62, 171, 539
MvnI	CGCG	1 cut(s)	48
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	6, 34
NlaIII	CATG	3 cut(s)	253, 336, 585
NlaIV	GGNNCC	2 cut(s)	398, 399
NmuCI	GTSAC	1 cut(s)	326
NspV	TTCGAA	2 cut(s)	120, 271
PciSI	GCTCTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	527
Psp1406I	AACGTT	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	3 cut(s)	60, 169, 537
PspGI	CCWGG	3 cut(s)	60, 169, 537
PspN4I	GGNNCC	2 cut(s)	398, 399
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	148, 589
RsaNI	GTAC	2 cut(s)	147, 588
SacI	GAGCTC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	371, 533
Sau3AI	GATC	2 cut(s)	6, 34
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	4 cut(s)	62, 171, 401, 539
SduI	GDGCHC	2 cut(s)	213, 527
SfaNI	GCATC	1 cut(s)	551
SfuI	TTCGAA	2 cut(s)	120, 271
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	86, 95, 389, 437
SspMI	CTAG	2 cut(s)	351, 485
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	4 cut(s)	60, 169, 399, 537
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	3 cut(s)	120, 271, 545
TasI	AATT	4 cut(s)	86, 95, 389, 437
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	371, 533
Tru9I	TTAA	2 cut(s)	371, 533
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	17, 118, 127, 238, 452
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	16
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	2 cut(s)	95, 389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	2 cut(s)	351, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.