Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011619.1

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 603

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 295 bp

atgaagatcacggcgttgctggtcctcaagtgcaacccggaaggatccgacccggtcatattggccaacgcctccgatacctcccatttcggctacttccagaggtccagcgtcaaggagttcatcgtcttcgtcggccgcaccgtcgccaaacgcacccctcccggtcaacgccagtccgtcaagcacgaagagtataaagtacatgcttacaacagcaatggactctgtgcattgggctttatggatgatcactatccggttagaagtgcgttttcgctgctgaaccaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

9.03

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	39, 52
AcoI	YGGCCR	2 cut(s)	63, 136
AfaI	GTAC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	288
AlwI	GGATC	2 cut(s)	39, 52
AoxI	GGCC	2 cut(s)	63, 136
ApeKI	GCWGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	22, 105
AsuC2I	CCSGG	3 cut(s)	38, 53, 165
AvaII	GGWCC	2 cut(s)	22, 105
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	3 cut(s)	38, 53, 165
BisI	GCNGC	2 cut(s)	139, 281
BlsI	GCNGC	2 cut(s)	140, 282
Bme1390I	CCNGG	4 cut(s)	38, 53, 165, 290
Bme18I	GGWCC	2 cut(s)	22, 105
BmgT120I	GGNCC	2 cut(s)	22, 105
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	4 cut(s)	38, 53, 165, 290
BpiI	GAAGAC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	3 cut(s)	38, 53, 165
BsaBI	GATNNNNATC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	65, 138
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	4 cut(s)	38, 53, 165, 260
BsnI	GGCC	2 cut(s)	65, 138
Bsp143I	GATC	3 cut(s)	6, 44, 250
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	65, 138
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	39, 52
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	6, 44, 250
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	9, 47, 253
BstMBI	GATC	3 cut(s)	6, 44, 250
BstMCI	CGRYCG	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	4 cut(s)	36, 51, 163, 288
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	65, 138
BtsCI	GGATG	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	22, 105
CseI	GACGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	4 cut(s)	65, 93, 138, 240
CviKI_1	RGCY	4 cut(s)	65, 93, 138, 240
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	3 cut(s)	8, 46, 252
DpnII	GATC	3 cut(s)	6, 44, 250
EaeI	YGGCCR	2 cut(s)	63, 136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	22, 105
Eco52I	CGGCCG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	209
FaiI	YATR	4 cut(s)	59, 198, 207, 245
FatI	CATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	139, 281
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	139, 281
GluI	GCNGC	2 cut(s)	139, 281
HaeIII	GGCC	2 cut(s)	65, 138
HapII	CCGG	4 cut(s)	38, 53, 165, 260
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	4 cut(s)	38, 53, 165, 260
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	49, 76
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	170
Hpy99I	CGWCG	2 cut(s)	137, 149
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	33, 233
Hsp92II	CATG	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	6, 44, 250
LpnPI	CCDG	9 cut(s)	5, 51, 66, 113, 121, 178, 188, 273, 275
Lsp1109I	GCAGC	1 cut(s)	267
MabI	ACCWGGT	1 cut(s)	288
MalI	GATC	3 cut(s)	8, 46, 252
MboI	GATC	3 cut(s)	6, 44, 250
MboII	GAAGA	3 cut(s)	16, 121, 203
MflI	RGATCY	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	35, 82, 91, 96, 171
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	4 cut(s)	38, 53, 165, 260
MspR9I	CCNGG	4 cut(s)	38, 53, 165, 290
MvaI	CCWGG	1 cut(s)	290
NciI	CCSGG	3 cut(s)	38, 53, 165
NdeII	GATC	3 cut(s)	6, 44, 250
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	140, 282
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	22, 105
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SatI	GCNGC	2 cut(s)	139, 281
Sau3AI	GATC	3 cut(s)	6, 44, 250
Sau96I	GGNCC	2 cut(s)	22, 105
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	4 cut(s)	38, 53, 165, 290
SetI	ASST	3 cut(s)	83, 107, 294
SexAI	ACCWGGT	1 cut(s)	288
SinI	GGWCC	2 cut(s)	22, 105
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	4 cut(s)	36, 51, 163, 288
TaaI	ACNGT	1 cut(s)	145
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	17, 112
TspGWI	ACGGA	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	22, 105
XceI	RCATGY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.