Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Reverse (-)

21629829 .. 21632982

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G259700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGATCACGGCCTTGCTGGTCCTCAAGTGCAACCCGGACGAATCCGACCCGATCATTCTGGCCAACGCCTCCGATACCAGTCACTTCGGCTACTTCCAGAGGTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGTCGCACCGTTGCCAAACGGACCCCATCCGGACAACGTCAGTCCGTCAAGCATGAAGAGTATAAGGTGCATGCTTACAACAGCAATGGTCTTTGTGCGCTGGGCTTCATGGATGACCACTATCCTGTCCGAAGTGCATTTTCTTTGCTCAACCAGGTGCTAGATGAATATCAGAAAAAATTTGGTGATTCTTGGAGGACTGCACAACAGGACAGCACACAAACATGGCCCTATTTGGGTGAGGCCCTGACCAAGTTCCAGGACCCTGCAGAGGCTGATAAGTTGTTGAAAATTCAGAGGGAATTAGATGAAACAAAAATTATCCTTCATAAGACCATTGATAGTGTGCTTGCACGAGGTGAGAGACTTGACAGTTTAGTTGAGAAGAGTTCAGATCTTAGTGCAGCATCGCAGATGTTCTACAAGCAGGCAAAACAGGCCAATCAGTGTTGTACCATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

200

Amino Acids

22.54

Weight (kDa)

6.96

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	314, 426
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	2 cut(s)	371, 406
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	288, 393
Alw26I	GTCTC	1 cut(s)	493
AlwNI	CAGNNNCTG	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	5 cut(s)	12, 63, 362, 378, 573
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	2 cut(s)	314, 426
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	6 cut(s)	22, 105, 156, 363, 379, 397
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	332, 386, 506
AvaII	GGWCC	4 cut(s)	22, 105, 156, 397
BalI	TGGCCA	1 cut(s)	65
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	290, 395
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	3 cut(s)	38, 290, 395
Bme18I	GGWCC	4 cut(s)	22, 105, 156, 397
BmgT120I	GGNCC	6 cut(s)	22, 105, 156, 363, 379, 397
BmiI	GGNNCC	2 cut(s)	158, 399
BmrFI	CCNGG	3 cut(s)	38, 290, 395
BmsI	GCATC	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 406
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	290, 395
BseGI	GGATG	2 cut(s)	161, 253
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	371, 406
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	551
BseYI	CCCAGC	1 cut(s)	235
BsgI	GTGCAG	2 cut(s)	321, 558
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	5 cut(s)	14, 65, 364, 380, 575
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	38, 165
BslI	CCNNNNNNNGG	2 cut(s)	371, 406
BsmAI	GTCTC	1 cut(s)	493
BsnI	GGCC	5 cut(s)	14, 65, 364, 380, 575
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	6, 54, 529
BspANI	GGCC	5 cut(s)	14, 65, 364, 380, 575
BspEI	TCCGGA	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	158, 399
BspMAI	CTGCAG	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	81
BssMI	GATC	3 cut(s)	6, 54, 529
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	290, 395
Bst4CI	ACNGT	2 cut(s)	145, 509
Bst6I	CTCTTC	2 cut(s)	186, 515
BstC8I	GCNNGC	3 cut(s)	207, 486, 564
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	161, 253
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	9, 57, 532
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	3 cut(s)	6, 54, 529
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	2 cut(s)	290, 395
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	36, 288, 393
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	551
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	14, 65, 364, 380, 575
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	161, 253
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	3 cut(s)	207, 486, 564
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	6 cut(s)	22, 105, 156, 363, 379, 397
CseI	GACGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	4 cut(s)	188, 206, 244, 360
CviJI	RGCY	8 cut(s)	14, 65, 93, 240, 364, 380, 410, 575
CviKI_1	RGCY	8 cut(s)	14, 65, 93, 240, 364, 380, 410, 575
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	3 cut(s)	8, 56, 531
DpnII	GATC	3 cut(s)	6, 54, 529
DraIII	CACNNNGTG	1 cut(s)	494
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	186, 515
EarI	CTCTTC	2 cut(s)	186, 515
Eco47I	GGWCC	4 cut(s)	22, 105, 156, 397
EcoO109I	RGGNCCY	2 cut(s)	379, 397
EcoRII	CCWGG	2 cut(s)	288, 393
FaeI	CATG	4 cut(s)	191, 209, 247, 363
FaiI	YATR	7 cut(s)	189, 198, 207, 245, 361, 465, 593
FatI	CATG	4 cut(s)	187, 205, 243, 359
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	2 cut(s)	148, 260
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	540
GsaI	CCCAGC	1 cut(s)	239
HaeIII	GGCC	5 cut(s)	14, 65, 364, 380, 575
HapII	CCGG	2 cut(s)	38, 165
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	4 cut(s)	191, 209, 247, 363
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	2 cut(s)	44, 323
HpaII	CCGG	2 cut(s)	38, 165
HphI	GGTGA	3 cut(s)	332, 386, 506
Hpy188I	TCNGA	6 cut(s)	49, 76, 266, 309, 432, 529
Hpy188III	TCNNGA	2 cut(s)	100, 165
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	2 cut(s)	145, 509
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	7 cut(s)	33, 205, 272, 338, 404, 488, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	4 cut(s)	191, 209, 247, 363
HspAI	GCGC	1 cut(s)	233
Kpn2I	TCCGGA	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	6, 54, 529
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	1 cut(s)	551
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	3 cut(s)	8, 56, 531
MboI	GATC	3 cut(s)	6, 54, 529
MboII	GAAGA	4 cut(s)	16, 121, 203, 532
MflI	RGATCY	1 cut(s)	529
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	4 cut(s)	314, 426, 437, 453
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	8 cut(s)	35, 82, 96, 324, 370, 400, 426, 485
Mox20I	TGGCCA	1 cut(s)	65
MroI	TCCGGA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	358
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	38, 165
MspR9I	CCNGG	3 cut(s)	38, 290, 395
MvaI	CCWGG	2 cut(s)	290, 395
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	6, 54, 529
NlaIII	CATG	4 cut(s)	191, 209, 247, 363
NlaIV	GGNNCC	2 cut(s)	158, 399
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	44, 323
PflFI	GACNNNGTC	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	288, 393
PspFI	CCCAGC	1 cut(s)	235
PspGI	CCWGG	2 cut(s)	288, 393
PspN4I	GGNNCC	2 cut(s)	158, 399
PspPI	GGNCC	6 cut(s)	22, 105, 156, 363, 379, 397
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	171
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	358
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	3 cut(s)	6, 54, 529
Sau96I	GGNCC	6 cut(s)	22, 105, 156, 363, 379, 397
ScrFI	CCNGG	3 cut(s)	38, 290, 395
SetI	ASST	5 cut(s)	107, 175, 204, 294, 496
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	4 cut(s)	22, 105, 156, 397
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	4 cut(s)	314, 426, 437, 453
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	36, 288, 393
TaaI	ACNGT	2 cut(s)	145, 509
TaiI	ACGT	1 cut(s)	175
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	314, 426, 437, 453
TfiI	GAWTC	2 cut(s)	44, 323
TscAI	CASTG	1 cut(s)	587
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	7 cut(s)	17, 112, 204, 232, 315, 452, 459
TspGWI	ACGGA	2 cut(s)	169, 169
TspRI	CASTG	1 cut(s)	587
Tth111I	GACNNNGTC	1 cut(s)	171
VpaK11BI	GGWCC	4 cut(s)	22, 105, 156, 397
XapI	RAATTY	2 cut(s)	314, 426
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.