Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012115.1

Orthogroup ID

OG0005638

Physical Location & Seq

Genomic Coordinates Reverse (-)

3490 .. 4443

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggccttgctggtcatcaagtgcaacccggaaggatccgacccggtcatattggccaacgccttcgatacctcccacttcggctacttccagaggtccagcgtcaaggagttcatcgtcttcatcggccgcacagttaccaaacacacccctccccggtcaccagcagtccgtcaagcccgaatggaccggtcgcgggattccggtcaccggtcttcggattccggtcaagatcaccgaattccggtcactgttcgccggatttcagtcaccgatcgccggattccggtcactgttcgcctgattccggtcactggtcaccggtcgccagcgccctgccactggtcactggaggccggcaaggtggaggatgacttctctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

128

Amino Acids

14.33

Weight (kDa)

10.15

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58060 AT5G58060 AT5G58180 AT5G58180
fragaria_vesca	FvH4_1g01250
malus_domestica	MD02G1010400.v1.1 MD15G1155400.v1.1
prunus_persica	Prupe.7G259700_v2.0.a1
pyrus_communis	pycom02g00930 pycom15g13940
rosa_chinensis	RchiOBHm_Chr2g0086021 RchiOBHm_Chr5g0044951
rosa_laevigata	RLG00000015735 RLG00000019563
rosa_multiflora	Rmu_sc0009954.1_g000007 Rmu_sc0011619.1_g000001 Rmu_sc0012115.1_g000001 Rmu_sc0016521.1_g000001 Rmu_ssc0000355.1_g000022
rosa_roxburghii	Rroxscaffold_2G00154840
rosa_rugosa	Rorug01G0465200
rosa_samantha	Rh2AG014400 Rh2BG014900 Rh2CG015500 Rh2DG016800 Rh5BG308700 Rh5DG319100
rosa_wichuraiana	Rw2G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AciI	CCGC	2 cut(s)	130, 196
AclWI	GGATC	2 cut(s)	30, 43
AcoI	YGGCCR	2 cut(s)	54, 127
AcsI	RAATTY	1 cut(s)	240
AgeI	ACCGGT	3 cut(s)	189, 210, 321
AlwI	GGATC	2 cut(s)	30, 43
AoxI	GGCC	4 cut(s)	3, 54, 127, 354
ApoI	RAATTY	1 cut(s)	240
AsiGI	ACCGGT	3 cut(s)	189, 210, 321
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	96, 187
AsuC2I	CCSGG	3 cut(s)	29, 44, 157
AsuHPI	GGTGA	5 cut(s)	153, 200, 227, 262, 311
AvaII	GGWCC	2 cut(s)	96, 187
BalI	TGGCCA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	112, 207
BcnI	CCSGG	3 cut(s)	29, 44, 157
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	3 cut(s)	29, 44, 157
Bme18I	GGWCC	2 cut(s)	96, 187
BmgT120I	GGNCC	2 cut(s)	96, 187
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	3 cut(s)	29, 44, 157
BpiI	GAAGAC	2 cut(s)	112, 207
BpmI	CTGGAG	1 cut(s)	371
BpuMI	CCSGG	3 cut(s)	29, 44, 157
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	8 cut(s)	189, 203, 210, 224, 244, 286, 307, 321
Bse118I	RCCGGY	4 cut(s)	189, 210, 321, 356
Bse1I	ACTGG	3 cut(s)	319, 347, 354
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	376
BseNI	ACTGG	3 cut(s)	319, 347, 354
BseX3I	CGGCCG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	196
Bsh1285I	CGRYCG	4 cut(s)	130, 194, 277, 326
BshFI	GGCC	4 cut(s)	5, 56, 129, 356
BshTI	ACCGGT	3 cut(s)	189, 210, 321
BsiEI	CGRYCG	4 cut(s)	130, 194, 277, 326
BsnI	GGCC	4 cut(s)	5, 56, 129, 356
Bsp143I	GATC	3 cut(s)	35, 232, 274
BspACI	CCGC	2 cut(s)	130, 196
BspANI	GGCC	4 cut(s)	5, 56, 129, 356
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	30, 43
BsrFI	RCCGGY	4 cut(s)	189, 210, 321, 356
BsrI	ACTGG	3 cut(s)	319, 347, 354
BssAI	RCCGGY	4 cut(s)	189, 210, 321, 356
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	35, 232, 274
Bst4CI	ACNGT	3 cut(s)	136, 253, 295
BstC8I	GCNNGC	2 cut(s)	330, 358
BstEII	GGTNACC	3 cut(s)	159, 206, 317
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	38, 235, 277
BstMBI	GATC	3 cut(s)	35, 232, 274
BstMCI	CGRYCG	4 cut(s)	130, 194, 277, 326
BstPI	GGTNACC	3 cut(s)	159, 206, 317
BstSCI	CCNGG	3 cut(s)	27, 42, 155
BstUI	CGCG	1 cut(s)	196
BstV2I	GAAGAC	2 cut(s)	112, 207
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	5, 56, 129, 356
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	5 cut(s)	249, 291, 312, 340, 347
Cac8I	GCNNGC	2 cut(s)	330, 358
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	4 cut(s)	189, 210, 321, 356
Cfr13I	GGNCC	2 cut(s)	96, 187
CseI	GACGC	1 cut(s)	91
CspAI	ACCGGT	3 cut(s)	189, 210, 321
CviJI	RGCY	6 cut(s)	5, 56, 84, 129, 179, 356
CviKI_1	RGCY	6 cut(s)	5, 56, 84, 129, 179, 356
DpnI	GATC	3 cut(s)	37, 234, 276
DpnII	GATC	3 cut(s)	35, 232, 274
EaeI	YGGCCR	2 cut(s)	54, 127
EagI	CGGCCG	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	96, 187
Eco52I	CGGCCG	1 cut(s)	127
Eco91I	GGTNACC	3 cut(s)	159, 206, 317
EcoO65I	GGTNACC	3 cut(s)	159, 206, 317
EcoRI	GAATTC	1 cut(s)	240
FaiI	YATR	1 cut(s)	50
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	1 cut(s)	130
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	4 cut(s)	5, 56, 129, 356
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	4 cut(s)	200, 221, 283, 304
HphI	GGTGA	5 cut(s)	153, 200, 227, 262, 311
Hpy188I	TCNGA	2 cut(s)	40, 220
Hpy188III	TCNNGA	2 cut(s)	91, 230
HpyAV	CCTTC	2 cut(s)	26, 73
HpyCH4III	ACNGT	3 cut(s)	136, 253, 295
HpyCH4V	TGCA	1 cut(s)	24
HspAI	GCGC	1 cut(s)	332
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	35, 232, 274
MaeIII	GTNAC	9 cut(s)	136, 159, 206, 247, 268, 289, 310, 317, 345
MalI	GATC	3 cut(s)	37, 234, 276
MboI	GATC	3 cut(s)	35, 232, 274
MboII	GAAGA	2 cut(s)	112, 207
MflI	RGATCY	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	240
MluNI	TGGCCA	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	5 cut(s)	82, 87, 162, 346, 361
Mox20I	TGGCCA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	56
MspR9I	CCNGG	3 cut(s)	29, 44, 157
MvnI	CGCG	1 cut(s)	196
NaeI	GCCGGC	1 cut(s)	358
NciI	CCSGG	3 cut(s)	29, 44, 157
NdeII	GATC	3 cut(s)	35, 232, 274
NgoMIV	GCCGGC	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	8 cut(s)	159, 206, 247, 268, 289, 310, 317, 345
PdiI	GCCGGC	1 cut(s)	358
PfeI	GAWTC	4 cut(s)	200, 221, 283, 304
PflFI	GACNNNGTC	1 cut(s)	44
PinAI	ACCGGT	3 cut(s)	189, 210, 321
PkrI	GCNGC	1 cut(s)	131
Ple19I	CGATCG	1 cut(s)	277
PspEI	GGTNACC	3 cut(s)	159, 206, 317
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	96, 187
PsuI	RGATCY	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	44
PvuI	CGATCG	1 cut(s)	277
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	3 cut(s)	35, 232, 274
Sau96I	GGNCC	2 cut(s)	96, 187
ScrFI	CCNGG	3 cut(s)	29, 44, 157
SetI	ASST	3 cut(s)	74, 98, 366
SinI	GGWCC	2 cut(s)	96, 187
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	2 cut(s)	130, 196
StyD4I	CCNGG	3 cut(s)	27, 42, 155
TaaI	ACNGT	3 cut(s)	136, 253, 295
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	240
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	4 cut(s)	200, 221, 283, 304
TscAI	CASTG	5 cut(s)	256, 298, 319, 347, 354
TseFI	GTSAC	8 cut(s)	159, 206, 247, 268, 289, 310, 317, 345
Tsp45I	GTSAC	8 cut(s)	159, 206, 247, 268, 289, 310, 317, 345
TspDTI	ATGAA	2 cut(s)	103, 112
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	5 cut(s)	256, 298, 319, 347, 354
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	96, 187
XapI	RAATTY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.