AT5G58190

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005296
Physical Location & Seq
Forward (+)
23546329 .. 23549605
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58190.1

Sequence Viewer

Length: 1584 bp
ATGGATCCCGCTTCTTCTTCTTCCTCAAATCAGCGCAACCGAATCGTCTCTTCTGGGGAAAGACCAGTGATGGCTGATAATGGCGTCCAACAGGTTTCTCACGACGATGGAAGGAACATTGTTTCTTCGTCTTATAGTTCTTCCGTGGTTCCTTCTCCTGATCCCGCTCCTTATTATAACGTTCTTCAAACCCCTACCAATCTCTATCACTACGATTGGGATATCGCAAATTCTGGCTATGCACAAGGCATCAATACTTGGGATGGATATCCACGATATGCTACTACTACCCCTGAAGCCATGCATGTGCCACCGGTTGTCTACAATGACAATTCATCTCTTATGTACCAATATCCTGGTTATGGATTTAACCCTTATCCTTCTGTAATGTTGGAGGGACAAATTCCAGTCTCCCCAGCTTATTACCCACAACCTTTTGGTGCACCTTCTGCAATGCATTATTTACCCTCAGATATTGACCCAACATCTGCTGCTTATATGATTCCTTACGGGCAATATGGTGGAGGGAATTATTCCGGAAATCAAGGGGACATCTCTTTAACATCTCATATACCTTATCCTCAAACGATGGGTATACTTGGGCCATACGACCATAATGCTTCACAGGTAGCGTTGCATGGGAGCGGGGTTGCTTCAAGCTCTTCTTTGGGAGGTTATTATCATGTAGGATCTTACCAGAATCCTAGCTCTACCCCCTCATATTATGGAGTTGATAATCGAGTCAGATTAACCCCTGACATAGGTAAAAGACGAGAGAAGGATCAGGGCTCTATATCTAGCACCAGTGATCTGTATGGTAATCGAGGACCACGGGCATCAAGCAGGGTAAAGAGCAAGAACAGCTCCAAACCTTGCTCTACTATTGGTGATTCAGCAAGCGATTCAAGTACAGCTGGACCAAATCCCAGTTTGTACAACCATCCAGAATTTGTGACAGATTATAAGAATGCCAAATTCTTTATCGTCAAGTCATTTAGTGAAGACAATGTCCACAGAAGTATCAAGTACAATGTCTGGGCCAGTACACCGCATGGCAACAAAAAATTAGACACTGCTTATCGGGATGCTGAGAAGATGGGAGGAAAGTGTCCAATCTTTCTGTTCTTTTCGGTAAATGCTAGTGGACAATTCTGTGGGGTGTCAGAAATGGTTGGACCTGTAGATTTTGAAAAGGATGCTGGTTACTGGCAGCAAGACAGGTGGAGTGGGCAGTTCCCAGTGAAATGGCATATTGTGAAAGATATACCGAATAACCGATTTTGTCATATTCTTTTACAAAACAATGACAACAAGCCGGTAACGCACAGCCGAGATTCTCAGGAGGTGAAGCTACGCCAGGGGATTGAGATGCTTAGAATTTTCAAAGAATACGAGGCACACACATCAATCCTTGATGATTTCGGCTACTATGATGAGTTAGAGGGGCAAAAGGTGGGAGAAGATGGAACAAGGAAAAAAGCTGGGGAAGAAGAGACCTCCGTGGAGCAATTATCAGAGCGCCTTCAAGCTGTCAAAGTAGAAGATGGGAAGGAGGAGGAAAAAAAAGAGTTAATAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

527

Amino Acids

58.34

Weight (kDa)

5.55

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 324 - 462 1.3e-47 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 177, 963
AccBSI CCGCTC 2 cut(s) 167, 645
AccI GTMKAC 2 cut(s) 321, 595
AccIII TCCGGA 1 cut(s) 536
AciI CCGC 4 cut(s) 9, 165, 645, 1049
AclI AACGTT 1 cut(s) 180
AclWI GGATC 4 cut(s) 12, 155, 697, 789
AcsI RAATTY 5 cut(s) 229, 402, 947, 974, 1377
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 5 cut(s) 347, 910, 935, 1028, 1045
AfiI CCNNNNNNNGG 2 cut(s) 362, 761
AgeI ACCGGT 1 cut(s) 313
AgsI TTSAA 6 cut(s) 188, 657, 906, 1190, 1384, 1526
AjnI CCWGG 2 cut(s) 355, 1356
AluBI AGCT 9 cut(s) 419, 660, 708, 864, 914, 1351, 1481, 1529, 1577
AluI AGCT 9 cut(s) 419, 660, 708, 864, 914, 1351, 1481, 1529, 1577
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 52, 415, 1487
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 4 cut(s) 12, 155, 697, 789
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 2 cut(s) 602, 1038
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 491, 1210
ApoI RAATTY 5 cut(s) 229, 402, 947, 974, 1377
AsiGI ACCGGT 1 cut(s) 313
AspLEI GCGC 2 cut(s) 36, 1521
AspS9I GGNCC 5 cut(s) 602, 827, 917, 1038, 1175
AsuHPI GGTGA 2 cut(s) 899, 1357
AvaII GGWCC 3 cut(s) 827, 917, 1175
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 2 cut(s) 1003, 1036
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 1008
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 478, 1222
BccI CCATC 8 cut(s) 64, 101, 257, 583, 948, 1090, 1457, 1538
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 599, 633
BciT130I CCWGG 2 cut(s) 357, 1358
BcoDI GTCTC 3 cut(s) 52, 415, 1487
BfaI CTAG 3 cut(s) 705, 798, 1140
BfmI CTRYAG 1 cut(s) 1179
BfoI RGCGCY 1 cut(s) 1522
BisI GCNGC 2 cut(s) 492, 1211
BlsI GCNGC 2 cut(s) 493, 1212
Bme1390I CCNGG 2 cut(s) 357, 1358
Bme18I GGWCC 3 cut(s) 827, 917, 1175
BmgT120I GGNCC 5 cut(s) 602, 827, 917, 1038, 1175
BmiI GGNNCC 2 cut(s) 6, 150
BmrFI CCNGG 2 cut(s) 357, 1358
BmrI ACTGGG 2 cut(s) 921, 1232
BmsI GCATC 5 cut(s) 258, 845, 1075, 1186, 1359
BmuI ACTGGG 2 cut(s) 921, 1232
BpiI GAAGAC 1 cut(s) 1008
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 1487
BsaJI CCNNGG 4 cut(s) 144, 830, 1357, 1500
BsaWI WCCGGW 2 cut(s) 313, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 761
Bse118I RCCGGY 2 cut(s) 313, 1315
Bse1I ACTGG 7 cut(s) 65, 407, 804, 927, 1041, 1211, 1238
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 2 cut(s) 357, 1358
BseDI CCNNGG 4 cut(s) 144, 830, 1357, 1500
BseGI GGATG 4 cut(s) 268, 940, 1090, 1201
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 362, 761
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 3 cut(s) 483, 1080, 1352
BseNI ACTGG 7 cut(s) 65, 407, 804, 927, 1041, 1211, 1238
BseRI GAGGAG 1 cut(s) 1568
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 478, 1222
BseYI CCCAGC 2 cut(s) 415, 1481
BshFI GGCC 2 cut(s) 604, 1040
BshTI ACCGGT 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 3 cut(s) 314, 537, 1316
BslFI GGGAC 2 cut(s) 411, 563
BslI CCNNNNNNNGG 2 cut(s) 362, 761
BsmAI GTCTC 3 cut(s) 52, 415, 1487
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 411, 563
BsmI GAATGC 1 cut(s) 973
BsnI GGCC 2 cut(s) 604, 1040
Bso31I GGTCTC 1 cut(s) 1487
Bsp1286I GDGCHC 2 cut(s) 445, 791
Bsp13I TCCGGA 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 5 cut(s) 4, 160, 689, 781, 808
BspACI CCGC 4 cut(s) 9, 165, 645, 1049
BspANI GGCC 2 cut(s) 604, 1040
BspCNI CTCAG 3 cut(s) 482, 1081, 1351
BspEI TCCGGA 1 cut(s) 536
BspLI GGNNCC 2 cut(s) 6, 150
BspPI GGATC 4 cut(s) 12, 155, 697, 789
BspQI GCTCTTC 1 cut(s) 667
BspTNI GGTCTC 1 cut(s) 1487
BsrBI CCGCTC 2 cut(s) 167, 645
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 2 cut(s) 313, 1315
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 7 cut(s) 65, 407, 804, 927, 1041, 1211, 1238
BssAI RCCGGY 2 cut(s) 313, 1315
BssECI CCNNGG 4 cut(s) 144, 830, 1357, 1500
BssMI GATC 5 cut(s) 4, 160, 689, 781, 808
BssNAI GTATAC 1 cut(s) 596
BssNI GRCGYC 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 596
Bst2UI CCWGG 2 cut(s) 357, 1358
Bst6I CTCTTC 3 cut(s) 55, 667, 1485
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 449
BstAUI TGTACA 1 cut(s) 933
BstC8I GCNNGC 1 cut(s) 898
BstDEI CTNAG 4 cut(s) 469, 1089, 1338, 1373
BstDSI CCRYGG 3 cut(s) 144, 830, 1500
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 4 cut(s) 268, 940, 1090, 1201
BstH2I RGCGCY 1 cut(s) 1522
BstHHI GCGC 2 cut(s) 36, 1521
BstKTI GATC 5 cut(s) 7, 163, 692, 784, 811
BstMAI GTCTC 3 cut(s) 52, 415, 1487
BstMBI GATC 5 cut(s) 4, 160, 689, 781, 808
BstMWI GCNNNNNNNGC 3 cut(s) 449, 861, 1321
BstNI CCWGG 2 cut(s) 357, 1358
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 355, 1356
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 478, 1222
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 2 cut(s) 4, 689
BstXI CCANNNNNNTGG 2 cut(s) 356, 1245
BstYI RGATCY 2 cut(s) 4, 689
BstZ17I GTATAC 1 cut(s) 596
BsuRI GGCC 2 cut(s) 604, 1040
BtgI CCRYGG 3 cut(s) 144, 830, 1500
BtsCI GGATG 4 cut(s) 268, 940, 1090, 1201
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 4 cut(s) 72, 811, 1071, 1245
Cac8I GCNNGC 1 cut(s) 898
CfoI GCGC 2 cut(s) 36, 1521
Cfr10I RCCGGY 2 cut(s) 313, 1315
Cfr13I GGNCC 5 cut(s) 602, 827, 917, 1038, 1175
CseI GACGC 1 cut(s) 73
Csp6I GTAC 5 cut(s) 346, 909, 934, 1027, 1044
CspAI ACCGGT 1 cut(s) 313
CspCI CAANNNNNGTGG 2 cut(s) 1202, 1237
CviAII CATG 5 cut(s) 301, 305, 638, 683, 1052
CviQI GTAC 5 cut(s) 346, 909, 934, 1027, 1044
DdeI CTNAG 4 cut(s) 469, 1089, 1338, 1373
DpnI GATC 5 cut(s) 6, 162, 691, 783, 810
DpnII GATC 5 cut(s) 4, 160, 689, 781, 808
Eam1104I CTCTTC 3 cut(s) 55, 667, 1485
EarI CTCTTC 3 cut(s) 55, 667, 1485
Eco24I GRGCYC 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 1487
Eco32I GATATC 2 cut(s) 223, 269
Eco47I GGWCC 3 cut(s) 827, 917, 1175
Eco57I CTGAAG 1 cut(s) 315
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoRII CCWGG 2 cut(s) 355, 1356
EcoRV GATATC 2 cut(s) 223, 269
EcoT22I ATGCAT 2 cut(s) 306, 459
EcoT38I GRGCYC 1 cut(s) 791
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 5 cut(s) 304, 308, 641, 686, 1055
FalI AAGNNNNNCTT 2 cut(s) 649, 681
FaqI GGGAC 2 cut(s) 411, 563
FatI CATG 5 cut(s) 300, 304, 637, 682, 1051
FauI CCCGC 3 cut(s) 16, 172, 638
FblI GTMKAC 2 cut(s) 321, 595
Fnu4HI GCNGC 2 cut(s) 492, 1211
FokI GGATG 4 cut(s) 275, 927, 1097, 1208
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 2 cut(s) 492, 1211
FspBI CTAG 3 cut(s) 705, 798, 1140
GlaI GCGC 2 cut(s) 35, 1520
GluI GCNGC 2 cut(s) 492, 1211
GsaI CCCAGC 2 cut(s) 419, 1485
HaeII RGCGCY 1 cut(s) 1522
HaeIII GGCC 2 cut(s) 604, 1040
HapII CCGG 3 cut(s) 314, 537, 1316
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 36, 1521
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 5 cut(s) 304, 308, 641, 686, 1055
Hin6I GCGC 2 cut(s) 34, 1519
HinP1I GCGC 2 cut(s) 34, 1519
HinfI GANTC 7 cut(s) 42, 502, 700, 741, 890, 902, 1334
HpaII CCGG 3 cut(s) 314, 537, 1316
HphI GGTGA 2 cut(s) 899, 1357
Hpy166II GTNNAC 6 cut(s) 322, 443, 596, 1012, 1046, 1145
Hpy188I TCNGA 4 cut(s) 472, 746, 1165, 1516
Hpy188III TCNNGA 6 cut(s) 101, 158, 537, 944, 1082, 1340
Hpy8I GTNNAC 6 cut(s) 322, 443, 596, 1012, 1046, 1145
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 7 cut(s) 105, 162, 390, 456, 772, 1532, 1543
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 6 cut(s) 242, 304, 443, 452, 457, 637
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 861, 1321
HpyF3I CTNAG 4 cut(s) 469, 1089, 1338, 1373
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 5 cut(s) 304, 308, 641, 686, 1055
HspAI GCGC 2 cut(s) 34, 1519
Kpn2I TCCGGA 1 cut(s) 536
Kzo9I GATC 5 cut(s) 4, 160, 689, 781, 808
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 4 cut(s) 172, 642, 869, 1504
Lsp1109I GCAGC 2 cut(s) 478, 1222
LweI GCATC 5 cut(s) 258, 845, 1075, 1186, 1359
MaeI CTAG 3 cut(s) 705, 798, 1140
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 952, 1202, 1318
MalI GATC 5 cut(s) 6, 162, 691, 783, 810
MbiI CCGCTC 2 cut(s) 167, 645
MboI GATC 5 cut(s) 4, 160, 689, 781, 808
MflI RGATCY 2 cut(s) 4, 689
MhlI GDGCHC 2 cut(s) 445, 791
MlyI GAGTC 1 cut(s) 750
MmeI TCCRAC 3 cut(s) 112, 372, 1153
Mph1103I ATGCAT 2 cut(s) 306, 459
MroI TCCGGA 1 cut(s) 536
MseI TTAA 4 cut(s) 369, 560, 749, 1571
MslI CAYNNNNRTG 2 cut(s) 105, 305
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 3 cut(s) 314, 537, 1316
MspR9I CCNGG 2 cut(s) 357, 1358
Mva1269I GAATGC 1 cut(s) 973
MvaI CCWGG 2 cut(s) 357, 1358
MwoI GCNNNNNNNGC 3 cut(s) 449, 861, 1321
NdeII GATC 5 cut(s) 4, 160, 689, 781, 808
NlaIII CATG 5 cut(s) 304, 308, 641, 686, 1055
NlaIV GGNNCC 2 cut(s) 6, 150
NmeAIII GCCGAG 1 cut(s) 1355
NmuCI GTSAC 1 cut(s) 952
NsiI ATGCAT 2 cut(s) 306, 459
NspI RCATGY 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 667
PctI GAATGC 1 cut(s) 973
PfeI GAWTC 6 cut(s) 42, 502, 700, 890, 902, 1334
PflFI GACNNNGTC 1 cut(s) 1007
PinAI ACCGGT 1 cut(s) 313
PkrI GCNGC 2 cut(s) 493, 1212
PleI GAGTC 1 cut(s) 749
PpsI GAGTC 1 cut(s) 749
PsiI TTATAA 2 cut(s) 177, 963
Psp1406I AACGTT 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 355, 1356
PspFI CCCAGC 2 cut(s) 415, 1481
PspGI CCWGG 2 cut(s) 355, 1356
PspN4I GGNNCC 2 cut(s) 6, 150
PspPI GGNCC 5 cut(s) 602, 827, 917, 1038, 1175
PsuI RGATCY 2 cut(s) 4, 689
PsyI GACNNNGTC 1 cut(s) 1007
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 5 cut(s) 347, 910, 935, 1028, 1045
RsaNI GTAC 5 cut(s) 346, 909, 934, 1027, 1044
RseI CAYNNNNRTG 2 cut(s) 105, 305
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 4 cut(s) 369, 560, 749, 1571
SatI GCNGC 2 cut(s) 492, 1211
Sau3AI GATC 5 cut(s) 4, 160, 689, 781, 808
Sau96I GGNCC 5 cut(s) 602, 827, 917, 1038, 1175
SchI GAGTC 1 cut(s) 750
ScrFI CCNGG 2 cut(s) 357, 1358
SduI GDGCHC 2 cut(s) 445, 791
SfaNI GCATC 5 cut(s) 258, 845, 1075, 1186, 1359
SfcI CTRYAG 1 cut(s) 1179
SinI GGWCC 3 cut(s) 827, 917, 1175
SmiMI CAYNNNNRTG 2 cut(s) 105, 305
SsiI CCGC 4 cut(s) 9, 165, 645, 1049
SspMI CTAG 3 cut(s) 705, 798, 1140
StyD4I CCNGG 2 cut(s) 355, 1356
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 739, 823
TatI WGTACW 4 cut(s) 908, 933, 1026, 1043
TfiI GAWTC 6 cut(s) 42, 502, 700, 890, 902, 1334
Tru1I TTAA 4 cut(s) 369, 560, 749, 1571
Tru9I TTAA 4 cut(s) 369, 560, 749, 1571
TscAI CASTG 4 cut(s) 72, 811, 1078, 1245
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 2 cut(s) 491, 1210
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 2 cut(s) 133, 1489
TspRI CASTG 4 cut(s) 72, 811, 1078, 1245
Tth111I GACNNNGTC 1 cut(s) 1007
VneI GTGCAC 1 cut(s) 441
VpaK11BI GGWCC 3 cut(s) 827, 917, 1175
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 5 cut(s) 229, 402, 947, 974, 1377
XceI RCATGY 1 cut(s) 308
XmiI GTMKAC 2 cut(s) 321, 595
XspI CTAG 3 cut(s) 705, 798, 1140
Zsp2I ATGCAT 2 cut(s) 306, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.