Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005296

Physical Location & Seq

Genomic Coordinates Forward (+)

187951 .. 190430

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCATGGATATGGATTGGTTTCAAGTTCCTTTGGTGGACGCTATCCTCCTGGTAGTTCTTATCAGAGCTCAAACTCTGGTGGTGCTTCATATTCATTTGGTAATGACCAGAACCGACCAAATGTTGACAAGGCCAGAAGAAGAGAGAGGGACTGGGATTCAGTTTCCACTTATAATAATTCACATGATATCTTCAATGACCGCAATCACGGACCAAGGGCTTCGAAGATGAAGGGAAAGAGTACTTCCGACCAGAGTTCTTCATCTAGTGTTAGGAAAATGGATCTATCTGCTTCTGGAATTAACCTTGATTCATTGAACCGGCTAGATTTTGTCACAGAATATGAGGATGCAAAATTCTTTATCATTAAGTCTTTCAGTGAGGACAATGTTCACAAAAGTATTAAATACAATGTTTGGGCTAGCACGCCTCATGGAAACAAGAAACTTGATGCTGCTTATCATGAGGCAAAGAAAAAAGGCAGCTGTGCAGTCTTCCTATTCTTTTCGGTTAATGCTAGCGGACAGTTTTGTGGAGTAGCGGAAATGGTGGGACCTGTAGATTTTGAGAAGGATGCTGATTACTGGCAGCAAGATAGGTGGAGTGGGCAATTTCCGGTTCAGTGGCATATTGTAAAGGATGTTCCTAACATTCGGTTCCGTCACATTCTACTTGAAAATAATGATAATAAGCCTGTCACGCACAGTCGAGATTGTCAGGAGGTGAATCTCAAACAAGGTATTGAGCTGTTGAAAATTTTCAATGATTTTGATGCACGAACATCTATTATAGATGATTTTGAATTTTATGATGAGCGGGAAAAATCCTTGAAGGAAAGGAAAGTTAAACAAGAAGCTAGTTCAACTACAGATGCTTCTGATTCAGTTGCCGTTGATTCTGTTAATGAAATTTCCAATAGTTTTGATCAAGCCCTGGAGTTGAAAGGAAGTAGTAGCAAAGTAGTAGCAGAAACTGAACATGACATTAGCTCAAAAACAGATGCTGCGTCAGTTATACTTGAACATGTTTCCTCCGTGGACCAAATATCTGATAACTTATCTCAAGTATTGCGGTTGGAAGAGGGTGACAAAGAATTAGCTCTGTCATCTGAAAGTAGTAAAGGTGTAGACGACAGCAAGTCAATTGACAGGAAGGCAACAGTAGTATCAACTACTAGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

395

Amino Acids

43.9

Weight (kDa)

5.46

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58190 AT5G58190
fragaria_vesca	FvH4_4g00190 FvH4_4g00190 FvH4_4g00190 FvH4_4g00190
malus_domestica	MD04G1001900.v1.1 MD13G1285600.v1.1
prunus_persica	Prupe.1G002400_v2.0.a1
pyrus_communis	pycom04g00250 pycom420g00560
rosa_chinensis	RchiOBHm_Chr4g0384791 RchiOBHm_Chr4g0384881
rosa_laevigata	RLG00000010269
rosa_multiflora	Rmu_co8261087.1_g000001 Rmu_co8297957.1_g000001 Rmu_sc0003822.1_g000028 Rmu_ssc0000137.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332860
rosa_rugosa	Rorug03G0297600 Rorug03G0297700 Rorug03G0297800
rosa_samantha	Rh4AG001500 Rh4BG001300 Rh4CG001200 Rh4CG001800 Rh4DG001300
rosa_wichuraiana	Rw0G012840 Rw4G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	1128
AciI	CCGC	5 cut(s)	202, 522, 542, 817, 1072
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	4 cut(s)	356, 756, 803, 909
AfaI	GTAC	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	1024
AhdI	GACNNNNNGTC	1 cut(s)	1138
AhlI	ACTAGT	1 cut(s)	1175
AjnI	CCWGG	2 cut(s)	49, 933
AluBI	AGCT	6 cut(s)	69, 486, 748, 857, 990, 1100
AluI	AGCT	6 cut(s)	69, 486, 748, 857, 990, 1100
Alw21I	GWGCWC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	291
AlwNI	CAGNNNCTG	2 cut(s)	974, 1004
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	4 cut(s)	455, 483, 589, 1004
ApoI	RAATTY	4 cut(s)	356, 756, 803, 909
Asp700I	GAANNNNTTC	1 cut(s)	758
AspS9I	GGNCC	3 cut(s)	212, 554, 1039
AsuHPI	GGTGA	2 cut(s)	736, 1097
AsuII	TTCGAA	1 cut(s)	224
AsuNHI	GCTAGC	2 cut(s)	422, 518
AvaII	GGWCC	3 cut(s)	212, 554, 1039
BaeI	ACNNNNGTAYC	2 cut(s)	1149, 1182
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	442, 495, 601, 991
BceAI	ACGGC	1 cut(s)	875
BciT130I	CCWGG	2 cut(s)	51, 935
BclI	TGATCA	1 cut(s)	925
BcuI	ACTAGT	1 cut(s)	1175
BfaI	CTAG	6 cut(s)	267, 326, 423, 519, 858, 1176
BfmI	CTRYAG	2 cut(s)	558, 867
BisI	GCNGC	4 cut(s)	456, 484, 590, 1005
BlsI	GCNGC	4 cut(s)	457, 485, 591, 1006
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	51, 935
Bme18I	GGWCC	3 cut(s)	212, 554, 1039
BmeRI	GACNNNNNGTC	1 cut(s)	1138
BmgT120I	GGNCC	3 cut(s)	212, 554, 1039
BmiI	GGNNCC	2 cut(s)	555, 659
BmrFI	CCNGG	2 cut(s)	51, 935
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	6 cut(s)	340, 442, 565, 763, 862, 991
BmtI	GCTAGC	2 cut(s)	426, 522
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	956
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	1047
BsaJI	CCNNGG	3 cut(s)	215, 933, 1035
BsaWI	WCCGGW	1 cut(s)	616
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	158, 590
BseBI	CCWGG	2 cut(s)	51, 935
BseDI	CCNNGG	3 cut(s)	215, 933, 1035
BseGI	GGATG	3 cut(s)	355, 580, 646
BseNI	ACTGG	2 cut(s)	158, 590
BseXI	GCAGC	4 cut(s)	442, 495, 601, 991
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	322, 617
BslFI	GGGAC	2 cut(s)	164, 567
BsmFI	GGGAC	2 cut(s)	164, 567
BsnI	GGCC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	283, 925
BspACI	CCGC	5 cut(s)	202, 522, 542, 817, 1072
BspANI	GGCC	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	555, 659
BspOI	GCTAGC	2 cut(s)	426, 522
BspPI	GGATC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	817
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	158, 590
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	215, 933, 1035
BssMI	GATC	2 cut(s)	283, 925
BssT1I	CCWWGG	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	51, 935
Bst4CI	ACNGT	3 cut(s)	528, 707, 1162
Bst6I	CTCTTC	2 cut(s)	136, 1074
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	424, 428, 520
BstDEI	CTNAG	1 cut(s)	1182
BstDSI	CCRYGG	1 cut(s)	1035
BstF5I	GGATG	3 cut(s)	355, 580, 646
BstKTI	GATC	2 cut(s)	286, 928
BstMBI	GATC	2 cut(s)	283, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	2 cut(s)	51, 935
BstNSI	RCATGY	1 cut(s)	1028
BstSCI	CCNGG	2 cut(s)	49, 933
BstSFI	CTRYAG	2 cut(s)	558, 867
BstV1I	GCAGC	4 cut(s)	442, 495, 601, 991
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	1035
BtsCI	GGATG	3 cut(s)	355, 580, 646
BtsIMutI	CAGTG	2 cut(s)	385, 629
Cac8I	GCNNGC	3 cut(s)	424, 428, 520
CaiI	CAGNNNCTG	2 cut(s)	974, 1004
CciI	TCATGA	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	3 cut(s)	212, 554, 1039
CseI	GACGC	2 cut(s)	48, 996
Csp6I	GTAC	1 cut(s)	243
CspCI	CAANNNNNGTGG	2 cut(s)	581, 616
CviAII	CATG	6 cut(s)	5, 185, 434, 464, 980, 1025
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	1182
DpnI	GATC	2 cut(s)	285, 927
DpnII	GATC	2 cut(s)	283, 925
DriI	GACNNNNNGTC	1 cut(s)	1138
Eam1104I	CTCTTC	2 cut(s)	136, 1074
Eam1105I	GACNNNNNGTC	1 cut(s)	1138
EarI	CTCTTC	2 cut(s)	136, 1074
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	212, 554, 1039
Eco53kI	GAGCTC	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	49, 933
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	215
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	6 cut(s)	8, 188, 437, 467, 983, 1028
FaqI	GGGAC	2 cut(s)	164, 567
FatI	CATG	6 cut(s)	4, 184, 433, 463, 979, 1024
FauI	CCCGC	1 cut(s)	810
FbaI	TGATCA	1 cut(s)	925
FblI	GTMKAC	1 cut(s)	1128
Fnu4HI	GCNGC	4 cut(s)	456, 484, 590, 1005
FokI	GGATG	3 cut(s)	362, 587, 653
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	456, 484, 590, 1005
FspBI	CTAG	6 cut(s)	267, 326, 423, 519, 858, 1176
GluI	GCNGC	4 cut(s)	456, 484, 590, 1005
GsuI	CTGGAG	1 cut(s)	956
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	2 cut(s)	322, 617
HgaI	GACGC	2 cut(s)	48, 996
Hin1II	CATG	6 cut(s)	8, 188, 437, 467, 983, 1028
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	5 cut(s)	158, 311, 727, 881, 896
HpaII	CCGG	2 cut(s)	322, 617
HphI	GGTGA	2 cut(s)	736, 1097
Hpy166II	GTNNAC	5 cut(s)	38, 127, 394, 1039, 1129
Hpy188I	TCNGA	5 cut(s)	66, 250, 880, 1051, 1111
Hpy188III	TCNNGA	4 cut(s)	297, 464, 710, 719
Hpy8I	GTNNAC	5 cut(s)	38, 127, 394, 1039, 1129
HpyAV	CCTTC	4 cut(s)	226, 565, 826, 1147
HpyCH4III	ACNGT	3 cut(s)	528, 707, 1162
HpyCH4V	TGCA	4 cut(s)	4, 353, 491, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	1 cut(s)	1182
Hsp92II	CATG	6 cut(s)	8, 188, 437, 467, 983, 1028
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	2 cut(s)	283, 925
Lsp1109I	GCAGC	4 cut(s)	442, 495, 601, 991
LweI	GCATC	6 cut(s)	340, 442, 565, 763, 862, 991
MaeI	CTAG	6 cut(s)	267, 326, 423, 519, 858, 1176
MaeIII	GTNAC	4 cut(s)	334, 662, 697, 1085
MalI	GATC	2 cut(s)	285, 927
MbiI	CCGCTC	1 cut(s)	817
MboI	GATC	2 cut(s)	283, 925
MboII	GAAGA	7 cut(s)	150, 153, 184, 238, 252, 487, 1091
MfeI	CAATTG	1 cut(s)	1143
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	9 cut(s)	178, 300, 356, 611, 756, 803, 909, 1094, 1143
MmeI	TCCRAC	2 cut(s)	273, 1056
MnlI	CCTC	9 cut(s)	57, 141, 340, 376, 441, 460, 715, 1042, 1075
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	6 cut(s)	303, 369, 405, 513, 846, 903
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	2 cut(s)	322, 617
MspR9I	CCNGG	2 cut(s)	51, 935
MunI	CAATTG	1 cut(s)	1143
MvaI	CCWGG	2 cut(s)	51, 935
MwoI	GCNNNNNNNGC	1 cut(s)	700
NdeII	GATC	2 cut(s)	283, 925
NheI	GCTAGC	2 cut(s)	422, 518
NlaIII	CATG	6 cut(s)	8, 188, 437, 467, 983, 1028
NlaIV	GGNNCC	2 cut(s)	555, 659
NmuCI	GTSAC	4 cut(s)	334, 662, 697, 1085
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1028
NspV	TTCGAA	1 cut(s)	224
PagI	TCATGA	1 cut(s)	463
PciI	ACATGT	1 cut(s)	1024
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	5 cut(s)	158, 311, 727, 881, 896
PkrI	GCNGC	4 cut(s)	457, 485, 591, 1006
PpuMI	RGGWCCY	1 cut(s)	554
PscI	ACATGT	1 cut(s)	1024
PsiI	TTATAA	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	2 cut(s)	49, 933
PspGI	CCWGG	2 cut(s)	49, 933
PspN4I	GGNNCC	2 cut(s)	555, 659
PspPI	GGNCC	3 cut(s)	212, 554, 1039
PspPPI	RGGWCCY	1 cut(s)	554
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PstNI	CAGNNNCTG	2 cut(s)	974, 1004
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	6 cut(s)	303, 369, 405, 513, 846, 903
SatI	GCNGC	4 cut(s)	456, 484, 590, 1005
Sau3AI	GATC	2 cut(s)	283, 925
Sau96I	GGNCC	3 cut(s)	212, 554, 1039
ScaI	AGTACT	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	51, 935
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	6 cut(s)	340, 442, 565, 763, 862, 991
SfcI	CTRYAG	2 cut(s)	558, 867
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	3 cut(s)	212, 554, 1039
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	1062
SmoI	CTYRAG	1 cut(s)	1062
SpeI	ACTAGT	1 cut(s)	1175
Sse9I	AATT	9 cut(s)	178, 300, 356, 611, 756, 803, 909, 1094, 1143
SsiI	CCGC	5 cut(s)	202, 522, 542, 817, 1072
SspMI	CTAG	6 cut(s)	267, 326, 423, 519, 858, 1176
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	49, 933
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	3 cut(s)	528, 707, 1162
TaqI	TCGA	2 cut(s)	224, 709
TasI	AATT	9 cut(s)	178, 300, 356, 611, 756, 803, 909, 1094, 1143
TatI	WGTACW	1 cut(s)	242
TfiI	GAWTC	5 cut(s)	158, 311, 727, 881, 896
Tru1I	TTAA	6 cut(s)	303, 369, 405, 513, 846, 903
Tru9I	TTAA	6 cut(s)	303, 369, 405, 513, 846, 903
TscAI	CASTG	2 cut(s)	385, 629
TseFI	GTSAC	4 cut(s)	334, 662, 697, 1085
TseI	GCWGC	4 cut(s)	455, 483, 589, 1004
Tsp45I	GTSAC	4 cut(s)	334, 662, 697, 1085
TspDTI	ATGAA	6 cut(s)	78, 84, 245, 252, 303, 921
TspGWI	ACGGA	3 cut(s)	225, 650, 1024
TspRI	CASTG	2 cut(s)	385, 629
VpaK11BI	GGWCC	3 cut(s)	212, 554, 1039
XapI	RAATTY	4 cut(s)	356, 756, 803, 909
XceI	RCATGY	1 cut(s)	1028
XmiI	GTMKAC	1 cut(s)	1128
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	6 cut(s)	267, 326, 423, 519, 858, 1176
ZrmI	AGTACT	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.