Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8297957.1

Orthogroup ID

OG0005296

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 703

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8297957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 439 bp

atgcatgttgtatcaccggtaatgtacagtgataatccatctcttctgtatcactctggttatggtttcaatcccgaaattgcatatggaccatattcaccggttgctacacctttggcttcttatttggtagatggccagctctattctccacaacaggtccccttctctccatcttattaccctcaaccatctcctccaagtctgtctcatattacttcagctattccagtgacaccaactgatcggatgacctcagaaagtagtagcactgacaacatggcctttgggccaggatcaggttactttgtaaattttagatcatttagtggaggagatctatctggaaatcttggttcgagccctttagcatctccagggatttaccctcagccaatgggcatacttggatcttatgagcacagtgttgggcaggttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

146

Amino Acids

15.46

Weight (kDa)

4.66

Isoelectric Point (pI)

67.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58190 AT5G58190
fragaria_vesca	FvH4_4g00190 FvH4_4g00190 FvH4_4g00190 FvH4_4g00190
malus_domestica	MD04G1001900.v1.1 MD13G1285600.v1.1
prunus_persica	Prupe.1G002400_v2.0.a1
pyrus_communis	pycom04g00250 pycom420g00560
rosa_chinensis	RchiOBHm_Chr4g0384791 RchiOBHm_Chr4g0384881
rosa_laevigata	RLG00000010269
rosa_multiflora	Rmu_co8261087.1_g000001 Rmu_co8297957.1_g000001 Rmu_sc0003822.1_g000028 Rmu_ssc0000137.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332860
rosa_rugosa	Rorug03G0297600 Rorug03G0297700 Rorug03G0297800
rosa_samantha	Rh4AG001500 Rh4BG001300 Rh4CG001200 Rh4CG001800 Rh4DG001300
rosa_wichuraiana	Rw0G012840 Rw4G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AclWI	GGATC	2 cut(s)	304, 418
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgeI	ACCGGT	2 cut(s)	16, 100
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	292, 376
AluBI	AGCT	2 cut(s)	142, 224
AluI	AGCT	2 cut(s)	142, 224
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	304, 418
AoxI	GGCC	3 cut(s)	136, 282, 290
ApoI	RAATTY	1 cut(s)	313
AsiGI	ACCGGT	2 cut(s)	16, 100
AspS9I	GGNCC	3 cut(s)	89, 160, 290
AsuHPI	GGTGA	2 cut(s)	6, 90
AvaII	GGWCC	2 cut(s)	89, 160
BalI	TGGCCA	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	390
BccI	CCATC	4 cut(s)	46, 128, 181, 199
BciT130I	CCWGG	2 cut(s)	294, 378
BcoDI	GTCTC	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	294, 378
Bme18I	GGWCC	2 cut(s)	89, 160
BmgT120I	GGNCC	3 cut(s)	89, 160, 290
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	294, 378
BmsI	GCATC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	2 cut(s)	16, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	2 cut(s)	16, 100
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	294, 378
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	270, 404
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	186, 348
BshFI	GGCC	3 cut(s)	138, 284, 292
BshTI	ACCGGT	2 cut(s)	16, 100
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	17, 101
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	138, 284, 292
Bsp1286I	GDGCHC	2 cut(s)	365, 423
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	5 cut(s)	244, 296, 320, 337, 410
BspANI	GGCC	3 cut(s)	138, 284, 292
BspCNI	CTCAG	2 cut(s)	269, 403
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	304, 418
BsrFI	RCCGGY	2 cut(s)	16, 100
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	2 cut(s)	16, 100
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	5 cut(s)	244, 296, 320, 337, 410
Bst2UI	CCWGG	2 cut(s)	294, 378
Bst4CI	ACNGT	2 cut(s)	29, 425
Bst6I	CTCTTC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	256, 390
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	5 cut(s)	247, 299, 323, 340, 413
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	5 cut(s)	244, 296, 320, 337, 410
BstNI	CCWGG	2 cut(s)	294, 378
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	292, 376
BstX2I	RGATCY	2 cut(s)	337, 410
BstYI	RGATCY	2 cut(s)	337, 410
BsuRI	GGCC	3 cut(s)	138, 284, 292
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	4 cut(s)	34, 237, 270, 430
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	140
Cfr10I	RCCGGY	2 cut(s)	16, 100
Cfr13I	GGNCC	3 cut(s)	89, 160, 290
Csp6I	GTAC	1 cut(s)	25
CspAI	ACCGGT	2 cut(s)	16, 100
CviAII	CATG	2 cut(s)	5, 280
CviJI	RGCY	8 cut(s)	119, 138, 142, 224, 284, 292, 363, 394
CviKI_1	RGCY	8 cut(s)	119, 138, 142, 224, 284, 292, 363, 394
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	256, 390
DpnI	GATC	5 cut(s)	246, 298, 322, 339, 412
DpnII	GATC	5 cut(s)	244, 296, 320, 337, 410
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	89, 160
Eco57I	CTGAAG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	292, 376
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	365
FaeI	CATG	2 cut(s)	8, 283
FaiI	YATR	9 cut(s)	6, 63, 85, 87, 94, 213, 281, 404, 417
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	4, 279
FauNDI	CATATG	1 cut(s)	85
FokI	GGATG	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	138, 284, 292
HapII	CCGG	2 cut(s)	17, 101
Hin1II	CATG	2 cut(s)	8, 283
HpaII	CCGG	2 cut(s)	17, 101
HphI	GGTGA	2 cut(s)	6, 90
Hpy188I	TCNGA	2 cut(s)	249, 259
Hpy188III	TCNNGA	2 cut(s)	74, 345
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	29, 425
HpyCH4V	TGCA	2 cut(s)	4, 83
HpyF3I	CTNAG	2 cut(s)	256, 390
Hsp92II	CATG	2 cut(s)	8, 283
Kzo9I	GATC	5 cut(s)	244, 296, 320, 337, 410
LweI	GCATC	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	232, 302
MalI	GATC	5 cut(s)	246, 298, 322, 339, 412
MboI	GATC	5 cut(s)	244, 296, 320, 337, 410
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	2 cut(s)	337, 410
MhlI	GDGCHC	2 cut(s)	365, 423
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	2 cut(s)	78, 313
MluNI	TGGCCA	1 cut(s)	138
MnlI	CCTC	5 cut(s)	195, 207, 265, 326, 399
Mox20I	TGGCCA	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	2 cut(s)	17, 101
MspR9I	CCNGG	2 cut(s)	294, 378
MvaI	CCWGG	2 cut(s)	294, 378
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	5 cut(s)	244, 296, 320, 337, 410
NlaIII	CATG	2 cut(s)	8, 283
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PinAI	ACCGGT	2 cut(s)	16, 100
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	292, 376
PspGI	CCWGG	2 cut(s)	292, 376
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	89, 160, 290
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	337, 410
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
Sau3AI	GATC	5 cut(s)	244, 296, 320, 337, 410
Sau96I	GGNCC	3 cut(s)	89, 160, 290
ScrFI	CCNGG	2 cut(s)	294, 378
SduI	GDGCHC	2 cut(s)	365, 423
SetI	ASST	7 cut(s)	115, 144, 162, 226, 257, 304, 438
SfaNI	GCATC	1 cut(s)	380
SinI	GGWCC	2 cut(s)	89, 160
Sse9I	AATT	2 cut(s)	78, 313
StyD4I	CCNGG	2 cut(s)	292, 376
TaaI	ACNGT	2 cut(s)	29, 425
TaqI	TCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	78, 313
TatI	WGTACW	1 cut(s)	24
TscAI	CASTG	4 cut(s)	34, 237, 277, 430
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspRI	CASTG	4 cut(s)	34, 237, 277, 430
VpaK11BI	GGWCC	2 cut(s)	89, 160
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.