Rorug03G0297700

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005296
Physical Location & Seq
Forward (+)
30737484 .. 30783755
46272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0297700.1

Sequence Viewer

Length: 735 bp
ATGAGTGTGCTGTTAAACAAGATCCACAGGAATCAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCTAGCCTCTATGCCCATCACGGTTTATATGTCTGTGAGGGACAGGTTATCCACTTCACTCGGGCTGCTGGGCGGGAAATTGACACGGGAACTATGTTAGACCGTTTCATTTTCAGCTCATCTCCATCCCATTCTTTGGAGAATCCCTGCCCGAGTTGCGGTTATCCATCAGGGCGTGATGGTGGTGTCGTATCTTCTTGCCTAGATTGTTTTCTGTCGGGTGGTGATCCATACCTCTATGAATATGGTGTCAGTCGAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTCTAGCCTTGCCTCGTCTGATCCATCTGAAGATGTCCTTCACCGTGCCTTTAACCTTCTCCTGAATGGTTTTGGCAGCTACTGCCCTATCAAAAACAATTGCGAAGACTTTGCAATTTATTGCAAAACAAGTTTGCTTGTTCGTACTAGCATTACTTGTATCATTAGTGCGGGAAAGAGTGGGCAGGTAGTCTCCATTGACGCTGCTGCAACTGCAACTGCAACTGCAACCGCAACTGCTAGTGCTATTGCTTATTCATCGGCTCGATATTTGCCTACTACTTTGAGTGGTCTGAGTGCTTTCGATCGGTGCTTTTTGTGGTCAGAGTGCTCTCGTTGCTGGAATTTATTGTCTCGAACGATTGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

244

Amino Acids

26.42

Weight (kDa)

7.52

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 166 1.8e-22 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 208
AciI CCGC 4 cut(s) 145, 231, 533, 594
AclWI GGATC 3 cut(s) 16, 293, 377
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 361, 508
AfiI CCNNNNNNNGG 2 cut(s) 208, 230
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 2 cut(s) 189, 441
AluI AGCT 2 cut(s) 189, 441
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 2 cut(s) 559, 720
AlwI GGATC 3 cut(s) 16, 293, 377
AlwNI CAGNNNCTG 1 cut(s) 444
Ama87I CYCGRG 2 cut(s) 132, 223
ApeKI GCWGC 4 cut(s) 137, 438, 566, 569
ApoI RAATTY 1 cut(s) 706
Asp718I GGTACC 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 59, 308, 395
AsuNHI GCTAGC 1 cut(s) 74
AvaI CYCGRG 2 cut(s) 132, 223
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 695
BbvI GCAGC 4 cut(s) 124, 450, 553, 556
BccI CCATC 5 cut(s) 96, 205, 245, 247, 394
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 559, 720
BfaI CTAG 5 cut(s) 75, 275, 366, 510, 603
BfuAI ACCTGC 1 cut(s) 538
BisI GCNGC 4 cut(s) 138, 439, 567, 570
BlsI GCNGC 4 cut(s) 139, 440, 568, 571
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 2 cut(s) 132, 223
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 45
BmtI GCTAGC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 474
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 230
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 208, 230
BseMII CTCAG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 4 cut(s) 124, 450, 553, 556
BseYI CCCAGC 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 670
BshNI GGYRCC 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 695
BsiHKCI CYCGRG 2 cut(s) 132, 223
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 208, 230
BsmAI GTCTC 2 cut(s) 559, 720
BsmFI GGGAC 1 cut(s) 126
BsoBI CYCGRG 2 cut(s) 132, 223
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 5 cut(s) 21, 49, 298, 382, 667
BspACI CCGC 4 cut(s) 145, 231, 533, 594
BspCNI CTCAG 1 cut(s) 648
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 538
BspOI GCTAGC 1 cut(s) 78
BspPI GGATC 3 cut(s) 16, 293, 377
BspT107I GGYRCC 1 cut(s) 359
BssMI GATC 5 cut(s) 21, 49, 298, 382, 667
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 95, 176, 407
BstAPI GCANNNNNTGC 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 656
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 5 cut(s) 24, 52, 301, 385, 670
BstMAI GTCTC 2 cut(s) 559, 720
BstMBI GATC 5 cut(s) 21, 49, 298, 382, 667
BstMCI CGRYCG 1 cut(s) 670
BstMWI GCNNNNNNNGC 4 cut(s) 228, 444, 575, 699
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 4 cut(s) 124, 450, 553, 556
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BtsCI GGATG 1 cut(s) 197
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 444
CseI GACGC 1 cut(s) 572
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 2 cut(s) 360, 507
CviAII CATG 1 cut(s) 63
CviJI RGCY 8 cut(s) 78, 137, 189, 332, 350, 369, 441, 626
CviKI_1 RGCY 8 cut(s) 78, 137, 189, 332, 350, 369, 441, 626
CviQI GTAC 2 cut(s) 360, 507
DdeI CTNAG 1 cut(s) 656
DpnI GATC 5 cut(s) 23, 51, 300, 384, 669
DpnII GATC 5 cut(s) 21, 49, 298, 382, 667
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 2 cut(s) 132, 223
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 66
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 62
FauI CCCGC 2 cut(s) 138, 526
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 4 cut(s) 138, 439, 567, 570
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 4 cut(s) 138, 439, 567, 570
FspBI CTAG 5 cut(s) 75, 275, 366, 510, 603
GluI GCNGC 4 cut(s) 138, 439, 567, 570
GsaI CCCAGC 1 cut(s) 144
HgaI GACGC 1 cut(s) 572
Hin1II CATG 1 cut(s) 66
HinfI GANTC 2 cut(s) 31, 214
HphI GGTGA 3 cut(s) 59, 308, 395
Hpy188I TCNGA 5 cut(s) 382, 391, 657, 688, 734
Hpy188III TCNNGA 2 cut(s) 424, 717
HpyAV CCTTC 3 cut(s) 343, 410, 428
HpyCH4III ACNGT 3 cut(s) 95, 176, 407
HpyCH4V TGCA 6 cut(s) 476, 486, 572, 578, 584, 590
HpyF10VI GCNNNNNNNGC 4 cut(s) 228, 444, 575, 699
HpyF3I CTNAG 1 cut(s) 656
Hsp92II CATG 1 cut(s) 66
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 21, 49, 298, 382, 667
Lsp1109I GCAGC 4 cut(s) 124, 450, 553, 556
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 5 cut(s) 75, 275, 366, 510, 603
MalI GATC 5 cut(s) 23, 51, 300, 384, 669
MboI GATC 5 cut(s) 21, 49, 298, 382, 667
MboII GAAGA 3 cut(s) 258, 404, 479
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 695
MluCI AATT 4 cut(s) 150, 460, 477, 706
MnlI CCTC 7 cut(s) 89, 103, 317, 347, 350, 373, 385
MseI TTAA 2 cut(s) 14, 414
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 228, 444, 575, 699
NdeII GATC 5 cut(s) 21, 49, 298, 382, 667
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 361
PfeI GAWTC 2 cut(s) 31, 214
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 4 cut(s) 139, 440, 568, 571
Ple19I CGATCG 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 21
PvuI CGATCG 1 cut(s) 670
RsaI GTAC 2 cut(s) 361, 508
RsaNI GTAC 2 cut(s) 360, 507
SaqAI TTAA 2 cut(s) 14, 414
SatI GCNGC 4 cut(s) 138, 439, 567, 570
Sau3AI GATC 5 cut(s) 21, 49, 298, 382, 667
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 695
SetI ASST 9 cut(s) 46, 120, 191, 309, 361, 365, 420, 443, 552
SexAI ACCWGGT 1 cut(s) 43
Sse9I AATT 4 cut(s) 150, 460, 477, 706
SsiI CCGC 4 cut(s) 145, 231, 533, 594
SspMI CTAG 5 cut(s) 75, 275, 366, 510, 603
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 3 cut(s) 95, 176, 407
TaqI TCGA 4 cut(s) 328, 628, 666, 718
TasI AATT 4 cut(s) 150, 460, 477, 706
TfiI GAWTC 2 cut(s) 31, 214
Tru1I TTAA 2 cut(s) 14, 414
Tru9I TTAA 2 cut(s) 14, 414
TseI GCWGC 4 cut(s) 137, 438, 566, 569
TspDTI ATGAA 3 cut(s) 169, 327, 609
Van91I CCANNNNNTGG 1 cut(s) 208
XapI RAATTY 1 cut(s) 706
XspI CTAG 5 cut(s) 75, 275, 366, 510, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.