Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004997

Physical Location & Seq

Genomic Coordinates Reverse (-)

30701334 .. 30705077

Gene Structure 3744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

ATGATGGAAAACGTTGTGTTCTACCAAACGGATTGCGAGACCCTTTGGTCTCAGATTAAATGCAAAGAGAAGCAGATTCAACTCAAACGGAGCAGGTGGTTGTTGGGTCTTCCTCTCTCTGAATCTGAGCACACCCTGTTTCAAAGTCCTGACTTTGAACGAGATTCATTGCCGGAATCTTTGCTCAGGGAAGATGATCTGTTCTATGAGACTGCAAAGTCTTCTGTTCAAGCAGCCTTTGGAGCATGCAATGTTGAAGCAGGGAAGCGAGATAATATTCTAATGCTCGACAGAAGAAGTATATCCACAGCCTTGTCATCGCCATGCCTTGATGATCTGACTACTAAGGGGCTTCACCTTATAGCTACTACACTTGCAGCAGGGTCAGTCAAGTTTGAGAACACTCGTTGCGAGATGAAGAAGTTTATCAGAGAATCTCTGCAAAAAAAATTTGGAAGCCAAAATAATCATGACGATGATGAGTTGGGCATTTTTAAGCAACTATCTCAATATCTTAGTGACCCACAAAATTTCCGAGATAAGGTTGTTACAGTTCTTTCCAGATCACAGTCTCAACGTCTTGCTGTTAGAAAGGTACTGGATGGACTTGAGGACTTGCCTTCTGAGACCCTATTTGCAATGAGCAGAAGGCTTAAAGGAGTACAACATTTACCTCAGTTACATCAAAAGAAAAATACATTGTACAAAAAGACTTTGATTGATCAATTGCGGAAAACTTGTGACACGATGCTTTCCGAACTTGGTACAGGAGATGAACTGCAGGAATCACTAGCCAAAGCCATGGCAGTAGCAGGCCTAGCAGTGAAGTTACAACCAGGTCTCCATAATTCGACTGTAACAGAATTTCGCCAATTTTCACAAGAGATAATGATACTGCAGGATGATATTGCAAGGGCTATTTGGCTAGTTGAAAAAAAGGTTAGCTTGCAAGAGCTCGAAAAGTTGAAGACTATATTAGGCCAAGATGCTGAAGTATCAAACAGGAGCTTACGATATGCAATTAAGAAAATGCTAACTGAATATCTCTTCGAGTGTGGTGATATGGATACAATTCCAAAGTCATTATTAGAAGCTCTTGATATTATCAACATGTCACAAAACAAGCTGCATAGACCCATCTTAAAGGATGAAATTGAAGAAGAGGTGGAATGTATATTGAATGTGAGTGCTCAGGCAAAGCAGATTGTATGGGATATGTTCCCTGACCATGAGTTAGATCTAGACTTTGCTGAGGCATATGTTGAGGAAATGGAGGATGAAGACGATGATGAGGATGACGAGGATGATGGTGATGATAGGTCTAGCAATGATGATAACAACCATAATCATGGTTCGCCACAGGAACAAAGAATATCTGGAAGTGACAGATCTCACTCTGATGATTCACATTATGAGGATGAAAGCACTGGGGAAACAATGTTCTCCAATCAAGGAACTTCTCATGATTTCAATGGTATTAGGCGAGGGTTTCCTGGGACTTCTACTGAGAGACATGAACCTGAACATGACACTGGAATGGATACGGAAGACCCCTTGCATGTCGAGCCAGATGATGTGCATAAACAAACCACTTGTAACCAATACCTTGCAATTCAAGAAGTGTCCGATAAGACAAGCATGATAGCCCATGATCTTGTTGGTCATATGTTGGAGGAGTTTGCACAGAAAGATGGCTTGGATTTGGACTGGGATGATACATTATATCTGAAAGGTGATTGTGCAACTCGAGAAGATTCAGGAGTGGTAGAAGAAAGGCAGACATTGTCTCTGGAGAACAAAGGCGGTTCTGTAATTGTTAGTGTAATTGAGGATCTAATACCTTCATTTCCAAAGAGCGGAATCGAAGCATTAAGGAACTTGGTGGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CemA

Protein Analysis

630

Amino Acids

71.46

Weight (kDa)

4.69

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31040
fragaria_vesca	FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180
malus_domestica	MD04G1001800.v1.1 MD10G1290500.v1.1
prunus_persica	Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1
pyrus_communis	pycom04g00240 pycom420g00290
rosa_chinensis	RchiOBHm_Chr4g0384781
rosa_laevigata	RLG00000010270
rosa_multiflora	Rmu_co8178212.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332850
rosa_rugosa	Rorug03G0297600 Rorug03G0297600
rosa_samantha	Rh4AG001400 Rh4BG001200 Rh4CG001100 Rh4DG001200
rosa_wichuraiana	Rw0G012830 Rw0G021960 Rw4G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	84
AasI	GACNNNNNNGTC	2 cut(s)	46, 217
Acc36I	ACCTGC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	1857
AciI	CCGC	3 cut(s)	730, 1803, 1857
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	1 cut(s)	1839
AcsI	RAATTY	3 cut(s)	449, 529, 863
AcuI	CTGAAG	1 cut(s)	1011
AfaI	GTAC	4 cut(s)	597, 663, 704, 766
AfiI	CCNNNNNNNGG	2 cut(s)	541, 1856
AflIII	ACRYGT	1 cut(s)	1110
AjnI	CCWGG	2 cut(s)	835, 1492
AjuI	GAANNNNNNNTTGG	2 cut(s)	1679, 1711
AloI	GAACNNNNNNTCC	2 cut(s)	1424, 1456
AluBI	AGCT	6 cut(s)	365, 945, 955, 1008, 1094, 1126
AluI	AGCT	6 cut(s)	365, 945, 955, 1008, 1094, 1126
Alw21I	GWGCWC	3 cut(s)	132, 957, 1192
Alw26I	GTCTC	8 cut(s)	32, 54, 203, 576, 620, 845, 1504, 1791
AlwI	GGATC	1 cut(s)	1839
Ama87I	CYCGRG	1 cut(s)	1746
AoxI	GGCC	2 cut(s)	814, 979
ApeKI	GCWGC	3 cut(s)	233, 377, 1126
ApoI	RAATTY	3 cut(s)	449, 529, 863
AsuHPI	GGTGA	4 cut(s)	347, 1070, 1322, 1745
AvaI	CYCGRG	1 cut(s)	1746
BanII	GRGCYC	1 cut(s)	957
BbsI	GAAGAC	5 cut(s)	101, 213, 974, 1287, 1554
Bbv12I	GWGCWC	3 cut(s)	132, 957, 1192
BbvCI	CCTCAGC	1 cut(s)	1251
BbvI	GCAGC	3 cut(s)	245, 389, 1113
BccI	CCATC	4 cut(s)	596, 1145, 1301, 1685
BciT130I	CCWGG	2 cut(s)	837, 1494
BciVI	GTATCC	2 cut(s)	1060, 1534
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	8 cut(s)	32, 54, 203, 576, 620, 845, 1504, 1791
BfaI	CTAG	5 cut(s)	791, 818, 926, 1241, 1323
BfmI	CTRYAG	2 cut(s)	779, 896
BfuAI	ACCTGC	1 cut(s)	84
BfuI	GTATCC	2 cut(s)	1060, 1534
BglII	AGATCT	2 cut(s)	1237, 1388
BisI	GCNGC	3 cut(s)	234, 378, 1127
BlsI	GCNGC	3 cut(s)	235, 379, 1128
Bme1390I	CCNGG	2 cut(s)	837, 1494
BmeT110I	CYCGRG	1 cut(s)	1746
BmrFI	CCNGG	2 cut(s)	837, 1494
BmrI	ACTGGG	2 cut(s)	1437, 1717
BmsI	GCATC	2 cut(s)	738, 976
BmuI	ACTGGG	2 cut(s)	1437, 1717
BpiI	GAAGAC	5 cut(s)	101, 213, 974, 1287, 1554
BpmI	CTGGAG	1 cut(s)	1811
Bpu10I	CCTNAGC	3 cut(s)	185, 1191, 1251
BpuEI	CTTGAG	1 cut(s)	629
BsaI	GGTCTC	4 cut(s)	32, 54, 620, 845
BsaJI	CCNNGG	2 cut(s)	801, 1493
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 1856
Bse1I	ACTGG	4 cut(s)	603, 1432, 1537, 1712
Bse3DI	GCAATG	4 cut(s)	167, 256, 645, 1333
BseBI	CCWGG	2 cut(s)	837, 1494
BseDI	CCNNGG	2 cut(s)	801, 1493
BseGI	GGATG	8 cut(s)	607, 907, 1153, 1282, 1300, 1309, 1423, 1717
BseLI	CCNNNNNNNGG	2 cut(s)	541, 1856
BseMI	GCAATG	4 cut(s)	167, 256, 645, 1333
BseMII	CTCAG	8 cut(s)	65, 117, 199, 615, 689, 1205, 1242, 1497
BseNI	ACTGG	4 cut(s)	603, 1432, 1537, 1712
BseRI	GAGGAG	1 cut(s)	1688
BseXI	GCAGC	3 cut(s)	245, 389, 1113
BshFI	GGCC	2 cut(s)	816, 981
BsiHKAI	GWGCWC	3 cut(s)	132, 957, 1192
BsiHKCI	CYCGRG	1 cut(s)	1746
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	1510
BslI	CCNNNNNNNGG	2 cut(s)	541, 1856
BsmAI	GTCTC	8 cut(s)	32, 54, 203, 576, 620, 845, 1504, 1791
BsmFI	GGGAC	1 cut(s)	1510
BsnI	GGCC	2 cut(s)	816, 981
Bso31I	GGTCTC	4 cut(s)	32, 54, 620, 845
BsoBI	CYCGRG	1 cut(s)	1746
Bsp1286I	GDGCHC	3 cut(s)	132, 957, 1192
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	3 cut(s)	730, 1803, 1857
BspANI	GGCC	2 cut(s)	816, 981
BspCNI	CTCAG	8 cut(s)	64, 118, 198, 616, 688, 1204, 1243, 1498
BspHI	TCATGA	2 cut(s)	469, 1462
BspMAI	CTGCAG	2 cut(s)	783, 900
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	1839
BspTNI	GGTCTC	4 cut(s)	32, 54, 620, 845
BsrBI	CCGCTC	1 cut(s)	1857
BsrDI	GCAATG	4 cut(s)	167, 256, 645, 1333
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	4 cut(s)	603, 1432, 1537, 1712
BssECI	CCNNGG	2 cut(s)	801, 1493
BssMI	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	2 cut(s)	837, 1494
Bst4CI	ACNGT	3 cut(s)	553, 570, 856
Bst6I	CTCTTC	2 cut(s)	1052, 1155
BstAUI	TGTACA	1 cut(s)	702
BstC8I	GCNNGC	3 cut(s)	247, 814, 947
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	8 cut(s)	607, 907, 1153, 1282, 1300, 1309, 1423, 1717
BstKTI	GATC	8 cut(s)	199, 337, 566, 724, 1240, 1391, 1654, 1834
BstMAI	GTCTC	8 cut(s)	32, 54, 203, 576, 620, 845, 1504, 1791
BstMBI	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 818, 1564
BstNI	CCWGG	2 cut(s)	837, 1494
BstNSI	RCATGY	3 cut(s)	249, 1114, 1562
BstSCI	CCNGG	2 cut(s)	835, 1492
BstSFI	CTRYAG	2 cut(s)	779, 896
BstV1I	GCAGC	3 cut(s)	245, 389, 1113
BstV2I	GAAGAC	5 cut(s)	101, 213, 974, 1287, 1554
BstX2I	RGATCY	3 cut(s)	1237, 1388, 1831
BstXI	CCANNNNNNTGG	2 cut(s)	802, 1349
BstYI	RGATCY	3 cut(s)	1237, 1388, 1831
BsuI	GTATCC	2 cut(s)	1060, 1534
BsuRI	GGCC	2 cut(s)	816, 981
BtgI	CCRYGG	1 cut(s)	801
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	8 cut(s)	607, 907, 1153, 1282, 1300, 1309, 1423, 1717
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	3 cut(s)	828, 1425, 1530
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	247, 814, 947
CciI	TCATGA	2 cut(s)	469, 1462
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	4 cut(s)	596, 662, 703, 765
CviQI	GTAC	4 cut(s)	596, 662, 703, 765
DpnI	GATC	8 cut(s)	198, 336, 565, 723, 1239, 1390, 1653, 1833
DpnII	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
DrdI	GACNNNNNNGTC	2 cut(s)	46, 217
DseDI	GACNNNNNNGTC	2 cut(s)	46, 217
Eam1104I	CTCTTC	2 cut(s)	1052, 1155
EarI	CTCTTC	2 cut(s)	1052, 1155
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	1 cut(s)	801
Eco147I	AGGCCT	1 cut(s)	816
Eco24I	GRGCYC	1 cut(s)	957
Eco31I	GGTCTC	4 cut(s)	32, 54, 620, 845
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	1 cut(s)	1011
Eco88I	CYCGRG	1 cut(s)	1746
EcoICRI	GAGCTC	1 cut(s)	955
EcoRII	CCWGG	2 cut(s)	835, 1492
EcoT14I	CCWWGG	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	1 cut(s)	801
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FaqI	GGGAC	1 cut(s)	1510
FauNDI	CATATG	2 cut(s)	1258, 1665
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	234, 378, 1127
FokI	GGATG	8 cut(s)	614, 914, 1160, 1289, 1307, 1316, 1430, 1724
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	3 cut(s)	234, 378, 1127
FspBI	CTAG	5 cut(s)	791, 818, 926, 1241, 1323
GluI	GCNGC	3 cut(s)	234, 378, 1127
GsuI	CTGGAG	1 cut(s)	1811
HaeIII	GGCC	2 cut(s)	816, 981
HapII	CCGG	1 cut(s)	173
HinfI	GANTC	9 cut(s)	76, 122, 164, 176, 434, 785, 1403, 1754, 1860
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	4 cut(s)	347, 1070, 1322, 1745
HpyAV	CCTTC	3 cut(s)	630, 642, 1851
HpyCH4III	ACNGT	3 cut(s)	553, 570, 856
HpyCH4IV	ACGT	2 cut(s)	12, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 818, 1564
HpySE526I	ACGT	2 cut(s)	12, 577
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
LmnI	GCTCC	3 cut(s)	90, 242, 1005
Lsp1109I	GCAGC	3 cut(s)	245, 389, 1113
LweI	GCATC	2 cut(s)	738, 976
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	5 cut(s)	791, 818, 926, 1241, 1323
MaeII	ACGT	2 cut(s)	12, 577
MaeIII	GTNAC	9 cut(s)	518, 547, 678, 740, 828, 856, 1113, 1382, 1595
MalI	GATC	8 cut(s)	198, 336, 565, 723, 1239, 1390, 1653, 1833
MbiI	CCGCTC	1 cut(s)	1857
MboI	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	3 cut(s)	1237, 1388, 1831
MhlI	GDGCHC	3 cut(s)	132, 957, 1192
MmeI	TCCRAC	1 cut(s)	1650
MseI	TTAA	6 cut(s)	57, 495, 654, 1023, 1142, 1871
MslI	CAYNNNNRTG	5 cut(s)	322, 474, 1347, 1398, 1535
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	837, 1494
MunI	CAATTG	1 cut(s)	725
MvaI	CCWGG	2 cut(s)	837, 1494
MwoI	GCNNNNNNNGC	3 cut(s)	242, 818, 1564
NcoI	CCATGG	1 cut(s)	801
NdeI	CATATG	2 cut(s)	1258, 1665
NdeII	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
NmuCI	GTSAC	4 cut(s)	518, 740, 1113, 1382
NspI	RCATGY	3 cut(s)	249, 1114, 1562
PaeI	GCATGC	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	1746
PagI	TCATGA	2 cut(s)	469, 1462
PaqCI	CACCTGC	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	816
PciI	ACATGT	1 cut(s)	1110
PfeI	GAWTC	9 cut(s)	76, 122, 164, 176, 434, 785, 1403, 1754, 1860
PflFI	GACNNNGTC	1 cut(s)	1783
PkrI	GCNGC	3 cut(s)	235, 379, 1128
PscI	ACATGT	1 cut(s)	1110
Psp124BI	GAGCTC	1 cut(s)	957
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	835, 1492
PspGI	CCWGG	2 cut(s)	835, 1492
PstI	CTGCAG	2 cut(s)	783, 900
PsuI	RGATCY	3 cut(s)	1237, 1388, 1831
PsyI	GACNNNGTC	1 cut(s)	1783
RsaI	GTAC	4 cut(s)	597, 663, 704, 766
RsaNI	GTAC	4 cut(s)	596, 662, 703, 765
RseI	CAYNNNNRTG	5 cut(s)	322, 474, 1347, 1398, 1535
SacI	GAGCTC	1 cut(s)	957
SaqAI	TTAA	6 cut(s)	57, 495, 654, 1023, 1142, 1871
SatI	GCNGC	3 cut(s)	234, 378, 1127
Sau3AI	GATC	8 cut(s)	196, 334, 563, 721, 1237, 1388, 1651, 1831
ScrFI	CCNGG	2 cut(s)	837, 1494
SduI	GDGCHC	3 cut(s)	132, 957, 1192
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	2 cut(s)	738, 976
SfcI	CTRYAG	2 cut(s)	779, 896
Sfr274I	CTCGAG	1 cut(s)	1746
SlaI	CTCGAG	1 cut(s)	1746
SmiMI	CAYNNNNRTG	5 cut(s)	322, 474, 1347, 1398, 1535
SmlI	CTYRAG	2 cut(s)	608, 1746
SmoI	CTYRAG	2 cut(s)	608, 1746
SphI	GCATGC	1 cut(s)	249
SseBI	AGGCCT	1 cut(s)	816
SsiI	CCGC	3 cut(s)	730, 1803, 1857
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	5 cut(s)	791, 818, 926, 1241, 1323
SstI	GAGCTC	1 cut(s)	957
StuI	AGGCCT	1 cut(s)	816
StyD4I	CCNGG	2 cut(s)	835, 1492
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	3 cut(s)	553, 570, 856
TaiI	ACGT	2 cut(s)	15, 580
TaqI	TCGA	7 cut(s)	288, 851, 957, 1050, 1563, 1747, 1863
TatI	WGTACW	2 cut(s)	661, 702
TfiI	GAWTC	9 cut(s)	76, 122, 164, 176, 434, 785, 1403, 1754, 1860
Tru1I	TTAA	6 cut(s)	57, 495, 654, 1023, 1142, 1871
Tru9I	TTAA	6 cut(s)	57, 495, 654, 1023, 1142, 1871
TscAI	CASTG	3 cut(s)	828, 1432, 1537
TseFI	GTSAC	4 cut(s)	518, 740, 1113, 1382
TseI	GCWGC	3 cut(s)	233, 377, 1126
Tsp45I	GTSAC	4 cut(s)	518, 740, 1113, 1382
TspDTI	ATGAA	8 cut(s)	156, 431, 789, 1164, 1293, 1434, 1530, 1833
TspGWI	ACGGA	3 cut(s)	44, 103, 1559
TspRI	CASTG	3 cut(s)	828, 1432, 1537
Tth111I	GACNNNGTC	1 cut(s)	1783
XapI	RAATTY	3 cut(s)	449, 529, 863
XbaI	TCTAGA	1 cut(s)	1240
XceI	RCATGY	3 cut(s)	249, 1114, 1562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1655
XhoI	CTCGAG	1 cut(s)	1746
XspI	CTAG	5 cut(s)	791, 818, 926, 1241, 1323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.