Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004997

Physical Location & Seq

Genomic Coordinates Forward (+)

177863 .. 183492

Gene Structure 5630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTTAATCATGTCCTCCCCCGCCGTCTTCTGCAAAACCTTTATCTTTGTTAACCCCAAGCTCAGGCTGCTCAGCCGCAACTCCTTCATTCTGCACAGAAATTGGTCGACGGCACTGGTGGTTGATACAAGGCGGTGGAGGTCTGCCGCTGCGGGGCACATTCCAAATGCTGGTGGCAAAAGGAAAAAGAAAAGGACTTGGTGGCAAACATTCTTTTTCGACGAAGACGGGAATTGGCTTGGTTTGAAGGAGGACGACATGCTGACGGCGGAGGAGGAGGACTTGGATGGATCCTCCGCAGCCGTCGCCATGGAAAAAGGTGAAGAAGCTGAGAAATTTGAGGCGTGGAAGACAAGGGCAGAAGCAATCGTGGAGCTGAGGGAAGCACAGCAGGATTTGACCAACGAGGAGAACCGCAAGTGGGAGGATTGGCTTGTGGATTCTAATTCTAAATCTACTTCCTTCTGGGAAGCATCTGTACAGTCGGATCCTGCTCAAGAAAGGGGATTGCTTTACTCTCTCAGCAATTTCGTCCTCGGAAAGGAAGAAGATGATGATGAGGACATGCTTTATGAAGACCGTGTTTTTCGCTATGCCTCACTCAATTCGGCTAAATTTTTGGCAGTATTAATAATCATACCCTGGACCTTGGATTTTGTGGTTCACGACTATGTTCTGATGCCCTTTTTAGACAGATATGTGAAGACCGTACCACTTGCAGCACAGTTGCTTGATGTCAGAAGAAATCAAAAGCTTCAAATGATTGATGAATTAAAAATGGAGAGAGCAAGATTTCATCTTGAGATGGAGATTGGTAAATCTCCACCGCTTTCTGATGACGAGGTTTGGTGGGAGTTGCGGCATAAAGCATTAGAGCTGAGAGATGAATGGAGATTAGAGAATCGTAAAGCCTTTGCCAACATATGGTCAGATATGATATTCGGGATCTCATTATTCATTCTTTTATACAGCAATCAGAGTAAAGTAGCATTGGTGAAGTTTACTGGTTATAAGATAATAAATAATATTTCAGATACCGGGAAGGCATTTCTAATTATACTTATCACAGATATATTTTTAGGGTATCATTCTGAGTCTGGTTGGCAAACATTGTCAGAAATTTTTGTTGAGCATTATGGGCTTGAGGTTGATCAGTCTGCCGTAACCATTTTCATTTGCCTGATTCCAGTTATCATGGATGCATGTGTCAAACTATGGCTGTTTAAATTCCTTCCAAGATTATCCCCAAAGGTGACAAACATATTCCGGGAAATGAAGCGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CemA

Protein Analysis

429

Amino Acids

49.98

Weight (kDa)

5.41

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31040
fragaria_vesca	FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180
malus_domestica	MD04G1001800.v1.1 MD10G1290500.v1.1
prunus_persica	Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1
pyrus_communis	pycom04g00240 pycom420g00290
rosa_chinensis	RchiOBHm_Chr4g0384781
rosa_laevigata	RLG00000010270
rosa_multiflora	Rmu_co8178212.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332850
rosa_rugosa	Rorug03G0297600 Rorug03G0297600
rosa_samantha	Rh4AG001400 Rh4BG001200 Rh4CG001100 Rh4DG001200
rosa_wichuraiana	Rw0G012830 Rw0G021960 Rw4G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1011
AccB7I	CCANNNNNTGG	2 cut(s)	170, 924
AccI	GTMKAC	1 cut(s)	107
AclWI	GGATC	5 cut(s)	285, 298, 482, 495, 953
AcsI	RAATTY	4 cut(s)	335, 614, 1119, 1226
AfaI	GTAC	2 cut(s)	480, 711
AfiI	CCNNNNNNNGG	6 cut(s)	63, 153, 170, 421, 541, 924
AgsI	TTSAA	2 cut(s)	247, 758
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	5 cut(s)	61, 329, 376, 754, 877
AluI	AGCT	5 cut(s)	61, 329, 376, 754, 877
AlwI	GGATC	5 cut(s)	285, 298, 482, 495, 953
ApeKI	GCWGC	4 cut(s)	67, 149, 299, 719
ApoI	RAATTY	4 cut(s)	335, 614, 1119, 1226
AseI	ATTAAT	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	645
AsuC2I	CCSGG	2 cut(s)	1039, 1268
AsuHPI	GGTGA	3 cut(s)	332, 1006, 1264
AvaII	GGWCC	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	159
BamHI	GGATCC	2 cut(s)	290, 487
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BbsI	GAAGAC	5 cut(s)	19, 231, 356, 582, 710
BbvCI	CCTCAGC	1 cut(s)	377
BbvI	GCAGC	4 cut(s)	54, 136, 311, 731
BccI	CCATC	2 cut(s)	281, 799
BceAI	ACGGC	5 cut(s)	8, 126, 282, 287, 1145
BciT130I	CCWGG	1 cut(s)	643
BclI	TGATCA	1 cut(s)	1150
BcnI	CCSGG	2 cut(s)	1039, 1268
BfaI	CTAG	1 cut(s)	1285
BisI	GCNGC	7 cut(s)	68, 76, 147, 150, 300, 720, 860
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	7 cut(s)	69, 77, 148, 151, 301, 721, 861
Bme1390I	CCNGG	3 cut(s)	643, 1039, 1268
Bme18I	GGWCC	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	2 cut(s)	292, 489
BmrFI	CCNGG	3 cut(s)	643, 1039, 1268
BmsI	GCATC	3 cut(s)	482, 669, 1189
BpiI	GAAGAC	5 cut(s)	19, 231, 356, 582, 710
Bpu10I	CCTNAGC	2 cut(s)	62, 377
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	3 cut(s)	480, 821, 1163
BpuMI	CCSGG	2 cut(s)	1039, 1268
BsaJI	CCNNGG	4 cut(s)	309, 535, 641, 648
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 153, 170, 421, 541, 924
Bse1I	ACTGG	3 cut(s)	120, 1009, 1187
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	4 cut(s)	309, 535, 641, 648
BseGI	GGATG	2 cut(s)	292, 1204
BseLI	CCNNNNNNNGG	6 cut(s)	63, 153, 170, 421, 541, 924
BseMII	CTCAG	7 cut(s)	76, 85, 321, 368, 535, 869, 1083
BseNI	ACTGG	3 cut(s)	120, 1009, 1187
BseRI	GAGGAG	3 cut(s)	287, 290, 422
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	4 cut(s)	54, 136, 311, 731
BsgI	GTGCAG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	1038, 1267
BslI	CCNNNNNNNGG	6 cut(s)	63, 153, 170, 421, 541, 924
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	290, 487, 945, 1150
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	309
BspCNI	CTCAG	7 cut(s)	75, 84, 322, 369, 534, 870, 1084
BspLI	GGNNCC	2 cut(s)	292, 489
BspPI	GGATC	5 cut(s)	285, 298, 482, 495, 953
BsrGI	TGTACA	1 cut(s)	478
BsrI	ACTGG	3 cut(s)	120, 1009, 1187
BssECI	CCNNGG	4 cut(s)	309, 535, 641, 648
BssMI	GATC	4 cut(s)	290, 487, 945, 1150
BssT1I	CCWWGG	2 cut(s)	309, 648
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	4 cut(s)	483, 581, 709, 726
BstAUI	TGTACA	1 cut(s)	478
BstDEI	CTNAG	7 cut(s)	62, 71, 330, 377, 521, 878, 1092
BstDSI	CCRYGG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	2 cut(s)	292, 1204
BstKTI	GATC	4 cut(s)	293, 490, 948, 1153
BstMBI	GATC	4 cut(s)	290, 487, 945, 1150
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 305, 1138
BstNI	CCWGG	1 cut(s)	643
BstNSI	RCATGY	3 cut(s)	262, 568, 1206
BstSCI	CCNGG	3 cut(s)	641, 1037, 1266
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	54, 136, 311, 731
BstV2I	GAAGAC	5 cut(s)	19, 231, 356, 582, 710
BstX2I	RGATCY	3 cut(s)	290, 487, 945
BstYI	RGATCY	3 cut(s)	290, 487, 945
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	292, 1204
BtsIMutI	CAGTG	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	645
CseI	GACGC	1 cut(s)	1268
Csp6I	GTAC	2 cut(s)	479, 710
CviAII	CATG	6 cut(s)	10, 259, 310, 565, 1195, 1203
CviQI	GTAC	2 cut(s)	479, 710
DdeI	CTNAG	7 cut(s)	62, 71, 330, 377, 521, 878, 1092
DpnI	GATC	4 cut(s)	292, 489, 947, 1152
DpnII	GATC	4 cut(s)	290, 487, 945, 1150
DraI	TTTAAA	1 cut(s)	1225
EciI	GGCGGA	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	309, 648
Eco47I	GGWCC	1 cut(s)	645
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	641
EcoT14I	CCWWGG	2 cut(s)	309, 648
EcoT22I	ATGCAT	1 cut(s)	1204
ErhI	CCWWGG	2 cut(s)	309, 648
FaeI	CATG	6 cut(s)	13, 262, 313, 568, 1198, 1206
FatI	CATG	6 cut(s)	9, 258, 309, 564, 1194, 1202
FauI	CCCGC	2 cut(s)	28, 145
FauNDI	CATATG	1 cut(s)	923
FbaI	TGATCA	1 cut(s)	1150
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	7 cut(s)	68, 76, 147, 150, 300, 720, 860
FokI	GGATG	2 cut(s)	299, 1211
Fsp4HI	GCNGC	7 cut(s)	68, 76, 147, 150, 300, 720, 860
FspBI	CTAG	1 cut(s)	1285
GluI	GCNGC	7 cut(s)	68, 76, 147, 150, 300, 720, 860
HapII	CCGG	2 cut(s)	1038, 1267
HgaI	GACGC	1 cut(s)	1268
Hin1II	CATG	6 cut(s)	13, 262, 313, 568, 1198, 1206
HincII	GTYRAC	2 cut(s)	52, 108
HindII	GTYRAC	2 cut(s)	52, 108
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	4 cut(s)	440, 901, 1094, 1183
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	1038, 1267
HphI	GGTGA	3 cut(s)	332, 1006, 1264
Hpy166II	GTNNAC	4 cut(s)	52, 108, 664, 1002
Hpy188III	TCNNGA	4 cut(s)	497, 665, 800, 943
Hpy8I	GTNNAC	4 cut(s)	52, 108, 664, 1002
Hpy99I	CGWCG	3 cut(s)	112, 224, 308
HpyAV	CCTTC	5 cut(s)	94, 241, 472, 1036, 1241
HpyCH4III	ACNGT	4 cut(s)	483, 581, 709, 726
HpyCH4V	TGCA	4 cut(s)	33, 94, 719, 1202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 305, 1138
HpyF3I	CTNAG	7 cut(s)	62, 71, 330, 377, 521, 878, 1092
Hsp92II	CATG	6 cut(s)	13, 262, 313, 568, 1198, 1206
Ksp22I	TGATCA	1 cut(s)	1150
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	290, 487, 945, 1150
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	4 cut(s)	54, 136, 311, 731
LweI	GCATC	3 cut(s)	482, 669, 1189
MaeI	CTAG	1 cut(s)	1285
MaeIII	GTNAC	3 cut(s)	1162, 1252, 1280
MalI	GATC	4 cut(s)	292, 489, 947, 1152
MboI	GATC	4 cut(s)	290, 487, 945, 1150
MboII	GAAGA	9 cut(s)	19, 236, 335, 361, 557, 560, 587, 715, 753
MflI	RGATCY	3 cut(s)	290, 487, 945
MhlI	GDGCHC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	1103
MmeI	TCCRAC	1 cut(s)	465
Mph1103I	ATGCAT	1 cut(s)	1204
MseI	TTAA	5 cut(s)	5, 51, 629, 773, 1224
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	2 cut(s)	1038, 1267
MspR9I	CCNGG	3 cut(s)	643, 1039, 1268
MvaI	CCWGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	3 cut(s)	67, 305, 1138
NciI	CCSGG	2 cut(s)	1039, 1268
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	923
NdeII	GATC	4 cut(s)	290, 487, 945, 1150
NlaIII	CATG	6 cut(s)	13, 262, 313, 568, 1198, 1206
NlaIV	GGNNCC	2 cut(s)	292, 489
NmuCI	GTSAC	2 cut(s)	1252, 1280
NsiI	ATGCAT	1 cut(s)	1204
NspI	RCATGY	3 cut(s)	262, 568, 1206
PfeI	GAWTC	3 cut(s)	440, 901, 1183
PflMI	CCANNNNNTGG	2 cut(s)	170, 924
PfoI	TCCNGGA	1 cut(s)	1266
PkrI	GCNGC	7 cut(s)	69, 77, 148, 151, 301, 721, 861
PleI	GAGTC	1 cut(s)	1102
PpsI	GAGTC	1 cut(s)	1102
PshBI	ATTAAT	1 cut(s)	629
PsiI	TTATAA	1 cut(s)	1011
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	2 cut(s)	292, 489
PspPI	GGNCC	1 cut(s)	645
PsuI	RGATCY	3 cut(s)	290, 487, 945
RsaI	GTAC	2 cut(s)	480, 711
RsaNI	GTAC	2 cut(s)	479, 710
RseI	CAYNNNNRTG	1 cut(s)	669
SalI	GTCGAC	1 cut(s)	106
SaqAI	TTAA	5 cut(s)	5, 51, 629, 773, 1224
SatI	GCNGC	7 cut(s)	68, 76, 147, 150, 300, 720, 860
Sau3AI	GATC	4 cut(s)	290, 487, 945, 1150
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	1 cut(s)	1103
ScrFI	CCNGG	3 cut(s)	643, 1039, 1268
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	3 cut(s)	482, 669, 1189
SinI	GGWCC	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	3 cut(s)	495, 800, 1142
SmoI	CTYRAG	3 cut(s)	495, 800, 1142
SspI	AATATT	1 cut(s)	1027
SspMI	CTAG	1 cut(s)	1285
StyD4I	CCNGG	3 cut(s)	641, 1037, 1266
StyI	CCWWGG	2 cut(s)	309, 648
TaaI	ACNGT	4 cut(s)	483, 581, 709, 726
TaqI	TCGA	2 cut(s)	107, 219
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	3 cut(s)	78, 149, 862
TfiI	GAWTC	3 cut(s)	440, 901, 1183
Tru1I	TTAA	5 cut(s)	5, 51, 629, 773, 1224
Tru9I	TTAA	5 cut(s)	5, 51, 629, 773, 1224
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	2 cut(s)	1252, 1280
TseI	GCWGC	4 cut(s)	67, 149, 299, 719
Tsp45I	GTSAC	2 cut(s)	1252, 1280
TspDTI	ATGAA	7 cut(s)	76, 588, 783, 785, 900, 946, 1162
TspRI	CASTG	1 cut(s)	120
Van91I	CCANNNNNTGG	2 cut(s)	170, 924
VpaK11BI	GGWCC	1 cut(s)	645
VspI	ATTAAT	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	4 cut(s)	335, 614, 1119, 1226
XceI	RCATGY	3 cut(s)	262, 568, 1206
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	1 cut(s)	1285
Zsp2I	ATGCAT	1 cut(s)	1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.