Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004997

Physical Location & Seq

Genomic Coordinates Forward (+)

224863 .. 233106

Gene Structure 8244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G002100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTCCTCCATGGTCTTATGCAAAAACTTTATCTTTAATAACCCGAAGCTGCGGCGGAGCTCCTTTTATCTGCACAGAAATTCGTCGACATTAGTGGCTCAACTGGGCGACACAAGACGGAGGTTTGCCGCCGGGTTCATCCCAAATGCCGGGAAACGAAAAAGGGAAAGGAGCTGGTGGCAGAGATTCTTTTTCGACGAGGATGGCAATTGGCTTGGTTTGAAGGAGGATGACATGCTGGTGGAGGCGGAGGATGACTTGGAGATGGACGGCTCTGATGAAGGTGAGAAATTTGAGGCGTGGAAGACGAGGGCTGAAGCAATCGTGGAGCTGAGGGAAGCACAGCAAGATATGACGAACGAGGAGAATCGCAAGTGGGAGGACTGGCTTGCGGATTCTAATTCTACTTCCTGGGAAGCTGTGCAGTCGGATCCTACTCAAGAAAAGGGCTTGCTTTACTCTCTCACTGATTTCGTTCTTAGAAAGGAAGATGACGACGACGACGACATGCTCTATGAAGACCGTGTTTTCCGCTATGCCTCACTCAATTCGGCTAAATTTTTGGCGGTGTTAATAATTATACCCTGGGCCTTGGATTTTGTGGTTCACGACTATCTTCTGATGCCTTTTTTAGACAGATATGTGAAGACTGTACCACTTGCTGCAGAAATGCTTGACGTCAGAAGAAATCAAAAGCTTCAAATGGTTGAGGAATTAAAAATTGAGAGAGCAAGATTTCATTTTGAGATGGAAATTGGTAAATCTCCACCGCTTTCTGATGAGGAGGTTTGGTGGGAATTGAGGCATAAGGCATTAGAGCTAAGAGATGAATGGAGATTAGAGAATCGTAAAGCATTTGCCAACATATGGTCAGATATGATATTCGGGGTCTCGTTATTCATTCTTTTATACTGCAATCAGAGTAAAGTAGCTTTGCTGAAATTTACAGGTTATAAGATAATAAATAATATTTCAGATACCGGGAAGGCATTTCTTATTATACTTATCACAGATATTTTTTTAGGGTATCATTCTGAGTCTGGTTGGCAGACGTTGTTAGAAATTTTTGTTGAGCATTACGGGATTGATGTTGATCAGTCTGCCATAACCATTTTTATCTGCCTGATTCCAGTTGTCATTGATGCATGTGTGAAACTTTGGGAATCTACTACACTAGTCTTGTTAAATTACCACATATTTGGTATTCCCTCTCTGAGCTCAGCAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CemA

Protein Analysis

411

Amino Acids

47.99

Weight (kDa)

4.89

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31040
fragaria_vesca	FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180 FvH4_4g00180
malus_domestica	MD04G1001800.v1.1 MD10G1290500.v1.1
prunus_persica	Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1 Prupe.1G002100_v2.0.a1
pyrus_communis	pycom04g00240 pycom420g00290
rosa_chinensis	RchiOBHm_Chr4g0384781
rosa_laevigata	RLG00000010270
rosa_multiflora	Rmu_co8178212.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332850
rosa_rugosa	Rorug03G0297600 Rorug03G0297600
rosa_samantha	Rh4AG001400 Rh4BG001200 Rh4CG001100 Rh4DG001200
rosa_wichuraiana	Rw0G012830 Rw0G021960 Rw4G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AatII	GACGTC	1 cut(s)	681
AccB7I	CCANNNNNTGG	1 cut(s)	867
AccI	GTMKAC	1 cut(s)	86
AciI	CCGC	8 cut(s)	52, 55, 129, 248, 392, 532, 566, 770
AclWI	GGATC	2 cut(s)	425, 438
AcsI	RAATTY	5 cut(s)	79, 290, 557, 941, 1062
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	678
AfaI	GTAC	1 cut(s)	654
AfiI	CCNNNNNNNGG	2 cut(s)	149, 867
AgsI	TTSAA	2 cut(s)	223, 701
AhlI	ACTAGT	1 cut(s)	1174
AjnI	CCWGG	2 cut(s)	410, 584
AluBI	AGCT	9 cut(s)	49, 60, 174, 331, 419, 697, 820, 932, 1218
AluI	AGCT	9 cut(s)	49, 60, 174, 331, 419, 697, 820, 932, 1218
Alw21I	GWGCWC	2 cut(s)	62, 1220
Alw26I	GTCTC	1 cut(s)	895
AlwI	GGATC	2 cut(s)	425, 438
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	49, 662
ApoI	RAATTY	5 cut(s)	79, 290, 557, 941, 1062
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	3 cut(s)	133, 151, 982
AsuHPI	GGTGA	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	430
BanII	GRGCYC	2 cut(s)	62, 1220
BbsI	GAAGAC	3 cut(s)	311, 525, 653
Bbv12I	GWGCWC	2 cut(s)	62, 1220
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	36, 649
BccI	CCATC	3 cut(s)	197, 259, 742
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	412, 586
BclI	TGATCA	1 cut(s)	1093
BcnI	CCSGG	3 cut(s)	133, 151, 982
BcoDI	GTCTC	1 cut(s)	895
BcuI	ACTAGT	1 cut(s)	1174
BfaI	CTAG	1 cut(s)	1175
BfmI	CTRYAG	1 cut(s)	663
BisI	GCNGC	4 cut(s)	50, 53, 129, 663
BlpI	GCTNAGC	1 cut(s)	1219
BlsI	GCNGC	4 cut(s)	51, 54, 130, 664
Bme1390I	CCNGG	5 cut(s)	133, 151, 412, 586, 982
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	5 cut(s)	133, 151, 412, 586, 982
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	612, 1132
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	3 cut(s)	311, 525, 653
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	1219
BpuEI	CTTGAG	1 cut(s)	423
BpuMI	CCSGG	3 cut(s)	133, 151, 982
BsaBI	GATNNNNATC	1 cut(s)	1092
BsaHI	GRCGYC	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	895
BsaJI	CCNNGG	5 cut(s)	9, 411, 584, 585, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 867
Bse1I	ACTGG	3 cut(s)	108, 389, 1130
Bse8I	GATNNNNATC	1 cut(s)	1092
BseBI	CCWGG	2 cut(s)	412, 586
BseDI	CCNNGG	5 cut(s)	9, 411, 584, 585, 591
BseGI	GGATG	4 cut(s)	138, 208, 235, 259
BseJI	GATNNNNATC	1 cut(s)	1092
BseLI	CCNNNNNNNGG	2 cut(s)	149, 867
BseMII	CTCAG	4 cut(s)	323, 1026, 1205, 1233
BseNI	ACTGG	3 cut(s)	108, 389, 1130
BseRI	GAGGAG	2 cut(s)	377, 797
BseXI	GCAGC	2 cut(s)	36, 649
BsgI	GTGCAG	2 cut(s)	56, 443
BshFI	GGCC	1 cut(s)	590
BsiHKAI	GWGCWC	2 cut(s)	62, 1220
BsiSI	CCGG	3 cut(s)	132, 150, 981
BslI	CCNNNNNNNGG	2 cut(s)	149, 867
BsmAI	GTCTC	1 cut(s)	895
BsnI	GGCC	1 cut(s)	590
Bso31I	GGTCTC	1 cut(s)	895
Bsp1286I	GDGCHC	2 cut(s)	62, 1220
Bsp143I	GATC	2 cut(s)	430, 1093
Bsp1720I	GCTNAGC	1 cut(s)	1219
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	8 cut(s)	52, 55, 129, 248, 392, 532, 566, 770
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	4 cut(s)	324, 1027, 1206, 1232
BspLI	GGNNCC	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	2 cut(s)	425, 438
BspTNI	GGTCTC	1 cut(s)	895
BsrI	ACTGG	3 cut(s)	108, 389, 1130
BssECI	CCNNGG	5 cut(s)	9, 411, 584, 585, 591
BssMI	GATC	2 cut(s)	430, 1093
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	2 cut(s)	9, 591
Bst2UI	CCWGG	2 cut(s)	412, 586
Bst4CI	ACNGT	2 cut(s)	524, 652
BstACI	GRCGYC	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	390, 452
BstDEI	CTNAG	7 cut(s)	332, 479, 821, 1035, 1214, 1219, 1227
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	138, 208, 235, 259
BstKTI	GATC	2 cut(s)	433, 1096
BstMAI	GTCTC	1 cut(s)	895
BstMBI	GATC	2 cut(s)	430, 1093
BstNI	CCWGG	2 cut(s)	412, 586
BstNSI	RCATGY	3 cut(s)	238, 511, 1149
BstSCI	CCNGG	5 cut(s)	131, 149, 410, 584, 980
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	2 cut(s)	36, 649
BstV2I	GAAGAC	3 cut(s)	311, 525, 653
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	1199
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	590
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	138, 208, 235, 259
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	390, 452
Cfr13I	GGNCC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	4 cut(s)	10, 235, 508, 1146
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	7 cut(s)	332, 479, 821, 1035, 1214, 1219, 1227
DpnI	GATC	2 cut(s)	432, 1095
DpnII	GATC	2 cut(s)	430, 1093
EciI	GGCGGA	2 cut(s)	70, 263
Ecl136II	GAGCTC	2 cut(s)	60, 1218
Eco130I	CCWWGG	2 cut(s)	9, 591
Eco24I	GRGCYC	2 cut(s)	62, 1220
Eco31I	GGTCTC	1 cut(s)	895
Eco53kI	GAGCTC	2 cut(s)	60, 1218
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	2 cut(s)	60, 1218
EcoRII	CCWGG	2 cut(s)	410, 584
EcoT14I	CCWWGG	2 cut(s)	9, 591
EcoT22I	ATGCAT	1 cut(s)	1147
EcoT38I	GRGCYC	2 cut(s)	62, 1220
ErhI	CCWWGG	2 cut(s)	9, 591
FaeI	CATG	4 cut(s)	13, 238, 511, 1149
FatI	CATG	4 cut(s)	9, 234, 507, 1145
FauNDI	CATATG	1 cut(s)	866
FbaI	TGATCA	1 cut(s)	1093
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	50, 53, 129, 663
FokI	GGATG	4 cut(s)	125, 215, 242, 266
FriOI	GRGCYC	2 cut(s)	62, 1220
Fsp4HI	GCNGC	4 cut(s)	50, 53, 129, 663
FspBI	CTAG	1 cut(s)	1175
GluI	GCNGC	4 cut(s)	50, 53, 129, 663
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	3 cut(s)	132, 150, 981
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	4 cut(s)	13, 238, 511, 1149
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	7 cut(s)	186, 367, 395, 844, 1037, 1126, 1163
HpaII	CCGG	3 cut(s)	132, 150, 981
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	87, 607
Hpy188III	TCNNGA	2 cut(s)	440, 608
Hpy8I	GTNNAC	2 cut(s)	87, 607
Hpy99I	CGWCG	5 cut(s)	88, 200, 500, 503, 506
HpyAV	CCTTC	3 cut(s)	217, 275, 979
HpyCH4III	ACNGT	2 cut(s)	524, 652
HpyCH4IV	ACGT	2 cut(s)	678, 1052
HpyCH4V	TGCA	6 cut(s)	21, 73, 424, 665, 915, 1145
HpyF3I	CTNAG	7 cut(s)	332, 479, 821, 1035, 1214, 1219, 1227
HpySE526I	ACGT	2 cut(s)	678, 1052
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	4 cut(s)	13, 238, 511, 1149
Ksp22I	TGATCA	1 cut(s)	1093
Kzo9I	GATC	2 cut(s)	430, 1093
LmnI	GCTCC	4 cut(s)	57, 65, 171, 328
Lsp1109I	GCAGC	2 cut(s)	36, 649
LweI	GCATC	2 cut(s)	612, 1132
MaeI	CTAG	1 cut(s)	1175
MaeII	ACGT	2 cut(s)	678, 1052
MalI	GATC	2 cut(s)	432, 1095
MboI	GATC	2 cut(s)	430, 1093
MboII	GAAGA	6 cut(s)	316, 500, 530, 608, 658, 696
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	2 cut(s)	62, 1220
MlyI	GAGTC	1 cut(s)	1046
MmeI	TCCRAC	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	1147
MseI	TTAA	4 cut(s)	36, 572, 716, 1184
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	3 cut(s)	132, 150, 981
MspR9I	CCNGG	5 cut(s)	133, 151, 412, 586, 982
MunI	CAATTG	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	412, 586
NciI	CCSGG	3 cut(s)	133, 151, 982
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	2 cut(s)	430, 1093
NlaIII	CATG	4 cut(s)	13, 238, 511, 1149
NlaIV	GGNNCC	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	1147
NspI	RCATGY	3 cut(s)	238, 511, 1149
PasI	CCCWGGG	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PfeI	GAWTC	6 cut(s)	186, 367, 395, 844, 1126, 1163
PflMI	CCANNNNNTGG	1 cut(s)	867
PkrI	GCNGC	4 cut(s)	51, 54, 130, 664
PleI	GAGTC	1 cut(s)	1045
PpsI	GAGTC	1 cut(s)	1045
PsiI	TTATAA	1 cut(s)	954
Psp124BI	GAGCTC	2 cut(s)	62, 1220
Psp6I	CCWGG	2 cut(s)	410, 584
PspGI	CCWGG	2 cut(s)	410, 584
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	588
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	2 cut(s)	62, 1220
SalI	GTCGAC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	36, 572, 716, 1184
SatI	GCNGC	4 cut(s)	50, 53, 129, 663
Sau3AI	GATC	2 cut(s)	430, 1093
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	1 cut(s)	1046
ScrFI	CCNGG	5 cut(s)	133, 151, 412, 586, 982
SduI	GDGCHC	2 cut(s)	62, 1220
SfaNI	GCATC	2 cut(s)	612, 1132
SfcI	CTRYAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
SpeI	ACTAGT	1 cut(s)	1174
SsiI	CCGC	8 cut(s)	52, 55, 129, 248, 392, 532, 566, 770
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	1 cut(s)	1175
SstI	GAGCTC	2 cut(s)	62, 1220
StyD4I	CCNGG	5 cut(s)	131, 149, 410, 584, 980
StyI	CCWWGG	2 cut(s)	9, 591
TaaI	ACNGT	2 cut(s)	524, 652
TaiI	ACGT	2 cut(s)	681, 1055
TaqI	TCGA	2 cut(s)	86, 195
TauI	GCSGC	2 cut(s)	55, 131
TfiI	GAWTC	6 cut(s)	186, 367, 395, 844, 1126, 1163
Tru1I	TTAA	4 cut(s)	36, 572, 716, 1184
Tru9I	TTAA	4 cut(s)	36, 572, 716, 1184
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	2 cut(s)	49, 662
TspDTI	ATGAA	6 cut(s)	127, 294, 531, 728, 843, 889
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	867
XapI	RAATTY	5 cut(s)	79, 290, 557, 941, 1062
XceI	RCATGY	3 cut(s)	238, 511, 1149
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	1175
ZraI	GACGTC	1 cut(s)	679
Zsp2I	ATGCAT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.