Rorug03G0297800

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005296
Physical Location & Seq
Forward (+)
30788275 .. 30791544
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0297800.1

Sequence Viewer

Length: 627 bp
ATGAGGAGAATCTTTGTACTTTTGTTTGATCATTTAATGGCTCATTGGGGTCACCATGTCTGCCATATCACCTCAGGGATATATGTCGGTGAGGGAAAGGTTATCCACTTCACTCGGGCAGCTGTGTCATCCCATTCTTCAGAGAATCCCTGCACGACTTGCGGTGATCCATCAAGGCATGGTGGTGGTGTCATGTCTTGCCTAGATTGTTTTCTGTCTGGTGATGATCTTTACCTCTTTGAGTATGGTGTCACTAAAGCCTTGTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCTTCGTCTGATCCATCTGAACATGTCCTTCTCCGTGCAAAGTACCTTCTCAAGAATGGTTTTGGCAGCTACAGCCTTTTCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGCAGCACTGGTTTGGGAAGGAGTGGGCAGGCATCCACCGCTTTCGCTTTTGTATTGGGTGGTCTTGGTCTGGGTGGTATTGTCGGTTATTGTCTCTATCGGGTGGCTTTTGATATTGGATTCCGCAGTGATGTTTCAAAAGTGCCAGTAGAGGAACTCTGGGACTATATGAATAAAAACCAGAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

208

Amino Acids

22.67

Weight (kDa)

8.35

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 26 - 143 2.3e-22 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AciI CCGC 3 cut(s) 162, 474, 559
AclWI GGATC 2 cut(s) 161, 305
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 4 cut(s) 18, 289, 295, 344
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 382, 573
AluBI AGCT 2 cut(s) 122, 369
AluI AGCT 2 cut(s) 122, 369
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 2 cut(s) 161, 305
Ama87I CYCGRG 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 119, 366, 438
Asp718I GGTACC 1 cut(s) 287
AsuHPI GGTGA 5 cut(s) 44, 61, 101, 176, 233
AvaI CYCGRG 1 cut(s) 114
AxyI CCTNAGG 1 cut(s) 73
BanI GGYRCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 131, 378, 450
BccI CCATC 2 cut(s) 178, 322
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 3 cut(s) 120, 367, 439
BlsI GCNGC 3 cut(s) 121, 368, 440
BmeT110I CYCGRG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 289
BmsI GCATC 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 448, 581
Bse21I CCTNAGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 128, 467
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 448, 581
BseRI GAGGAG 2 cut(s) 19, 297
BseXI GCAGC 3 cut(s) 131, 378, 450
BsgI GTGCAG 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 114
Bsp143I GATC 4 cut(s) 28, 166, 226, 310
BspACI CCGC 3 cut(s) 162, 474, 559
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 2 cut(s) 161, 305
BspT107I GGYRCC 1 cut(s) 287
BsrI ACTGG 2 cut(s) 448, 581
BssMI GATC 4 cut(s) 28, 166, 226, 310
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 128, 467
BstKTI GATC 4 cut(s) 31, 169, 229, 313
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 4 cut(s) 28, 166, 226, 310
BstMWI GCNNNNNNNGC 3 cut(s) 159, 372, 473
BstNSI RCATGY 1 cut(s) 326
BstPI GGTNACC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 3 cut(s) 131, 378, 450
BstV2I GAAGAC 1 cut(s) 402
Bsu36I CCTNAGG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 128, 467
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 441, 568
Cac8I GCNNGC 1 cut(s) 465
Csp6I GTAC 4 cut(s) 17, 288, 294, 343
CviAII CATG 4 cut(s) 56, 179, 193, 323
CviJI RGCY 7 cut(s) 41, 122, 260, 278, 369, 375, 542
CviKI_1 RGCY 7 cut(s) 41, 122, 260, 278, 369, 375, 542
CviQI GTAC 4 cut(s) 17, 288, 294, 343
DdeI CTNAG 1 cut(s) 73
DpnI GATC 4 cut(s) 30, 168, 228, 312
DpnII GATC 4 cut(s) 28, 166, 226, 310
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
FaeI CATG 4 cut(s) 59, 182, 196, 326
FaqI GGGAC 1 cut(s) 611
FatI CATG 4 cut(s) 55, 178, 192, 322
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 120, 367, 439
FokI GGATG 2 cut(s) 115, 454
Fsp4HI GCNGC 3 cut(s) 120, 367, 439
FspBI CTAG 1 cut(s) 203
GluI GCNGC 3 cut(s) 120, 367, 439
Hin1II CATG 4 cut(s) 59, 182, 196, 326
HinfI GANTC 3 cut(s) 9, 145, 555
HphI GGTGA 5 cut(s) 44, 61, 101, 176, 233
Hpy188I TCNGA 3 cut(s) 142, 310, 319
Hpy188III TCNNGA 1 cut(s) 352
HpyAV CCTTC 3 cut(s) 338, 356, 447
HpyCH4V TGCA 4 cut(s) 153, 338, 404, 414
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 372, 473
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 4 cut(s) 59, 182, 196, 326
KpnI GGTACC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 4 cut(s) 28, 166, 226, 310
Lsp1109I GCAGC 3 cut(s) 131, 378, 450
LweI GCATC 1 cut(s) 476
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 50, 250
MalI GATC 4 cut(s) 30, 168, 228, 312
MboI GATC 4 cut(s) 28, 166, 226, 310
MboII GAAGA 2 cut(s) 129, 407
MfeI CAATTG 1 cut(s) 388
MluCI AATT 2 cut(s) 388, 405
MnlI CCTC 6 cut(s) 82, 85, 245, 275, 278, 580
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 122
MunI CAATTG 1 cut(s) 388
MwoI GCNNNNNNNGC 3 cut(s) 159, 372, 473
NdeII GATC 4 cut(s) 28, 166, 226, 310
NlaIII CATG 4 cut(s) 59, 182, 196, 326
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 50, 250
NspI RCATGY 1 cut(s) 326
PciI ACATGT 1 cut(s) 322
PfeI GAWTC 3 cut(s) 9, 145, 555
PkrI GCNGC 3 cut(s) 121, 368, 440
PscI ACATGT 1 cut(s) 322
PspEI GGTNACC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 4 cut(s) 18, 289, 295, 344
RsaNI GTAC 4 cut(s) 17, 288, 294, 343
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 3 cut(s) 120, 367, 439
Sau3AI GATC 4 cut(s) 28, 166, 226, 310
SetI ASST 9 cut(s) 74, 102, 124, 237, 289, 293, 348, 371, 424
SfaNI GCATC 1 cut(s) 476
SfcI CTRYAG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 2 cut(s) 388, 405
SsiI CCGC 3 cut(s) 162, 474, 559
SspMI CTAG 1 cut(s) 203
TasI AATT 2 cut(s) 388, 405
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 3 cut(s) 9, 145, 555
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 2 cut(s) 448, 568
TseFI GTSAC 2 cut(s) 50, 250
TseI GCWGC 3 cut(s) 119, 366, 438
Tsp45I GTSAC 2 cut(s) 50, 250
TspDTI ATGAA 1 cut(s) 620
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 2 cut(s) 448, 568
XceI RCATGY 1 cut(s) 326
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.