RchiOBHm_Chr4g0384881

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005296
Physical Location & Seq
Forward (+)
252174 .. 254126
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35842

Sequence Viewer

Length: 645 bp
ATGGATCTATCTGCTTCTGGAATTAACCTCGACTCAATTAACCGGAAGGATTTTGTCACAGATTATGAGGAGGCAAAGTTCTTTATCATTAAGTCTTTCAGTGAGGATAATGTTCATAAAAGTATTAAATACAGTGTTTGGGCCAGCACTCCCCATGGAAACAAGAAGCTTGATGCTGCTTATCATGAGGCGAAGAGGATAAAAAGCAGCTGTCCAGTCCTTCTCTTATTTTCGGTTAATGCCAGTGGACAGTTTTGCGGAGTAGCCGAAATGATTGGACCATTAGACTTTGGAAAAGATGCTGATTACAGGCAGCAAGACAGGTGGAATGGCCAATTTAAAGTTCAGTGGCACATTATTAAGGATGTTCCTAACATTCGCTGCCGTCACATTCTACTTGAAAATAATGATAATAAGCCTGTCACTCACAGCCGAGACTGTCAGGAGGTGAATCTGAAACAAGGAATTGAGCTGTTGAAAATTTTCAATGATTATGATGCACGGACATCTATAGTTGATGATTTTGAATTTTATGATGACCGCGAAAGGTCCTTGAAGGAAAGGAAAGCCAGACAACAAGCTTGTGCAACTACAGATGCTTCTGAGTCAGTTGTTCTTGGTACTGTTAAGGAAGCTTCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

214

Amino Acids

24.48

Weight (kDa)

6.31

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 25 - 163 6.6e-49 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 543
AciI CCGC 2 cut(s) 258, 541
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 2 cut(s) 480, 527
AfaI GTAC 1 cut(s) 622
AgsI TTSAA 5 cut(s) 401, 478, 487, 527, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 5 cut(s) 169, 210, 472, 581, 635
AluI AGCT 5 cut(s) 169, 210, 472, 581, 635
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 141, 331
ApeKI GCWGC 4 cut(s) 176, 207, 313, 381
ApoI RAATTY 2 cut(s) 480, 527
Asp700I GAANNNNTTC 1 cut(s) 482
AspS9I GGNCC 3 cut(s) 141, 278, 549
AsuHPI GGTGA 1 cut(s) 460
AvaII GGWCC 2 cut(s) 278, 549
BalI TGGCCA 1 cut(s) 333
BbvI GCAGC 4 cut(s) 163, 219, 325, 368
BceAI ACGGC 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 429
BfmI CTRYAG 2 cut(s) 510, 591
BisI GCNGC 4 cut(s) 177, 208, 314, 382
BlsI GCNGC 4 cut(s) 178, 209, 315, 383
Bme18I GGWCC 2 cut(s) 278, 549
BmgT120I GGNCC 3 cut(s) 141, 278, 549
BmsI GCATC 4 cut(s) 163, 289, 487, 586
BsaJI CCNNGG 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 2 cut(s) 215, 243
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 2 cut(s) 215, 243
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 4 cut(s) 163, 219, 325, 368
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 2 cut(s) 143, 333
BsiSI CCGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 429
BsnI GGCC 2 cut(s) 143, 333
Bsp143I GATC 1 cut(s) 4
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 2 cut(s) 258, 541
BspANI GGCC 2 cut(s) 143, 333
BspCNI CTCAG 1 cut(s) 595
BspFNI CGCG 1 cut(s) 543
BspHI TCATGA 1 cut(s) 184
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 2 cut(s) 215, 243
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 154
Bst4CI ACNGT 4 cut(s) 134, 252, 440, 625
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 603, 639
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 543
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 4
BstSFI CTRYAG 2 cut(s) 510, 591
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 4 cut(s) 163, 219, 325, 368
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 143, 333
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 4 cut(s) 106, 139, 250, 353
Cac8I GCNNGC 1 cut(s) 145
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 3 cut(s) 141, 278, 549
Csp6I GTAC 1 cut(s) 621
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 2 cut(s) 155, 185
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 2 cut(s) 603, 639
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraI TTTAAA 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 278, 549
EcoO109I RGGNCCY 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 158, 188
FaiI YATR 7 cut(s) 66, 117, 156, 186, 495, 512, 534
FatI CATG 2 cut(s) 154, 184
Fnu4HI GCNGC 4 cut(s) 177, 208, 314, 382
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 4 cut(s) 177, 208, 314, 382
GluI GCNGC 4 cut(s) 177, 208, 314, 382
HaeIII GGCC 2 cut(s) 143, 333
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 158, 188
HindIII AAGCTT 3 cut(s) 167, 579, 633
HinfI GANTC 3 cut(s) 32, 451, 605
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 456, 604
Hpy188III TCNNGA 3 cut(s) 18, 185, 443
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 40, 230, 550
HpyCH4III ACNGT 4 cut(s) 134, 252, 440, 625
HpyCH4V TGCA 2 cut(s) 500, 587
HpyF3I CTNAG 2 cut(s) 603, 639
Hsp92II CATG 2 cut(s) 158, 188
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 4 cut(s) 163, 219, 325, 368
LweI GCATC 4 cut(s) 163, 289, 487, 586
MaeIII GTNAC 3 cut(s) 55, 386, 421
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 6 cut(s) 21, 36, 335, 465, 480, 527
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 2 cut(s) 26, 614
MnlI CCTC 7 cut(s) 38, 61, 64, 97, 181, 189, 439
Mox20I TGGCCA 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 482
MscI TGGCCA 1 cut(s) 333
MseI TTAA 8 cut(s) 24, 39, 90, 126, 237, 339, 360, 627
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 543
NcoI CCATGG 1 cut(s) 154
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 158, 188
NmeAIII GCCGAG 1 cut(s) 458
NmuCI GTSAC 3 cut(s) 55, 386, 421
PagI TCATGA 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 1 cut(s) 451
PkrI GCNGC 4 cut(s) 178, 209, 315, 383
PleI GAGTC 2 cut(s) 26, 613
PpsI GAGTC 2 cut(s) 26, 613
PpuMI RGGWCCY 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 549
PspPI GGNCC 3 cut(s) 141, 278, 549
PspPPI RGGWCCY 1 cut(s) 549
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 210
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SaqAI TTAA 8 cut(s) 24, 39, 90, 126, 237, 339, 360, 627
SatI GCNGC 4 cut(s) 177, 208, 314, 382
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 3 cut(s) 141, 278, 549
SchI GAGTC 2 cut(s) 26, 614
SetI ASST 9 cut(s) 30, 171, 212, 326, 450, 474, 551, 583, 637
SfaNI GCATC 4 cut(s) 163, 289, 487, 586
SfcI CTRYAG 2 cut(s) 510, 591
SinI GGWCC 2 cut(s) 278, 549
Sse9I AATT 6 cut(s) 21, 36, 335, 465, 480, 527
SsiI CCGC 2 cut(s) 258, 541
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 4 cut(s) 134, 252, 440, 625
TaqI TCGA 1 cut(s) 30
TasI AATT 6 cut(s) 21, 36, 335, 465, 480, 527
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 8 cut(s) 24, 39, 90, 126, 237, 339, 360, 627
Tru9I TTAA 8 cut(s) 24, 39, 90, 126, 237, 339, 360, 627
TscAI CASTG 4 cut(s) 106, 139, 250, 353
TseFI GTSAC 3 cut(s) 55, 386, 421
TseI GCWGC 4 cut(s) 176, 207, 313, 381
Tsp45I GTSAC 3 cut(s) 55, 386, 421
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 4 cut(s) 106, 139, 250, 353
VpaK11BI GGWCC 2 cut(s) 278, 549
XapI RAATTY 2 cut(s) 480, 527
XmnI GAANNNNTTC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.