Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003822.1

Orthogroup ID

OG0005296

Physical Location & Seq

Genomic Coordinates Reverse (-)

115505 .. 118574

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003822.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggatctatctgcttctggaattaacctcgactcaattaacaggaaggattttgtcacagattatgaggaggcaaagttctttatcattaagtctttcagtgaggataatgttcataaaagtattaaatacagtgtttgggccagcactccccatggaaacaagaagcttgatgctgcttatcatgaggcgaagaggataaaaagcagctgtccagtctttctcttattttcggttaatgccagtggacagttttgcggagtagccgaaatgattggaccagtagactttggaaaagatgctgattactggcagcaagacaggtggaatggccaatttaaagttcagtggcacattattaaggatgttcctaacgttcgcttccgtcacattctacttgaaaataatgataataagcctgtcactcacagccgagattgtcaggaggtgaatctgaaacaaggaattgagctgttgaaaattttcaatgattatgatgcacggacatctatagttgatgattttgaattttatgatgaccgcgaaaggtccttgaaggaaaggaaagccagacaacaagcttgtgcaactacagatgcttctgagtcagttgctcttgatactgttaaggaagcttctaatatttccgatcaagccttggagatgaaaggaagtagtagcaaagaatttgcaggaactgaacaagacagtagctccaaaacagattcagttgtatatgaacatgatgctgtacagcaaatatctgatagtttatctcaagtattgcagttggaagagagtgacaaagaggtactaccaccatctgaaagaggcgaacgtgaaggatttgattctgatggcatcatgagctgggttcaccccataaagcttaagaacatgaaggattcggcaatgaagcttctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

308

Amino Acids

34.98

Weight (kDa)

5.08

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58190 AT5G58190
fragaria_vesca	FvH4_4g00190 FvH4_4g00190 FvH4_4g00190 FvH4_4g00190
malus_domestica	MD04G1001900.v1.1 MD13G1285600.v1.1
prunus_persica	Prupe.1G002400_v2.0.a1
pyrus_communis	pycom04g00250 pycom420g00560
rosa_chinensis	RchiOBHm_Chr4g0384791 RchiOBHm_Chr4g0384881
rosa_laevigata	RLG00000010269
rosa_multiflora	Rmu_co8261087.1_g000001 Rmu_co8297957.1_g000001 Rmu_sc0003822.1_g000028 Rmu_ssc0000137.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332860
rosa_rugosa	Rorug03G0297600 Rorug03G0297700 Rorug03G0297800
rosa_samantha	Rh4AG001500 Rh4BG001300 Rh4CG001200 Rh4CG001800 Rh4DG001300
rosa_wichuraiana	Rw0G012840 Rw4G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	543
AciI	CCGC	2 cut(s)	258, 541
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	3 cut(s)	480, 527, 686
AfaI	GTAC	2 cut(s)	753, 813
AflII	CTTAAG	1 cut(s)	890
AgsI	TTSAA	5 cut(s)	401, 478, 487, 527, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	9 cut(s)	169, 210, 472, 581, 635, 714, 870, 889, 919
AluI	AGCT	9 cut(s)	169, 210, 472, 581, 635, 714, 870, 889, 919
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	2 cut(s)	141, 331
ApeKI	GCWGC	3 cut(s)	176, 207, 313
ApoI	RAATTY	3 cut(s)	480, 527, 686
Asp700I	GAANNNNTTC	1 cut(s)	482
AspS9I	GGNCC	3 cut(s)	141, 278, 549
AsuHPI	GGTGA	2 cut(s)	460, 869
AvaII	GGWCC	2 cut(s)	278, 549
BalI	TGGCCA	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	163, 219, 325
BccI	CCATC	2 cut(s)	829, 851
BfmI	CTRYAG	3 cut(s)	510, 591, 923
BfrI	CTTAAG	1 cut(s)	890
BisI	GCNGC	3 cut(s)	177, 208, 314
BlsI	GCNGC	3 cut(s)	178, 209, 315
Bme18I	GGWCC	2 cut(s)	278, 549
BmgT120I	GGNCC	3 cut(s)	141, 278, 549
BmsI	GCATC	6 cut(s)	163, 289, 487, 586, 736, 870
BpuEI	CTTGAG	1 cut(s)	762
BsaJI	CCNNGG	2 cut(s)	154, 657
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 698, 728
Bse1I	ACTGG	4 cut(s)	215, 243, 281, 314
Bse3DI	GCAATG	1 cut(s)	918
BseDI	CCNNGG	2 cut(s)	154, 657
BseGI	GGATG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	4 cut(s)	215, 243, 281, 314
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	163, 219, 325
BseYI	CCCAGC	1 cut(s)	870
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	143, 333
BsnI	GGCC	2 cut(s)	143, 333
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	2 cut(s)	4, 649
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	2 cut(s)	258, 541
BspANI	GGCC	2 cut(s)	143, 333
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	543
BspHI	TCATGA	2 cut(s)	184, 864
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	918
BsrGI	TGTACA	1 cut(s)	751
BsrI	ACTGG	4 cut(s)	215, 243, 281, 314
BssECI	CCNNGG	2 cut(s)	154, 657
BssMI	GATC	2 cut(s)	4, 649
BssT1I	CCWWGG	2 cut(s)	154, 657
Bst4CI	ACNGT	4 cut(s)	134, 252, 625, 710
Bst6I	CTCTTC	2 cut(s)	188, 789
BstAFI	CTTAAG	1 cut(s)	890
BstAUI	TGTACA	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	543
BstKTI	GATC	2 cut(s)	7, 652
BstMBI	GATC	2 cut(s)	4, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	867
BstSFI	CTRYAG	3 cut(s)	510, 591, 923
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	163, 219, 325
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	143, 333
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	4 cut(s)	106, 139, 250, 353
Cac8I	GCNNGC	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	2 cut(s)	184, 864
Cfr13I	GGNCC	3 cut(s)	141, 278, 549
Csp6I	GTAC	2 cut(s)	752, 812
CspCI	CAANNNNNGTGG	2 cut(s)	305, 340
CviAII	CATG	5 cut(s)	155, 185, 743, 865, 898
CviQI	GTAC	2 cut(s)	752, 812
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	2 cut(s)	6, 651
DpnII	GATC	2 cut(s)	4, 649
DraI	TTTAAA	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	188, 789
EarI	CTCTTC	2 cut(s)	188, 789
Eco130I	CCWWGG	2 cut(s)	154, 657
Eco47I	GGWCC	2 cut(s)	278, 549
EcoO109I	RGGNCCY	1 cut(s)	549
EcoT14I	CCWWGG	2 cut(s)	154, 657
ErhI	CCWWGG	2 cut(s)	154, 657
FaeI	CATG	5 cut(s)	158, 188, 746, 868, 901
FatI	CATG	5 cut(s)	154, 184, 742, 864, 897
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	177, 208, 314
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	3 cut(s)	177, 208, 314
GluI	GCNGC	3 cut(s)	177, 208, 314
GsaI	CCCAGC	1 cut(s)	874
HaeIII	GGCC	2 cut(s)	143, 333
Hin1II	CATG	5 cut(s)	158, 188, 746, 868, 901
HindIII	AAGCTT	5 cut(s)	167, 579, 633, 887, 917
HinfI	GANTC	6 cut(s)	32, 451, 605, 725, 851, 905
HphI	GGTGA	2 cut(s)	460, 869
Hpy166II	GTNNAC	3 cut(s)	248, 286, 877
Hpy188I	TCNGA	6 cut(s)	456, 604, 649, 766, 826, 856
Hpy188III	TCNNGA	5 cut(s)	18, 185, 443, 617, 865
Hpy8I	GTNNAC	3 cut(s)	248, 286, 877
HpyAV	CCTTC	4 cut(s)	40, 550, 836, 895
HpyCH4III	ACNGT	4 cut(s)	134, 252, 625, 710
HpyCH4IV	ACGT	2 cut(s)	375, 838
HpyCH4V	TGCA	4 cut(s)	500, 587, 692, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	867
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	2 cut(s)	375, 838
Hsp92II	CATG	5 cut(s)	158, 188, 746, 868, 901
Kzo9I	GATC	2 cut(s)	4, 649
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	3 cut(s)	163, 219, 325
LweI	GCATC	6 cut(s)	163, 289, 487, 586, 736, 870
MaeII	ACGT	2 cut(s)	375, 838
MaeIII	GTNAC	4 cut(s)	55, 386, 421, 800
MalI	GATC	2 cut(s)	6, 651
MboI	GATC	2 cut(s)	4, 649
MboII	GAAGA	2 cut(s)	205, 806
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	7 cut(s)	21, 36, 335, 465, 480, 527, 686
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	26, 614
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	9 cut(s)	38, 61, 64, 97, 181, 189, 439, 802, 824
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	9 cut(s)	24, 39, 90, 126, 237, 339, 360, 627, 891
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	890
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	867
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	4, 649
NlaIII	CATG	5 cut(s)	158, 188, 746, 868, 901
NmeAIII	GCCGAG	1 cut(s)	458
NmuCI	GTSAC	4 cut(s)	55, 386, 421, 800
PagI	TCATGA	2 cut(s)	184, 864
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	4 cut(s)	451, 725, 851, 905
PkrI	GCNGC	3 cut(s)	178, 209, 315
PleI	GAGTC	2 cut(s)	26, 613
PpsI	GAGTC	2 cut(s)	26, 613
PpuMI	RGGWCCY	1 cut(s)	549
Psp1406I	AACGTT	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	870
PspPI	GGNCC	3 cut(s)	141, 278, 549
PspPPI	RGGWCCY	1 cut(s)	549
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	2 cut(s)	753, 813
RsaNI	GTAC	2 cut(s)	752, 812
SaqAI	TTAA	9 cut(s)	24, 39, 90, 126, 237, 339, 360, 627, 891
SatI	GCNGC	3 cut(s)	177, 208, 314
Sau3AI	GATC	2 cut(s)	4, 649
Sau96I	GGNCC	3 cut(s)	141, 278, 549
SchI	GAGTC	2 cut(s)	26, 614
SfaNI	GCATC	6 cut(s)	163, 289, 487, 586, 736, 870
SfcI	CTRYAG	3 cut(s)	510, 591, 923
SinI	GGWCC	2 cut(s)	278, 549
SmlI	CTYRAG	2 cut(s)	777, 890
SmoI	CTYRAG	2 cut(s)	777, 890
Sse9I	AATT	7 cut(s)	21, 36, 335, 465, 480, 527, 686
SsiI	CCGC	2 cut(s)	258, 541
SspI	AATATT	1 cut(s)	643
StyI	CCWWGG	2 cut(s)	154, 657
TaaI	ACNGT	4 cut(s)	134, 252, 625, 710
TaiI	ACGT	2 cut(s)	378, 841
TaqI	TCGA	1 cut(s)	30
TasI	AATT	7 cut(s)	21, 36, 335, 465, 480, 527, 686
TatI	WGTACW	1 cut(s)	751
TfiI	GAWTC	4 cut(s)	451, 725, 851, 905
Tru1I	TTAA	9 cut(s)	24, 39, 90, 126, 237, 339, 360, 627, 891
Tru9I	TTAA	9 cut(s)	24, 39, 90, 126, 237, 339, 360, 627, 891
TscAI	CASTG	4 cut(s)	106, 139, 250, 353
TseFI	GTSAC	4 cut(s)	55, 386, 421, 800
TseI	GCWGC	3 cut(s)	176, 207, 313
Tsp45I	GTSAC	4 cut(s)	55, 386, 421, 800
TspDTI	ATGAA	4 cut(s)	104, 680, 753, 914
TspGWI	ACGGA	2 cut(s)	374, 517
TspRI	CASTG	4 cut(s)	106, 139, 250, 353
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	2 cut(s)	278, 549
XapI	RAATTY	3 cut(s)	480, 527, 686
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.