AT5G58210

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006684
Physical Location & Seq
Forward (+)
23552094 .. 23554402
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58210.2

Sequence Viewer

Length: 1143 bp
ATGATTCTGAAGCAGCTGAAACAATTTACCTTGTCTGCTACTCGCAGAAATGCTGTTTTCAAAACTGATGTTAAACGGCTTGCAAGGTTCTATGGCTCTCCTGCTGTTTGCGAATCTTTAACAACATCTAAAATTCCCAAAAGACTCTCAAAAGATGATCGGCGAGCTTTGGTGGAGTCCTTTGTCAACGAATACAGAGCAACTAATGCTGGTAGATTCCCTTCATTGGATGCTACTCACAAGCAAGTGGGAGGCTCTTATTACATTGTCAGGGACATCTTTCAAGAGCTGAAACTCAAACCAAAAGCACATATGCCAATCGTAGCTAAAGCCCTCTCAGAAGTCTCTTCTTCTGTACCAGGTGATGCTTCCTCACACTCCTCTCCAGCACCTGTGCCAACCGTTGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCAGCTGATGCTTCCTCACACTTGTCTCCATCACCTGTGCCAATCGTAGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCCGTACCAGCTGATACTTCCTCGCACTTCTCTCCAGCACCTGTGCCAATCGTAGAAGCAGAAGCCCTCTCAGTAGTCTCTCCTTCTGTACCAGCTGATACTTCCTCACACTTCTCTCCAGCACCTGTGCCAATCGTAGAAGCTAAAACCCTCTCAGAAGTCTCTCCCTCTGTACCAGATGATGCTTCCTCACACTTCTCTCCTGTGGTTGTTGAACCTGAGTTTCAAGCTGGCAGTGTGGATATTGAGATAGGAAGTGAGCAGAGGCCGGATATAATAGATACTTCTCACTCTAATTCTGATGATGAAAGTAATTTCCAGGGCAACAACCTTGTCATTACTGCAAAAGATGACAAAAGAGAAACAGAGGCAACTCAGGGAATAGAAAACTCGGAGACTGATGAAGAGAGGAACTTGACGCACTTAGGCAATCAAGAGTCAAAAGCAGACCATCTTGAAGGAGCTGATGTTTCAGCAGATGTTGTGCCTACTGAGACCAGACAAATTTCAGAGACAGGAGCCGGTGAGGTGAAAGAGACGGAAACTGGTGAGGTGAAAGAAAGGTCAAGTTCGTGGAGCAACATAATGTCATTTGCGAAAGAATTTGCGAACTTTTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

40.85

Weight (kDa)

4.99

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 50 - 98 1.6e-25 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 132, 1023, 1121
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 5 cut(s) 357, 441, 525, 609, 693
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 6 cut(s) 61, 284, 407, 734, 746, 977
AjnI CCWGG 2 cut(s) 358, 837
AlwNI CAGNNNCTG 3 cut(s) 392, 560, 644
AoxI GGCC 1 cut(s) 785
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 3 cut(s) 132, 1023, 1121
AsuHPI GGTGA 6 cut(s) 374, 465, 1055, 1060, 1079, 1084
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 478, 978
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 2 cut(s) 360, 839
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme1390I CCNGG 2 cut(s) 360, 839
BmiI GGNNCC 1 cut(s) 1039
BmrFI CCNGG 2 cut(s) 360, 839
BmsI GCATC 4 cut(s) 220, 355, 439, 691
BpmI CTGGAG 3 cut(s) 369, 537, 621
BsaI GGTCTC 1 cut(s) 1007
BsaJI CCNNGG 1 cut(s) 838
BsaXI ACNNNNNCTCC 2 cut(s) 972, 1002
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 1040
Bse1I ACTGG 1 cut(s) 1069
BseBI CCWGG 2 cut(s) 360, 839
BseDI CCNNGG 1 cut(s) 838
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 8 cut(s) 351, 435, 519, 603, 687, 729, 908, 1002
BseNI ACTGG 1 cut(s) 1069
BseRI GAGGAG 1 cut(s) 370
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 787
BsiSI CCGG 2 cut(s) 788, 1041
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 1049
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 787
Bso31I GGTCTC 1 cut(s) 1007
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 787
BspCNI CTCAG 8 cut(s) 350, 434, 518, 602, 686, 730, 907, 1003
BspLI GGNNCC 1 cut(s) 1039
BspTNI GGTCTC 1 cut(s) 1007
BsrFI RCCGGY 1 cut(s) 1040
BsrI ACTGG 1 cut(s) 1069
BssAI RCCGGY 1 cut(s) 1040
BssECI CCNNGG 1 cut(s) 838
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 360, 839
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 2 cut(s) 352, 918
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 81, 165, 751
BstDEI CTNAG 9 cut(s) 337, 421, 505, 589, 673, 738, 894, 943, 1011
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 360, 839
BstSCI CCNGG 2 cut(s) 358, 837
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 787
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 1 cut(s) 760
Cac8I GCNNGC 3 cut(s) 81, 165, 751
CaiI CAGNNNCTG 3 cut(s) 392, 560, 644
Cfr10I RCCGGY 1 cut(s) 1040
CseI GACGC 1 cut(s) 946
CsiI ACCWGGT 1 cut(s) 358
Csp6I GTAC 5 cut(s) 356, 440, 524, 608, 692
CviQI GTAC 5 cut(s) 356, 440, 524, 608, 692
DdeI CTNAG 9 cut(s) 337, 421, 505, 589, 673, 738, 894, 943, 1011
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 352, 918
EarI CTCTTC 2 cut(s) 352, 918
Eco31I GGTCTC 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 29
EcoRII CCWGG 2 cut(s) 358, 837
Esp3I CGTCTC 1 cut(s) 1049
FaiI YATR 5 cut(s) 93, 312, 314, 794, 1103
FaqI GGGAC 1 cut(s) 287
FauNDI CATATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
GsuI CTGGAG 3 cut(s) 369, 537, 621
HaeIII GGCC 1 cut(s) 787
HapII CCGG 2 cut(s) 788, 1041
HgaI GACGC 1 cut(s) 946
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 6 cut(s) 4, 113, 144, 176, 216, 956
HpaII CCGG 2 cut(s) 788, 1041
HphI GGTGA 6 cut(s) 374, 465, 1055, 1060, 1079, 1084
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 8 cut(s) 9, 340, 424, 508, 676, 820, 913, 1030
Hpy188III TCNNGA 3 cut(s) 284, 953, 974
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 5 cut(s) 231, 444, 528, 612, 971
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 83, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 9 cut(s) 337, 421, 505, 589, 673, 738, 894, 943, 1011
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 3 cut(s) 980, 1037, 1095
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 4 cut(s) 220, 355, 439, 691
MabI ACCWGGT 1 cut(s) 358
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 3 cut(s) 339, 342, 935
MluCI AATT 6 cut(s) 23, 132, 814, 832, 1023, 1121
MlyI GAGTC 3 cut(s) 138, 185, 965
MseI TTAA 2 cut(s) 72, 119
MspA1I CMGCKG 4 cut(s) 16, 446, 530, 614
MspI CCGG 2 cut(s) 788, 1041
MspR9I CCNGG 2 cut(s) 360, 839
MvaI CCWGG 2 cut(s) 360, 839
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeI CATATG 1 cut(s) 312
NdeII GATC 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 1039
PfeI GAWTC 3 cut(s) 4, 113, 216
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 3 cut(s) 138, 184, 964
PpsI GAGTC 3 cut(s) 138, 184, 964
Psp6I CCWGG 2 cut(s) 358, 837
PspGI CCWGG 2 cut(s) 358, 837
PspN4I GGNNCC 1 cut(s) 1039
PstNI CAGNNNCTG 3 cut(s) 392, 560, 644
PvuII CAGCTG 4 cut(s) 16, 446, 530, 614
RsaI GTAC 5 cut(s) 357, 441, 525, 609, 693
RsaNI GTAC 5 cut(s) 356, 440, 524, 608, 692
SaqAI TTAA 2 cut(s) 72, 119
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 3 cut(s) 138, 185, 965
ScrFI CCNGG 2 cut(s) 360, 839
SexAI ACCWGGT 1 cut(s) 358
SfaNI GCATC 4 cut(s) 220, 355, 439, 691
Sse9I AATT 6 cut(s) 23, 132, 814, 832, 1023, 1121
StyD4I CCNGG 2 cut(s) 358, 837
TaaI ACNGT 1 cut(s) 403
TasI AATT 6 cut(s) 23, 132, 814, 832, 1023, 1121
TfiI GAWTC 3 cut(s) 4, 113, 216
Tru1I TTAA 2 cut(s) 72, 119
Tru9I TTAA 2 cut(s) 72, 119
TscAI CASTG 1 cut(s) 760
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 213, 840, 936
TspGWI ACGGA 2 cut(s) 511, 1073
TspRI CASTG 1 cut(s) 760
XapI RAATTY 3 cut(s) 132, 1023, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.