Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006684

Physical Location & Seq

Genomic Coordinates Forward (+)

33592167 .. 33596961

Gene Structure 4795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCGCCCTCGTGTGGTGGGATTGAGCATTCGTTGGGACGAGAGGGAATAAGAGGAAGTGAGTCTTTGACTGAAGTTGGAGGTGTCATTGCTCAAACTGTTTCTGAGGCGGAGAATGACACAGATCTTAGTGTTGCCAGTGACAGGCGTTTAGAAGCTGAGGAAGAGTCCCAGATGTCTTCTTCAGTTGAGATTTTGTCCAAAGAAGTTATCACTCCAGGGAGAGGTTCTGATCTGGATGTCACACAAAGTAATATCTGGAAAGTGAATGCTGAGGAATCTTCATATATAGGCCCTGATATGGAGGAACTTAAGAAAACTCAATCCGTCTCTATTGCTCCAGGATGTGAGATGTTACAAGGAGGATTTGATGTTATTTCTCATTCACATGACAAATCTGAGGATGGTAAAAGGGAGGAAGCTCAGGCTGATCGACATGATTATGTCTCTAAAGAAAAACATCTACATATAGGGGAAACTAATACAGCCTCTCCAAGTTCTGATGATACGGAAGATATTACTAAACTGGATCTTGATGATTTAGAGTGTAAAATGAAGCAACATGATGAGACCCCTCCGGCTGATCGACTTGATTCCATTGCTGCAGAAAAACATCTACCAATAGAGGAAACTAATGGAGTCTCTTCAAGTTCTGATGATACAGAGGATGTTACTAAACCACATCTTGATGATTCAAAGTGTAAAATGGACCAGCATGAAGAGATCCCTCAGGCAGACAAACTATCCAAGCTGGCTGATGATGCAGAACCTCCAAAAAGATCAACAACTCTATGGGGTGCTATGAAATCGTTTGCGGATGGAATTATCAGTATTTTCAGACAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

30.82

Weight (kDa)

4.49

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58210 AT5G58210 AT5G58210 AT5G58210
fragaria_vesca	FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110
malus_domestica	MD10G1047400.v1.1
prunus_persica	Prupe.8G056400_v2.0.a1
pyrus_communis	pycom10g03350
rosa_chinensis	RchiOBHm_Chr7g0218101
rosa_laevigata	RLG00000002405
rosa_multiflora	Rmu_sc0000379.1_g000020
rosa_roxburghii	Rroxscaffold_3G00241320
rosa_rugosa	Rorug07G0174000 Rorug07G0174000 Rorug07G0174000
rosa_samantha	Rh2DG626300 Rh4BG100100 Rh7AG316400 Rh7BG307500 Rh7CG333400 Rh7DG315300
rosa_wichuraiana	Rw7G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 815
AclWI	GGATC	2 cut(s)	537, 718
AcuI	CTGAAG	2 cut(s)	93, 168
AfiI	CCNNNNNNNGG	4 cut(s)	14, 144, 224, 301
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	648, 696
AjnI	CCWGG	2 cut(s)	217, 340
AluBI	AGCT	3 cut(s)	158, 422, 751
AluI	AGCT	3 cut(s)	158, 422, 751
Alw26I	GTCTC	4 cut(s)	334, 451, 563, 646
AlwI	GGATC	2 cut(s)	537, 718
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	293, 709
AvaII	GGWCC	1 cut(s)	709
AxyI	CCTNAGG	1 cut(s)	729
BauI	CACGAG	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	171
BbvCI	CCTCAGC	2 cut(s)	159, 273
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	2 cut(s)	398, 812
BciT130I	CCWGG	2 cut(s)	219, 342
BcoDI	GTCTC	4 cut(s)	334, 451, 563, 646
BfmI	CTRYAG	1 cut(s)	603
BfrI	CTTAAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	219, 342
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	293, 709
BmrFI	CCNGG	2 cut(s)	219, 342
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	2 cut(s)	201, 324
Bpu10I	CCTNAGC	3 cut(s)	159, 273, 423
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 144, 224, 301
Bse1I	ACTGG	2 cut(s)	138, 531
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	2 cut(s)	87, 597
BseBI	CCWGG	2 cut(s)	219, 342
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	5 cut(s)	244, 350, 409, 673, 823
BseLI	CCNNNNNNNGG	4 cut(s)	14, 144, 224, 301
BseMI	GCAATG	2 cut(s)	87, 597
BseMII	CTCAG	6 cut(s)	96, 150, 264, 390, 437, 743
BseNI	ACTGG	2 cut(s)	138, 531
BseXI	GCAGC	1 cut(s)	589
BshFI	GGCC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	578
BslFI	GGGAC	2 cut(s)	51, 154
BslI	CCNNNNNNNGG	4 cut(s)	14, 144, 224, 301
BsmAI	GTCTC	4 cut(s)	334, 451, 563, 646
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	51, 154
BsmI	GAATGC	2 cut(s)	28, 274
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	563
Bsp143I	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
BspACI	CCGC	2 cut(s)	110, 815
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	6 cut(s)	97, 151, 265, 391, 436, 742
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	2 cut(s)	537, 718
BspTI	CTTAAG	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	563
BsrDI	GCAATG	2 cut(s)	87, 597
BsrI	ACTGG	2 cut(s)	138, 531
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	219, 342
Bst4CI	ACNGT	2 cut(s)	100, 846
Bst6I	CTCTTC	3 cut(s)	159, 649, 714
BstAFI	CTTAAG	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	7 cut(s)	105, 128, 159, 273, 399, 423, 729
BstF5I	GGATG	5 cut(s)	244, 350, 409, 673, 823
BstKTI	GATC	7 cut(s)	127, 235, 433, 532, 586, 726, 782
BstMAI	GTCTC	4 cut(s)	334, 451, 563, 646
BstMBI	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNI	CCWGG	2 cut(s)	219, 342
BstSCI	CCNGG	2 cut(s)	217, 340
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	3 cut(s)	124, 529, 723
BstYI	RGATCY	3 cut(s)	124, 529, 723
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	5 cut(s)	244, 350, 409, 673, 823
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	753
Cfr13I	GGNCC	2 cut(s)	293, 709
CviAII	CATG	4 cut(s)	389, 437, 563, 716
CviJI	RGCY	8 cut(s)	158, 294, 422, 428, 488, 581, 751, 755
CviKI_1	RGCY	8 cut(s)	158, 294, 422, 428, 488, 581, 751, 755
DdeI	CTNAG	7 cut(s)	105, 128, 159, 273, 399, 423, 729
DpnI	GATC	7 cut(s)	126, 234, 432, 531, 585, 725, 781
DpnII	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
Eam1104I	CTCTTC	3 cut(s)	159, 649, 714
EarI	CTCTTC	3 cut(s)	159, 649, 714
EciI	GGCGGA	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	709
Eco57I	CTGAAG	2 cut(s)	93, 168
Eco81I	CCTNAGG	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	217, 340
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	4 cut(s)	392, 440, 566, 719
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	2 cut(s)	51, 154
FatI	CATG	4 cut(s)	388, 436, 562, 715
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	5 cut(s)	251, 357, 416, 680, 830
Fsp4HI	GCNGC	1 cut(s)	603
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	201, 324
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	4 cut(s)	392, 440, 566, 719
HinfI	GANTC	6 cut(s)	62, 167, 278, 593, 639, 692
HpaII	CCGG	1 cut(s)	578
Hpy188I	TCNGA	6 cut(s)	106, 232, 400, 502, 655, 839
Hpy188III	TCNNGA	4 cut(s)	236, 259, 533, 686
HpyCH4III	ACNGT	2 cut(s)	100, 846
HpyCH4V	TGCA	2 cut(s)	605, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	7 cut(s)	105, 128, 159, 273, 399, 423, 729
Hsp92II	CATG	4 cut(s)	392, 440, 566, 719
Kzo9I	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	1 cut(s)	751
MaeIII	GTNAC	4 cut(s)	140, 241, 354, 670
MalI	GATC	7 cut(s)	126, 234, 432, 531, 585, 725, 781
MboI	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
MboII	GAAGA	7 cut(s)	171, 174, 176, 273, 524, 636, 731
MflI	RGATCY	3 cut(s)	124, 529, 723
MluCI	AATT	1 cut(s)	822
MlyI	GAGTC	3 cut(s)	71, 176, 648
MmeI	TCCRAC	1 cut(s)	58
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	3 cut(s)	387, 441, 687
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	2 cut(s)	219, 342
Mva1269I	GAATGC	2 cut(s)	28, 274
MvaI	CCWGG	2 cut(s)	219, 342
MwoI	GCNNNNNNNGC	1 cut(s)	761
NdeII	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
NlaIII	CATG	4 cut(s)	392, 440, 566, 719
NmuCI	GTSAC	2 cut(s)	140, 241
PctI	GAATGC	2 cut(s)	28, 274
PfeI	GAWTC	3 cut(s)	278, 593, 692
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	3 cut(s)	70, 175, 647
PpsI	GAGTC	3 cut(s)	70, 175, 647
Psp6I	CCWGG	2 cut(s)	217, 340
PspGI	CCWGG	2 cut(s)	217, 340
PspPI	GGNCC	2 cut(s)	293, 709
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	3 cut(s)	124, 529, 723
RseI	CAYNNNNRTG	3 cut(s)	387, 441, 687
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	7 cut(s)	124, 232, 430, 529, 583, 723, 779
Sau96I	GGNCC	2 cut(s)	293, 709
SchI	GAGTC	3 cut(s)	71, 176, 648
ScrFI	CCNGG	2 cut(s)	219, 342
SetI	ASST	6 cut(s)	85, 160, 229, 424, 753, 772
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	3 cut(s)	387, 441, 687
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	822
SsiI	CCGC	2 cut(s)	110, 815
StyD4I	CCNGG	2 cut(s)	217, 340
TaaI	ACNGT	2 cut(s)	100, 846
TaqI	TCGA	2 cut(s)	433, 586
TasI	AATT	1 cut(s)	822
TfiI	GAWTC	3 cut(s)	278, 593, 692
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	2 cut(s)	140, 241
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	2 cut(s)	140, 241
TspDTI	ATGAA	4 cut(s)	273, 569, 732, 818
TspGWI	ACGGA	2 cut(s)	316, 524
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.