Rw7G026790

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006684
Physical Location & Seq
Reverse (-)
34102095 .. 34107791
5697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026790.1

Sequence Viewer

Length: 1011 bp
ATGAGTATACAGAGCATGTTACGAAGAGGCCTCACTTTCAATCACCTCCCCAAATCCGTACGACCAAGTGGGCTGCGAGGAAGAAGGCCCTATGCTAACAATGCCGCCGCCGCCGAGGAACCAAACCCAGATGGCAACAAAGTCCGTGGAAGGAGGCTTAGCAAGAAGGAGCTCAAAGCCCTTGTGGAATCATTTGTCCACGAGTACAGAGCAATGAATGCGGGGAAATTCCCTCCCTTTAAGTATACTCAGAGACAAGTGGGTGGCAGTTACTATAGAATTAGGGGGATCCTCCAGGAGCTACACTACACGGCTAAGATGTCGCCCTCGTGTGGTGGGATTGAGCATTCGTTGGGACGAGAGGGAATAAGAGGAAGTGAGTCTTTGACTGAAGTCGGAGGTGTCATTGCTCAAACTGTTTCTGAGGCGGAAAATGACACAGATCTTAGTGTTGCCAGTGACGGGTGTTTAGAAGCTGAGGAAGAGTCCCAGATGTCCTCCTCAGTTGAGATTTTGTCCGAAGAAGTTATCACTCCAGGGAGAGGTTCTGATCTGGATGTCACACAAAGTAATATCTGGAAAGTGAATGCTGAGGAATCTTCATATATAGGCTCTGATATGGAGGAACTTAAGCAAACTCAATCTGTCTCTATTGCTCCAGGATGTGAGATGTTACAAGGAGGATTTGATGTTATTTCTCATTCACTTGACAAATCTGAGGATGGTAAAAGGGAGGAAGCTCAGGCTGATCGACATGATTATGTCTCTAAAGAAAAGCATCTACATATAGGGGAAACTAATAGAGCCTCTCCAAGTTCTGGTAATACTGTTGTTACTAAATCAGATCTTGATGTTTCAAAGTCTATAGTGGAGCAACATGAAGAGATTCCTCAGGCAGACAAACTATCCAAGCTGGCTGATGATGCAGAACCTCCAAAAAGATCAACAACTCTATGGGGTGCTATGAAATCGTTTGCGGATGGAATTATCAGTATTTTCAGACAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

36.87

Weight (kDa)

5.51

Isoelectric Point (pI)

61.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 54 - 103 1.7e-22 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 818
AccI GTMKAC 2 cut(s) 7, 245
AciI CCGC 6 cut(s) 105, 108, 111, 221, 428, 977
AclWI GGATC 2 cut(s) 283, 296
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 60, 206
AfiI CCNNNNNNNGG 4 cut(s) 332, 462, 542, 818
AflII CTTAAG 1 cut(s) 629
AgsI TTSAA 2 cut(s) 40, 858
AjnI CCWGG 3 cut(s) 294, 535, 658
AluBI AGCT 5 cut(s) 172, 301, 476, 740, 913
AluI AGCT 5 cut(s) 172, 301, 476, 740, 913
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 3 cut(s) 247, 652, 769
AlwI GGATC 2 cut(s) 283, 296
AoxI GGCC 2 cut(s) 28, 86
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 885
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 891
BamHI GGATCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 2 cut(s) 200, 328
Bbv12I GWGCWC 1 cut(s) 174
BbvCI CCTCAGC 2 cut(s) 477, 591
BbvI GCAGC 1 cut(s) 60
BccI CCATC 3 cut(s) 125, 716, 974
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 3 cut(s) 296, 537, 660
BcoDI GTCTC 3 cut(s) 247, 652, 769
BfmI CTRYAG 2 cut(s) 274, 864
BfrI CTTAAG 1 cut(s) 629
BglII AGATCT 2 cut(s) 442, 844
BisI GCNGC 4 cut(s) 74, 105, 108, 111
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 4 cut(s) 75, 106, 109, 112
Bme1390I CCNGG 3 cut(s) 296, 537, 660
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 120, 290
BmrFI CCNGG 3 cut(s) 296, 537, 660
BmsI GCATC 2 cut(s) 787, 913
BoxI GACNNNNGTC 1 cut(s) 392
BpmI CTGGAG 3 cut(s) 278, 519, 642
Bpu10I CCTNAGC 3 cut(s) 477, 591, 741
Bpu1102I GCTNAGC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 114, 145, 536
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 462, 542, 818
Bse1I ACTGG 1 cut(s) 456
Bse21I CCTNAGG 1 cut(s) 891
Bse3DI GCAATG 2 cut(s) 219, 405
BseBI CCWGG 3 cut(s) 296, 537, 660
BseDI CCNNGG 3 cut(s) 114, 145, 536
BseGI GGATG 4 cut(s) 562, 668, 727, 985
BseLI CCNNNNNNNGG 4 cut(s) 332, 462, 542, 818
BseMI GCAATG 2 cut(s) 219, 405
BseMII CTCAG 8 cut(s) 263, 414, 468, 516, 582, 708, 755, 905
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 2 cut(s) 30, 88
BsiHKAI GWGCWC 1 cut(s) 174
BsiWI CGTACG 1 cut(s) 58
BslFI GGGAC 2 cut(s) 369, 472
BslI CCNNNNNNNGG 4 cut(s) 332, 462, 542, 818
BsmAI GTCTC 3 cut(s) 247, 652, 769
BsmFI GGGAC 2 cut(s) 369, 472
BsmI GAATGC 3 cut(s) 223, 346, 592
BsnI GGCC 2 cut(s) 30, 88
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 6 cut(s) 288, 442, 550, 748, 844, 941
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 6 cut(s) 105, 108, 111, 221, 428, 977
BspANI GGCC 2 cut(s) 30, 88
BspCNI CTCAG 8 cut(s) 262, 415, 469, 515, 583, 709, 754, 904
BspLI GGNNCC 2 cut(s) 120, 290
BspPI GGATC 2 cut(s) 283, 296
BspTI CTTAAG 1 cut(s) 629
BsrDI GCAATG 2 cut(s) 219, 405
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 3 cut(s) 114, 145, 536
BssMI GATC 6 cut(s) 288, 442, 550, 748, 844, 941
BssNAI GTATAC 2 cut(s) 8, 246
BssSI CACGAG 2 cut(s) 200, 328
Bst1107I GTATAC 2 cut(s) 8, 246
Bst2BI CACGAG 2 cut(s) 200, 328
Bst2UI CCWGG 3 cut(s) 296, 537, 660
Bst4CI ACNGT 3 cut(s) 418, 829, 1008
Bst6I CTCTTC 3 cut(s) 19, 477, 876
BstAFI CTTAAG 1 cut(s) 629
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 915
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 4 cut(s) 562, 668, 727, 985
BstKTI GATC 6 cut(s) 291, 445, 553, 751, 847, 944
BstMAI GTCTC 3 cut(s) 247, 652, 769
BstMBI GATC 6 cut(s) 288, 442, 550, 748, 844, 941
BstMWI GCNNNNNNNGC 4 cut(s) 101, 110, 218, 923
BstNI CCWGG 3 cut(s) 296, 537, 660
BstNSI RCATGY 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 392
BstSCI CCNGG 3 cut(s) 294, 535, 658
BstSFI CTRYAG 2 cut(s) 274, 864
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 3 cut(s) 288, 442, 844
BstYI RGATCY 3 cut(s) 288, 442, 844
BstZ17I GTATAC 2 cut(s) 8, 246
Bsu36I CCTNAGG 1 cut(s) 891
BsuRI GGCC 2 cut(s) 30, 88
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 4 cut(s) 562, 668, 727, 985
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 915
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 59, 205
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 3 cut(s) 16, 755, 878
CviQI GTAC 2 cut(s) 59, 205
DpnI GATC 6 cut(s) 290, 444, 552, 750, 846, 943
DpnII GATC 6 cut(s) 288, 442, 550, 748, 844, 941
Eam1104I CTCTTC 3 cut(s) 19, 477, 876
EarI CTCTTC 3 cut(s) 19, 477, 876
EciI GGCGGA 1 cut(s) 443
Ecl136II GAGCTC 1 cut(s) 172
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 411
Eco81I CCTNAGG 1 cut(s) 891
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 294, 535, 658
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 3 cut(s) 19, 758, 881
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FaqI GGGAC 2 cut(s) 369, 472
FatI CATG 3 cut(s) 15, 754, 877
FauI CCCGC 1 cut(s) 214
FblI GTMKAC 2 cut(s) 7, 245
Fnu4HI GCNGC 4 cut(s) 74, 105, 108, 111
FokI GGATG 4 cut(s) 569, 675, 734, 992
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 74, 105, 108, 111
GluI GCNGC 4 cut(s) 74, 105, 108, 111
GsuI CTGGAG 3 cut(s) 278, 519, 642
HaeIII GGCC 2 cut(s) 30, 88
Hin1II CATG 3 cut(s) 19, 758, 881
HinfI GANTC 5 cut(s) 188, 380, 485, 596, 886
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 3 cut(s) 8, 199, 246
Hpy188I TCNGA 9 cut(s) 252, 398, 424, 520, 550, 616, 718, 844, 1001
Hpy188III TCNNGA 3 cut(s) 554, 577, 848
Hpy8I GTNNAC 3 cut(s) 8, 199, 246
HpyAV CCTTC 3 cut(s) 78, 144, 160
HpyCH4III ACNGT 3 cut(s) 418, 829, 1008
HpyCH4V TGCA 1 cut(s) 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 110, 218, 923
Hsp92II CATG 3 cut(s) 19, 758, 881
Kzo9I GATC 6 cut(s) 288, 442, 550, 748, 844, 941
LmnI GCTCC 4 cut(s) 169, 298, 661, 871
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 787, 913
MaeIII GTNAC 6 cut(s) 18, 269, 458, 559, 672, 832
MalI GATC 6 cut(s) 290, 444, 552, 750, 846, 943
MboI GATC 6 cut(s) 288, 442, 550, 748, 844, 941
MboII GAAGA 6 cut(s) 36, 93, 494, 533, 591, 893
MflI RGATCY 3 cut(s) 288, 442, 844
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 227, 279, 984
MlyI GAGTC 2 cut(s) 389, 494
MmeI TCCRAC 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 885
MseI TTAA 2 cut(s) 240, 630
MslI CAYNNNNRTG 1 cut(s) 759
MspCI CTTAAG 1 cut(s) 629
MspR9I CCNGG 3 cut(s) 296, 537, 660
Mva1269I GAATGC 3 cut(s) 223, 346, 592
MvaI CCWGG 3 cut(s) 296, 537, 660
MwoI GCNNNNNNNGC 4 cut(s) 101, 110, 218, 923
NdeII GATC 6 cut(s) 288, 442, 550, 748, 844, 941
NlaIII CATG 3 cut(s) 19, 758, 881
NlaIV GGNNCC 2 cut(s) 120, 290
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 458, 559
NspI RCATGY 1 cut(s) 19
PceI AGGCCT 1 cut(s) 30
PctI GAATGC 3 cut(s) 223, 346, 592
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 3 cut(s) 188, 596, 886
Pfl23II CGTACG 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 818
PfoI TCCNGGA 2 cut(s) 294, 658
PkrI GCNGC 4 cut(s) 75, 106, 109, 112
PleI GAGTC 2 cut(s) 388, 493
PpsI GAGTC 2 cut(s) 388, 493
PshAI GACNNNNGTC 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 3 cut(s) 294, 535, 658
PspGI CCWGG 3 cut(s) 294, 535, 658
PspLI CGTACG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 120, 290
PspPI GGNCC 1 cut(s) 87
PsuI RGATCY 3 cut(s) 288, 442, 844
RsaI GTAC 2 cut(s) 60, 206
RsaNI GTAC 2 cut(s) 59, 205
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 240, 630
SatI GCNGC 4 cut(s) 74, 105, 108, 111
Sau3AI GATC 6 cut(s) 288, 442, 550, 748, 844, 941
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 2 cut(s) 389, 494
ScrFI CCNGG 3 cut(s) 296, 537, 660
SduI GDGCHC 1 cut(s) 174
SetI ASST 9 cut(s) 48, 174, 303, 403, 478, 547, 742, 915, 934
SfaNI GCATC 2 cut(s) 787, 913
SfcI CTRYAG 2 cut(s) 274, 864
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 3 cut(s) 227, 279, 984
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 6 cut(s) 105, 108, 111, 221, 428, 977
SstI GAGCTC 1 cut(s) 174
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 294, 535, 658
TaaI ACNGT 3 cut(s) 418, 829, 1008
TaqI TCGA 1 cut(s) 751
TasI AATT 3 cut(s) 227, 279, 984
TatI WGTACW 1 cut(s) 204
TauI GCSGC 3 cut(s) 107, 110, 113
TfiI GAWTC 3 cut(s) 188, 596, 886
Tru1I TTAA 2 cut(s) 240, 630
Tru9I TTAA 2 cut(s) 240, 630
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 2 cut(s) 458, 559
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 2 cut(s) 458, 559
TspDTI ATGAA 4 cut(s) 230, 591, 894, 980
TspGWI ACGGA 2 cut(s) 46, 134
TspRI CASTG 1 cut(s) 463
Van91I CCANNNNNTGG 1 cut(s) 818
Vha464I CTTAAG 1 cut(s) 629
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 2 cut(s) 7, 245
XmnI GAANNNNTTC 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.