Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006684

Physical Location & Seq

Genomic Coordinates Forward (+)

6558158 .. 6564886

Gene Structure 6729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGATGCTATCTTGTTAGCTGACCTGAATCTTGTGTCAATGATTCGGAAAGAGAGAGAAAAGAGGGACATAGAGAGACAAAAAGAATGGTTGGCCAGTGGTGAGGAGGAGAGGCGGTTCCTGCTCAGGTTGGTACTTGGAATGGGTGGCTGTCAGAGTTTTGGGAGAAAATCAAAGGCTTTAGACAATCAGACAGCGCGACATGCAAATCCTACTTTCCATGGATGTACTTGTAGCCTTGTAGAGATAGGGCATGCCCCGCCACAGAGCATGTTACGAAGAAGCCTCACTTTTTCCTCCTTCAACTCCCACAAGCACCTTAACAAATCTGTTTTATTGAGTGGGTGGCGTGGAAGGCCATACGCCGGTAACGCTAACGCTGCAGCTGCAGAGGCAGATGCAGAGGCAGAGGCAGAAGCAGAAGCAGTGGCAGAAGCACCAAAACGAAATGTCCGCAGAGTTAAAGGGAAAAGGCTTTCCAAAGCGGAGCGCCAAGCTATGCTTGAACCCTTTGTCAACAAGTACAGAGCAATGAATGCTGGGGCATTCCCTACTGTTTCATGTGCTCAGAAAGAACTGGGTGGCTCTTACTATGTGGTAAAGGGCATCCTTCAGGAGTTACAATACAAAGCTAAGATGTCACCCTGGTCTCCCGTAAGTGCGGATATGCCAAAACAAGAAGAAGTTAGAGAAATTGAATCTTTGGCTCAAGTTGAAGAGAATTCAAACAGTCAGGTGTCAGTACATGCCAGCACTGAAACTGATTCTGAGGTGACATATGATGCTGATCTGCCAGGACAAGAGGGTGTTGGTGAAATGGAATCTTTGACTCAATGTGAAGAGAATTCAATCTCTGAGGTGTCCGCAGATGCGGGTGTTCAAAATGATTCTGAAGAGACATATGATACTGATCTTCCGGGACAAGAAGAAGTTGGAGAAATTGAATCTCTGACTGGAGTTGAAGATAATTCAACCTATGGGGTGTCAGCAGATGCCAGTGGCAGGCATTTAGAAGCCAATGAAGAGGCACAGGCTTCCTCCTCAGTTGAGATCTTGTCTGAAGAGGTTATCACTCGAGGAAGTGATTCTGATCTTGTTGCAACACAAAGTAATTTTCTGAAAGTGGATTCTGTGGAATCTTCTTATAAAGACCCTGATGAACTTAGTAATAGTAAGGAGGAAGCTAAGCAGAATCTTTCTGGTTCTATTTCTAAAGAATGTCAACTGTCAGAAGAAAGATTCGAGGTTGTTTCTTATCCATTTGGCAAATCTGAGAATAGTGAAAGAGCGGAAGCTGAAGCTGACAAACAAGATTTTGTTGCAAAAGAAAAAGATCTGCCAATAGGGGAAGCTAATAGAGCCTCTCTTCCAAGTTTTGGTGATATACAGGATATGAAAAAACAAGAACATGCCTTAGAAGATCTACCAGATTATGATGATTTAAAGTGTAAAAGAGAGAAATATGAAGAGATCCCTCTGCCAGACAAACTTCCCAAAGACCTTCCTGGTAGGCAGGCTGATGATGCAGAGCCTTCAAGTAAATCAACTCTATGGGGGAATATGAAGTCATTTGCGAATGGCATTATCAGTATCTTCAGAAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

536

Amino Acids

59.0

Weight (kDa)

4.77

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58210 AT5G58210 AT5G58210 AT5G58210
fragaria_vesca	FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110
malus_domestica	MD10G1047400.v1.1
prunus_persica	Prupe.8G056400_v2.0.a1
pyrus_communis	pycom10g03350
rosa_chinensis	RchiOBHm_Chr7g0218101
rosa_laevigata	RLG00000002405
rosa_multiflora	Rmu_sc0000379.1_g000020
rosa_roxburghii	Rroxscaffold_3G00241320
rosa_rugosa	Rorug07G0174000 Rorug07G0174000 Rorug07G0174000
rosa_samantha	Rh2DG626300 Rh4BG100100 Rh7AG316400 Rh7BG307500 Rh7CG333400 Rh7DG315300
rosa_wichuraiana	Rw7G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1146
AccB7I	CCANNNNNTGG	1 cut(s)	1376
AccBSI	CCGCTC	1 cut(s)	1289
AccII	CGCG	1 cut(s)	199
AciI	CCGC	8 cut(s)	115, 260, 454, 485, 662, 864, 872, 1289
AclWI	GGATC	1 cut(s)	1465
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	721, 844
AcuI	CTGAAG	5 cut(s)	596, 912, 1080, 1317, 1579
AfaI	GTAC	4 cut(s)	135, 229, 524, 744
AfiI	CCNNNNNNNGG	3 cut(s)	365, 1002, 1376
AjnI	CCWGG	3 cut(s)	644, 793, 1504
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	8 cut(s)	20, 386, 497, 632, 1184, 1295, 1301, 1352
AluI	AGCT	8 cut(s)	20, 386, 497, 632, 1184, 1295, 1301, 1352
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	3 cut(s)	70, 654, 890
AlwI	GGATC	1 cut(s)	1465
Ama87I	CYCGRG	1 cut(s)	1074
AoxI	GGCC	2 cut(s)	93, 356
ApeKI	GCWGC	3 cut(s)	380, 383, 386
ApoI	RAATTY	2 cut(s)	721, 844
Asp700I	GAANNNNTTC	1 cut(s)	1084
AspLEI	GCGC	2 cut(s)	199, 492
AsuC2I	CCSGG	1 cut(s)	918
AsuHPI	GGTGA	5 cut(s)	113, 633, 784, 824, 1391
AvaI	CYCGRG	1 cut(s)	1074
BalI	TGGCCA	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	3 cut(s)	367, 373, 395
BciT130I	CCWGG	3 cut(s)	646, 795, 1506
BcnI	CCSGG	1 cut(s)	918
BcoDI	GTCTC	3 cut(s)	70, 654, 890
BfmI	CTRYAG	2 cut(s)	381, 387
BfoI	RGCGCY	1 cut(s)	493
BglII	AGATCT	3 cut(s)	1050, 1333, 1420
BisI	GCNGC	3 cut(s)	381, 384, 387
BlpI	GCTNAGC	1 cut(s)	1185
BlsI	GCNGC	3 cut(s)	382, 385, 388
Bme1390I	CCNGG	4 cut(s)	646, 795, 918, 1506
BmeT110I	CYCGRG	1 cut(s)	1074
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	4 cut(s)	646, 795, 918, 1506
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	6 cut(s)	388, 615, 772, 859, 982, 1513
BmuI	ACTGGG	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	1185
BpuEI	CTTGAG	1 cut(s)	693
BpuMI	CCSGG	1 cut(s)	918
BsaBI	GATNNNNATC	3 cut(s)	786, 909, 1089
BsaI	GGTCTC	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	220, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 1002, 1376
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	4 cut(s)	96, 582, 958, 996
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	3 cut(s)	786, 909, 1089
BseBI	CCWGG	3 cut(s)	646, 795, 1506
BseDI	CCNNGG	2 cut(s)	220, 644
BseGI	GGATG	3 cut(s)	10, 230, 606
BseJI	GATNNNNATC	3 cut(s)	786, 909, 1089
BseLI	CCNNNNNNNGG	3 cut(s)	365, 1002, 1376
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	6 cut(s)	139, 581, 759, 846, 1056, 1263
BseNI	ACTGG	4 cut(s)	96, 582, 958, 996
BseRI	GAGGAG	3 cut(s)	119, 122, 1030
BseXI	GCAGC	3 cut(s)	367, 373, 395
BseYI	CCCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	95, 358
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	1074
BsiSI	CCGG	2 cut(s)	366, 917
BslFI	GGGAC	2 cut(s)	80, 933
BslI	CCNNNNNNNGG	3 cut(s)	365, 1002, 1376
BsmAI	GTCTC	3 cut(s)	70, 654, 890
BsmFI	GGGAC	2 cut(s)	80, 933
BsmI	GAATGC	2 cut(s)	541, 545
BsnI	GGCC	2 cut(s)	95, 358
Bso31I	GGTCTC	1 cut(s)	654
BsoBI	CYCGRG	1 cut(s)	1074
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
Bsp1720I	GCTNAGC	1 cut(s)	1185
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	8 cut(s)	115, 260, 454, 485, 662, 864, 872, 1289
BspANI	GGCC	2 cut(s)	95, 358
BspCNI	CTCAG	6 cut(s)	138, 580, 760, 847, 1055, 1264
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	2 cut(s)	385, 391
BspPI	GGATC	1 cut(s)	1465
BspTNI	GGTCTC	1 cut(s)	654
BsrBI	CCGCTC	1 cut(s)	1289
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	4 cut(s)	96, 582, 958, 996
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	220, 644
BssMI	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	3 cut(s)	646, 795, 1506
Bst4CI	ACNGT	4 cut(s)	556, 731, 1227, 1605
Bst6I	CTCTTC	7 cut(s)	711, 834, 888, 1017, 1056, 1371, 1461
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	4 cut(s)	255, 751, 1004, 1515
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	10, 230, 606
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	2 cut(s)	199, 492
BstKTI	GATC	7 cut(s)	790, 913, 1053, 1093, 1336, 1423, 1473
BstMAI	GTCTC	3 cut(s)	70, 654, 890
BstMBI	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
BstNI	CCWGG	3 cut(s)	646, 795, 1506
BstNSI	RCATGY	5 cut(s)	206, 257, 274, 749, 1412
BstSCI	CCNGG	4 cut(s)	644, 793, 916, 1504
BstSFI	CTRYAG	2 cut(s)	381, 387
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	367, 373, 395
BstX2I	RGATCY	4 cut(s)	1050, 1333, 1420, 1470
BstYI	RGATCY	4 cut(s)	1050, 1333, 1420, 1470
BsuRI	GGCC	2 cut(s)	95, 358
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	10, 230, 606
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	4 cut(s)	103, 432, 753, 1003
Cac8I	GCNNGC	4 cut(s)	255, 751, 1004, 1515
CfoI	GCGC	2 cut(s)	199, 492
Cfr10I	RCCGGY	1 cut(s)	365
Csp6I	GTAC	4 cut(s)	134, 228, 523, 743
CviAII	CATG	7 cut(s)	203, 221, 254, 271, 561, 746, 1409
CviQI	GTAC	4 cut(s)	134, 228, 523, 743
DpnI	GATC	7 cut(s)	789, 912, 1052, 1092, 1335, 1422, 1472
DpnII	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
DraI	TTTAAA	1 cut(s)	1443
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	7 cut(s)	711, 834, 888, 1017, 1056, 1371, 1461
EarI	CTCTTC	7 cut(s)	711, 834, 888, 1017, 1056, 1371, 1461
Eco130I	CCWWGG	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	654
Eco57I	CTGAAG	5 cut(s)	596, 912, 1080, 1317, 1579
Eco88I	CYCGRG	1 cut(s)	1074
EcoRI	GAATTC	2 cut(s)	721, 844
EcoRII	CCWGG	3 cut(s)	644, 793, 1504
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	7 cut(s)	206, 224, 257, 274, 564, 749, 1412
FalI	AAGNNNNNCTT	4 cut(s)	274, 306, 486, 518
FaqI	GGGAC	2 cut(s)	80, 933
FatI	CATG	7 cut(s)	202, 220, 253, 270, 560, 745, 1408
FauI	CCCGC	2 cut(s)	267, 865
FauNDI	CATATG	2 cut(s)	778, 901
Fnu4HI	GCNGC	3 cut(s)	381, 384, 387
FokI	GGATG	3 cut(s)	17, 237, 593
Fsp4HI	GCNGC	3 cut(s)	381, 384, 387
GlaI	GCGC	2 cut(s)	198, 491
GluI	GCNGC	3 cut(s)	381, 384, 387
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	975
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	95, 358
HapII	CCGG	2 cut(s)	366, 917
HhaI	GCGC	2 cut(s)	199, 492
Hin1II	CATG	7 cut(s)	206, 224, 257, 274, 564, 749, 1412
Hin6I	GCGC	2 cut(s)	197, 490
HinP1I	GCGC	2 cut(s)	197, 490
HincII	GTYRAC	2 cut(s)	517, 1223
HindII	GTYRAC	2 cut(s)	517, 1223
HpaII	CCGG	2 cut(s)	366, 917
HphI	GGTGA	5 cut(s)	113, 633, 784, 824, 1391
Hpy166II	GTNNAC	2 cut(s)	517, 1223
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	2 cut(s)	517, 1223
HpyAV	CCTTC	5 cut(s)	310, 348, 620, 1511, 1542
HpyCH4III	ACNGT	4 cut(s)	556, 731, 1227, 1605
HpyCH4V	TGCA	7 cut(s)	206, 383, 389, 401, 1100, 1322, 1526
Hsp92II	CATG	7 cut(s)	206, 224, 257, 274, 564, 749, 1412
HspAI	GCGC	2 cut(s)	197, 490
Kzo9I	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	3 cut(s)	367, 373, 395
LweI	GCATC	6 cut(s)	388, 615, 772, 859, 982, 1513
MaeIII	GTNAC	5 cut(s)	273, 368, 618, 639, 772
MalI	GATC	7 cut(s)	789, 912, 1052, 1092, 1335, 1422, 1472
MbiI	CCGCTC	1 cut(s)	1289
MboI	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
MflI	RGATCY	4 cut(s)	1050, 1333, 1420, 1470
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	6 cut(s)	693, 721, 844, 939, 967, 1111
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	1 cut(s)	913
Mox20I	TGGCCA	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	1084
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	3 cut(s)	321, 462, 1442
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	366, 917
MspR9I	CCNGG	4 cut(s)	646, 795, 918, 1506
Mva1269I	GAATGC	2 cut(s)	541, 545
MvaI	CCWGG	3 cut(s)	646, 795, 1506
MvnI	CGCG	1 cut(s)	199
NciI	CCSGG	1 cut(s)	918
NcoI	CCATGG	1 cut(s)	220
NdeI	CATATG	2 cut(s)	778, 901
NdeII	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
NlaIII	CATG	7 cut(s)	206, 224, 257, 274, 564, 749, 1412
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	639, 772
NspI	RCATGY	5 cut(s)	206, 257, 274, 749, 1412
PaeI	GCATGC	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	1074
PctI	GAATGC	2 cut(s)	541, 545
PdmI	GAANNNNTTC	1 cut(s)	1084
PflMI	CCANNNNNTGG	1 cut(s)	1376
PfoI	TCCNGGA	1 cut(s)	916
PkrI	GCNGC	3 cut(s)	382, 385, 388
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
PsiI	TTATAA	1 cut(s)	1146
Psp6I	CCWGG	3 cut(s)	644, 793, 1504
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	3 cut(s)	644, 793, 1504
PspN4I	GGNNCC	1 cut(s)	119
PspXI	VCTCGAGB	1 cut(s)	1074
PstI	CTGCAG	2 cut(s)	385, 391
PsuI	RGATCY	4 cut(s)	1050, 1333, 1420, 1470
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	4 cut(s)	135, 229, 524, 744
RsaNI	GTAC	4 cut(s)	134, 228, 523, 743
SaqAI	TTAA	3 cut(s)	321, 462, 1442
SatI	GCNGC	3 cut(s)	381, 384, 387
Sau3AI	GATC	7 cut(s)	787, 910, 1050, 1090, 1333, 1420, 1470
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	4 cut(s)	646, 795, 918, 1506
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	6 cut(s)	388, 615, 772, 859, 982, 1513
SfcI	CTRYAG	2 cut(s)	381, 387
Sfr274I	CTCGAG	1 cut(s)	1074
SlaI	CTCGAG	1 cut(s)	1074
SmlI	CTYRAG	2 cut(s)	708, 1074
SmoI	CTYRAG	2 cut(s)	708, 1074
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	6 cut(s)	693, 721, 844, 939, 967, 1111
SsiI	CCGC	8 cut(s)	115, 260, 454, 485, 662, 864, 872, 1289
StyD4I	CCNGG	4 cut(s)	644, 793, 916, 1504
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	4 cut(s)	556, 731, 1227, 1605
TaqI	TCGA	2 cut(s)	1075, 1242
TasI	AATT	6 cut(s)	693, 721, 844, 939, 967, 1111
TatI	WGTACW	3 cut(s)	227, 522, 742
Tru1I	TTAA	3 cut(s)	321, 462, 1442
Tru9I	TTAA	3 cut(s)	321, 462, 1442
TscAI	CASTG	4 cut(s)	103, 432, 760, 1003
TseFI	GTSAC	2 cut(s)	639, 772
TseI	GCWGC	3 cut(s)	380, 383, 386
Tsp45I	GTSAC	2 cut(s)	639, 772
TspDTI	ATGAA	7 cut(s)	548, 549, 1035, 1173, 1409, 1479, 1577
TspRI	CASTG	4 cut(s)	103, 432, 760, 1003
Van91I	CCANNNNNTGG	1 cut(s)	1376
XapI	RAATTY	2 cut(s)	721, 844
XceI	RCATGY	5 cut(s)	206, 257, 274, 749, 1412
XhoI	CTCGAG	1 cut(s)	1074
XmnI	GAANNNNTTC	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.