RchiOBHm_Chr7g0218101

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006684
Physical Location & Seq
Reverse (-)
36049692 .. 36054076
4385 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19523

Sequence Viewer

Length: 1326 bp
ATGAGTATACAGAGCATGTTACGAAGAGGCCTCACTTTCAATCACCTCCCCAAATCCGTACGACCAAGTGGGCTGCGAGGAAGAAGGCCCTATGCTAACAATGCCGCCTCCGCCGCCGCCGCCGAGGAACCAAACCCAGATGGCAACAAAGTCCGTGGAAGGAGGCTGAGCAAGAAGGAGCTCAAAGCCCTTGTCGAATCATTTGTCCACGAGTACAGAGCAATGAATGCGGGGAAATTCCCTCCCTTTAAGTATACTCAGAGACAAGTGGGTGGCAGTTACTATAGAATTAGGGGGATCCTCCAGGAGCTACAGTACACGGCTAAAATCTCGCCCTCGTGTGGTGGGATTGAGCATTCGTTGGGACGAGAGGGAATAAGAGGAAGTGAGTCTTTGACTGAAGTCGGAGGTGTCATTGCTCAAACTGTTTCTGAGGCGGAAAATGACACAGATCTTAGTGTTGCCAGTGACGGGTGTTTAGAAGCTGAGGAAGAGTCCCAGACGTCCTCCTCAGTTGAGATTTTGTCCGAAGAAGTTATCACTCCAGGGAGAGGTTCTGATCTGGATGTCACACAAAGTAATATCTGGAAAGTGAATGCTGAGGAATCTTCATATATAGGCCTTGATATGGAGGAACTTAAGAAAACTCAATTTGTCTCTATTGCTCCAGGATGTGAGATGTTACAAGGAGGATTTGATGTTATTTCTCATTCACATGACAAATCTGAGGATGGTAAAAGGGAGGAAGCTCAGGCTCATCAACATGATTATGTCTCTAAAGAAAAGCATCTACATATAGGGGAAACTAATCCAGCCTCTCCAAGTTCTGATGATACGGAGGATATTACTAAACCGGATCTTGATGATTCAGAGTGTAAAATGAAGCAACATGATGAGACCCCTCAGGCTGATCGACTTGATTCCATTGCTGCAGAAAAACATCTACCAATAGCGGAAACTAATAGAGTCTCTTCAAGTTCTGATGATACAGAGGATGTTACTAAACCACATCTTGATGATTCAAAGTGTAAAATGGACCAGCATGAAGAGATCCCTCAGGCTGATCGACTTGATTTTGTTGCTAAAGAAAAACATTTACCAATAGCGGAAACTAATAGAGCCTCTCCAAGTTCTGGTGATACTGTTGTTACTAAATCAGATCTTGATGTTTCAAAGTCTATAGTGGAGCAACATGAAGAGATTCCTCAGGCAGACAAACTATCCAAGCTGGCTGATGATGCAGAACCTCCAAAAAGATCAACAACTCTATGGGGTGCTATGAAATCGTTTGCGGATGGAATTATCAGTATTTTCAGACAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

48.53

Weight (kDa)

5.06

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 57 - 106 1.2e-22 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 506
AccB7I CCANNNNNTGG 1 cut(s) 1133
AccI GTMKAC 2 cut(s) 7, 254
AclWI GGATC 4 cut(s) 292, 305, 864, 1045
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 3 cut(s) 60, 215, 317
AfiI CCNNNNNNNGG 5 cut(s) 341, 471, 551, 628, 1133
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 4 cut(s) 40, 975, 1023, 1173
AjnI CCWGG 3 cut(s) 303, 544, 667
AluBI AGCT 5 cut(s) 181, 310, 485, 749, 1228
AluI AGCT 5 cut(s) 181, 310, 485, 749, 1228
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 5 cut(s) 256, 661, 778, 890, 973
AlwI GGATC 4 cut(s) 292, 305, 864, 1045
AoxI GGCC 3 cut(s) 28, 86, 619
ApeKI GCWGC 2 cut(s) 73, 929
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 4 cut(s) 177, 189, 209, 221
Asp700I GAANNNNTTC 1 cut(s) 1200
AspS9I GGNCC 2 cut(s) 87, 1036
AsuHPI GGTGA 2 cut(s) 35, 1148
AvaII GGWCC 1 cut(s) 1036
AxyI CCTNAGG 3 cut(s) 903, 1056, 1206
BaeI ACNNNNGTAYC 2 cut(s) 1131, 1164
BamHI GGATCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 2 cut(s) 209, 337
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 2 cut(s) 486, 600
BbvI GCAGC 2 cut(s) 60, 916
BccI CCATC 3 cut(s) 134, 725, 1289
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 3 cut(s) 305, 546, 669
BcoDI GTCTC 5 cut(s) 256, 661, 778, 890, 973
BfmI CTRYAG 4 cut(s) 283, 311, 930, 1179
BfrI CTTAAG 1 cut(s) 638
BglII AGATCT 2 cut(s) 451, 1159
BisI GCNGC 6 cut(s) 74, 105, 114, 117, 120, 930
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 6 cut(s) 75, 106, 115, 118, 121, 931
Bme1390I CCNGG 3 cut(s) 305, 546, 669
Bme18I GGWCC 1 cut(s) 1036
BmgT120I GGNCC 2 cut(s) 87, 1036
BmiI GGNNCC 2 cut(s) 129, 299
BmrFI CCNGG 3 cut(s) 305, 546, 669
BmsI GCATC 2 cut(s) 796, 1228
BoxI GACNNNNGTC 1 cut(s) 401
BpmI CTGGAG 3 cut(s) 287, 528, 651
Bpu10I CCTNAGC 3 cut(s) 486, 600, 750
Bpu1102I GCTNAGC 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 503
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 3 cut(s) 123, 154, 545
BsaWI WCCGGW 1 cut(s) 853
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 341, 471, 551, 628, 1133
Bse1I ACTGG 1 cut(s) 465
Bse21I CCTNAGG 3 cut(s) 903, 1056, 1206
Bse3DI GCAATG 3 cut(s) 228, 414, 924
BseBI CCWGG 3 cut(s) 305, 546, 669
BseDI CCNNGG 3 cut(s) 123, 154, 545
BseGI GGATG 5 cut(s) 571, 677, 736, 1000, 1300
BseLI CCNNNNNNNGG 5 cut(s) 341, 471, 551, 628, 1133
BseMI GCAATG 3 cut(s) 228, 414, 924
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 499
BseXI GCAGC 2 cut(s) 60, 916
BshFI GGCC 3 cut(s) 30, 88, 621
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 854
BsiWI CGTACG 1 cut(s) 58
BslFI GGGAC 2 cut(s) 378, 481
BslI CCNNNNNNNGG 5 cut(s) 341, 471, 551, 628, 1133
BsmAI GTCTC 5 cut(s) 256, 661, 778, 890, 973
BsmFI GGGAC 2 cut(s) 378, 481
BsmI GAATGC 3 cut(s) 232, 355, 601
BsnI GGCC 3 cut(s) 30, 88, 621
Bso31I GGTCTC 1 cut(s) 890
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
Bsp1720I GCTNAGC 1 cut(s) 167
BspANI GGCC 3 cut(s) 30, 88, 621
BspLI GGNNCC 2 cut(s) 129, 299
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 4 cut(s) 292, 305, 864, 1045
BspTI CTTAAG 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 890
BsrDI GCAATG 3 cut(s) 228, 414, 924
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 123, 154, 545
BssMI GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
BssNAI GTATAC 2 cut(s) 8, 255
BssNI GRCGYC 1 cut(s) 503
BssSI CACGAG 2 cut(s) 209, 337
Bst1107I GTATAC 2 cut(s) 8, 255
Bst2BI CACGAG 2 cut(s) 209, 337
Bst2UI CCWGG 3 cut(s) 305, 546, 669
Bst4CI ACNGT 4 cut(s) 315, 427, 1144, 1323
Bst6I CTCTTC 5 cut(s) 19, 486, 976, 1041, 1191
BstACI GRCGYC 1 cut(s) 503
BstAFI CTTAAG 1 cut(s) 638
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 1230
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 5 cut(s) 571, 677, 736, 1000, 1300
BstKTI GATC 9 cut(s) 300, 454, 562, 859, 913, 1053, 1066, 1162, 1259
BstMAI GTCTC 5 cut(s) 256, 661, 778, 890, 973
BstMBI GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
BstMWI GCNNNNNNNGC 6 cut(s) 101, 110, 113, 119, 227, 1238
BstNI CCWGG 3 cut(s) 305, 546, 669
BstNSI RCATGY 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 401
BstSCI CCNGG 3 cut(s) 303, 544, 667
BstSFI CTRYAG 4 cut(s) 283, 311, 930, 1179
BstV1I GCAGC 2 cut(s) 60, 916
BstX2I RGATCY 5 cut(s) 297, 451, 856, 1050, 1159
BstYI RGATCY 5 cut(s) 297, 451, 856, 1050, 1159
BstZ17I GTATAC 2 cut(s) 8, 255
Bsu36I CCTNAGG 3 cut(s) 903, 1056, 1206
BsuRI GGCC 3 cut(s) 30, 88, 621
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 5 cut(s) 571, 677, 736, 1000, 1300
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 1230
Cfr13I GGNCC 2 cut(s) 87, 1036
Csp6I GTAC 3 cut(s) 59, 214, 316
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 6 cut(s) 16, 716, 764, 890, 1043, 1193
CviQI GTAC 3 cut(s) 59, 214, 316
DpnI GATC 9 cut(s) 299, 453, 561, 858, 912, 1052, 1065, 1161, 1258
DpnII GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
Eam1104I CTCTTC 5 cut(s) 19, 486, 976, 1041, 1191
EarI CTCTTC 5 cut(s) 19, 486, 976, 1041, 1191
EciI GGCGGA 2 cut(s) 100, 452
Ecl136II GAGCTC 1 cut(s) 181
Eco147I AGGCCT 2 cut(s) 30, 621
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 1036
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 420
Eco81I CCTNAGG 3 cut(s) 903, 1056, 1206
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 303, 544, 667
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 6 cut(s) 19, 719, 767, 893, 1046, 1196
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 2 cut(s) 378, 481
FatI CATG 6 cut(s) 15, 715, 763, 889, 1042, 1192
FauI CCCGC 1 cut(s) 223
FblI GTMKAC 2 cut(s) 7, 254
Fnu4HI GCNGC 6 cut(s) 74, 105, 114, 117, 120, 930
FokI GGATG 5 cut(s) 578, 684, 743, 1007, 1307
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 6 cut(s) 74, 105, 114, 117, 120, 930
GluI GCNGC 6 cut(s) 74, 105, 114, 117, 120, 930
GsuI CTGGAG 3 cut(s) 287, 528, 651
HaeIII GGCC 3 cut(s) 30, 88, 621
HapII CCGG 1 cut(s) 854
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 6 cut(s) 19, 719, 767, 893, 1046, 1196
HinfI GANTC 9 cut(s) 197, 389, 494, 605, 866, 920, 966, 1019, 1201
HpaII CCGG 1 cut(s) 854
HphI GGTGA 2 cut(s) 35, 1148
Hpy166II GTNNAC 4 cut(s) 8, 208, 255, 318
Hpy188III TCNNGA 5 cut(s) 563, 586, 860, 1013, 1163
Hpy8I GTNNAC 4 cut(s) 8, 208, 255, 318
HpyAV CCTTC 3 cut(s) 78, 153, 169
HpyCH4III ACNGT 4 cut(s) 315, 427, 1144, 1323
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 2 cut(s) 932, 1241
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 110, 113, 119, 227, 1238
HpySE526I ACGT 1 cut(s) 503
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 6 cut(s) 19, 719, 767, 893, 1046, 1196
Kzo9I GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
LmnI GCTCC 4 cut(s) 178, 307, 670, 1186
Lsp1109I GCAGC 2 cut(s) 60, 916
LweI GCATC 2 cut(s) 796, 1228
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 7 cut(s) 18, 278, 467, 568, 681, 997, 1147
MalI GATC 9 cut(s) 299, 453, 561, 858, 912, 1052, 1065, 1161, 1258
MboI GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
MboII GAAGA 8 cut(s) 36, 93, 503, 542, 600, 963, 1058, 1208
MflI RGATCY 5 cut(s) 297, 451, 856, 1050, 1159
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 236, 288, 650, 1299
MlyI GAGTC 3 cut(s) 398, 503, 975
MmeI TCCRAC 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 1200
MseI TTAA 2 cut(s) 249, 639
MslI CAYNNNNRTG 4 cut(s) 714, 762, 768, 1014
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 1 cut(s) 854
MspR9I CCNGG 3 cut(s) 305, 546, 669
Mva1269I GAATGC 3 cut(s) 232, 355, 601
MvaI CCWGG 3 cut(s) 305, 546, 669
MwoI GCNNNNNNNGC 6 cut(s) 101, 110, 113, 119, 227, 1238
NdeII GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
NlaIII CATG 6 cut(s) 19, 719, 767, 893, 1046, 1196
NlaIV GGNNCC 2 cut(s) 129, 299
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 467, 568
NspI RCATGY 1 cut(s) 19
PceI AGGCCT 2 cut(s) 30, 621
PctI GAATGC 3 cut(s) 232, 355, 601
PdmI GAANNNNTTC 1 cut(s) 1200
PfeI GAWTC 6 cut(s) 197, 605, 866, 920, 1019, 1201
Pfl23II CGTACG 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 1133
PfoI TCCNGGA 2 cut(s) 303, 667
PkrI GCNGC 6 cut(s) 75, 106, 115, 118, 121, 931
PleI GAGTC 3 cut(s) 397, 502, 974
PpsI GAGTC 3 cut(s) 397, 502, 974
PshAI GACNNNNGTC 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 303, 544, 667
PspGI CCWGG 3 cut(s) 303, 544, 667
PspLI CGTACG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 129, 299
PspPI GGNCC 2 cut(s) 87, 1036
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 5 cut(s) 297, 451, 856, 1050, 1159
RsaI GTAC 3 cut(s) 60, 215, 317
RsaNI GTAC 3 cut(s) 59, 214, 316
RseI CAYNNNNRTG 4 cut(s) 714, 762, 768, 1014
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 249, 639
SatI GCNGC 6 cut(s) 74, 105, 114, 117, 120, 930
Sau3AI GATC 9 cut(s) 297, 451, 559, 856, 910, 1050, 1063, 1159, 1256
Sau96I GGNCC 2 cut(s) 87, 1036
SchI GAGTC 3 cut(s) 398, 503, 975
ScrFI CCNGG 3 cut(s) 305, 546, 669
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 2 cut(s) 796, 1228
SfcI CTRYAG 4 cut(s) 283, 311, 930, 1179
SinI GGWCC 1 cut(s) 1036
SmiMI CAYNNNNRTG 4 cut(s) 714, 762, 768, 1014
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 4 cut(s) 236, 288, 650, 1299
SseBI AGGCCT 2 cut(s) 30, 621
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 2 cut(s) 30, 621
StyD4I CCNGG 3 cut(s) 303, 544, 667
TaaI ACNGT 4 cut(s) 315, 427, 1144, 1323
TaiI ACGT 1 cut(s) 506
TaqI TCGA 3 cut(s) 195, 913, 1066
TasI AATT 4 cut(s) 236, 288, 650, 1299
TatI WGTACW 2 cut(s) 213, 315
TauI GCSGC 4 cut(s) 107, 116, 119, 122
TfiI GAWTC 6 cut(s) 197, 605, 866, 920, 1019, 1201
Tru1I TTAA 2 cut(s) 249, 639
Tru9I TTAA 2 cut(s) 249, 639
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 2 cut(s) 467, 568
TseI GCWGC 2 cut(s) 73, 929
Tsp45I GTSAC 2 cut(s) 467, 568
TspDTI ATGAA 6 cut(s) 239, 600, 896, 1059, 1209, 1295
TspGWI ACGGA 3 cut(s) 46, 143, 851
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 1133
Vha464I CTTAAG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 1036
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 2 cut(s) 7, 254
XmnI GAANNNNTTC 1 cut(s) 1200
ZraI GACGTC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.