Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006684

Physical Location & Seq

Genomic Coordinates Forward (+)

85516181 .. 85516883

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG626300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTAGGAGCACTTGGGTCAGATGTCGCCCTCGTGTGGTGGAATCGGGTCGCCGGTAGGAGCACTCGGGTCAACGATCCGCCGCGGCAGCGTCCGTCTTCTGCAGCTGAGCAGGAATCTCTCTTACGACCAAGTGGGCTGCGAGGAAGAAGGCCCTATGCTAACAATGCCGCCGCCGCCGAGGAACCAAACCCAGATGGCAACAACAAAGTCCGTGGAAGGAGTCTTAGCAACAAGGAGCTCAAAGCCCTTGTGGAATCATTTGTCCACGAGTACAGGGCAATGAATGCGGGGCAGCGGGGAAATTCCCTCCCTTTAAGTATACTCAGAGACAAGTGGGTGACAGTTACTATAGAATTAGGGGGATCCTCCAGGAGCTACAGTTCACGGCTAAGATGTCGCCCTCGTGTGGTGGAATCGGGTCGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.81

Weight (kDa)

11.28

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58210 AT5G58210 AT5G58210 AT5G58210
fragaria_vesca	FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110
malus_domestica	MD10G1047400.v1.1
prunus_persica	Prupe.8G056400_v2.0.a1
pyrus_communis	pycom10g03350
rosa_chinensis	RchiOBHm_Chr7g0218101
rosa_laevigata	RLG00000002405
rosa_multiflora	Rmu_sc0000379.1_g000020
rosa_roxburghii	Rroxscaffold_3G00241320
rosa_rugosa	Rorug07G0174000 Rorug07G0174000 Rorug07G0174000
rosa_samantha	Rh2DG626300 Rh4BG100100 Rh7AG316400 Rh7BG307500 Rh7CG333400 Rh7DG315300
rosa_wichuraiana	Rw7G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	1 cut(s)	85
AciI	CCGC	8 cut(s)	80, 83, 85, 171, 174, 177, 290, 298
AclWI	GGATC	3 cut(s)	71, 360, 373
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	36, 409
AjnI	CCWGG	1 cut(s)	371
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	3 cut(s)	107, 241, 378
AluI	AGCT	3 cut(s)	107, 241, 378
Alw21I	GWGCWC	3 cut(s)	13, 65, 243
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	3 cut(s)	71, 360, 373
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	4 cut(s)	88, 104, 139, 295
ApoI	RAATTY	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	3 cut(s)	32, 269, 405
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	3 cut(s)	13, 65, 243
BbvI	GCAGC	4 cut(s)	100, 116, 126, 307
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	324
BfmI	CTRYAG	3 cut(s)	102, 351, 379
BisI	GCNGC	9 cut(s)	83, 86, 89, 105, 140, 171, 174, 177, 296
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	9 cut(s)	84, 87, 90, 106, 141, 172, 175, 178, 297
Bme1390I	CCNGG	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	186, 367
BmrFI	CCNGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	355
Bpu1102I	GCTNAGC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	83, 180, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 409
Bse118I	RCCGGY	2 cut(s)	53, 426
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	83, 180, 214
BseLI	CCNNNNNNNGG	2 cut(s)	36, 409
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	99, 340
BseXI	GCAGC	4 cut(s)	100, 116, 126, 307
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	154
BsiHKAI	GWGCWC	3 cut(s)	13, 65, 243
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	54, 427
BslI	CCNNNNNNNGG	2 cut(s)	36, 409
BsmAI	GTCTC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	3 cut(s)	13, 65, 243
Bsp143I	GATC	2 cut(s)	76, 365
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	8 cut(s)	80, 83, 85, 171, 174, 177, 290, 298
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	100, 339
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	186, 367
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	3 cut(s)	71, 360, 373
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	2 cut(s)	53, 426
BssAI	RCCGGY	2 cut(s)	53, 426
BssECI	CCNNGG	3 cut(s)	83, 180, 214
BssMI	GATC	2 cut(s)	76, 365
BssNAI	GTATAC	1 cut(s)	323
BssSI	CACGAG	3 cut(s)	32, 269, 405
Bst1107I	GTATAC	1 cut(s)	323
Bst2BI	CACGAG	3 cut(s)	32, 269, 405
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	346, 383
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	108, 227, 326, 392
BstDSI	CCRYGG	2 cut(s)	83, 214
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	79, 368
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	76, 365
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 167, 176, 287
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	3 cut(s)	102, 351, 379
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	100, 116, 126, 307
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BstZ17I	GTATAC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	154
BtgI	CCRYGG	2 cut(s)	83, 214
Cfr10I	RCCGGY	2 cut(s)	53, 426
Cfr13I	GGNCC	1 cut(s)	153
Cfr42I	CCGCGG	1 cut(s)	86
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviJI	RGCY	7 cut(s)	107, 139, 154, 241, 248, 378, 391
CviKI_1	RGCY	7 cut(s)	107, 139, 154, 241, 248, 378, 391
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	108, 227, 326, 392
DpnI	GATC	2 cut(s)	78, 367
DpnII	GATC	2 cut(s)	76, 365
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	243
FaiI	YATR	3 cut(s)	159, 323, 353
FauI	CCCGC	2 cut(s)	283, 291
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	9 cut(s)	83, 86, 89, 105, 140, 171, 174, 177, 296
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	9 cut(s)	83, 86, 89, 105, 140, 171, 174, 177, 296
GluI	GCNGC	9 cut(s)	83, 86, 89, 105, 140, 171, 174, 177, 296
GsuI	CTGGAG	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	54, 427
HgaI	GACGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	5 cut(s)	43, 116, 223, 257, 416
HpaII	CCGG	2 cut(s)	54, 427
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	4 cut(s)	73, 268, 323, 386
Hpy188I	TCNGA	2 cut(s)	22, 329
Hpy8I	GTNNAC	4 cut(s)	73, 268, 323, 386
HpyAV	CCTTC	2 cut(s)	144, 213
HpyCH4III	ACNGT	2 cut(s)	346, 383
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 167, 176, 287
HpyF3I	CTNAG	4 cut(s)	108, 227, 326, 392
KspI	CCGCGG	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	76, 365
LmnI	GCTCC	4 cut(s)	8, 60, 238, 375
LpnPI	CCDG	6 cut(s)	67, 98, 207, 262, 358, 385
Lsp1109I	GCAGC	4 cut(s)	100, 116, 126, 307
MaeIII	GTNAC	2 cut(s)	340, 346
MalI	GATC	2 cut(s)	78, 367
MboI	GATC	2 cut(s)	76, 365
MboII	GAAGA	2 cut(s)	90, 159
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	3 cut(s)	13, 65, 243
MluCI	AATT	2 cut(s)	304, 356
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	41, 137, 175, 320, 379, 414
MseI	TTAA	1 cut(s)	317
MspA1I	CMGCKG	3 cut(s)	85, 107, 298
MspI	CCGG	2 cut(s)	54, 427
MspR9I	CCNGG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	4 cut(s)	88, 167, 176, 287
NdeII	GATC	2 cut(s)	76, 365
NlaIV	GGNNCC	2 cut(s)	186, 367
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	340
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	4 cut(s)	43, 116, 257, 416
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	9 cut(s)	84, 87, 90, 106, 141, 172, 175, 178, 297
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	186, 367
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	243
SacII	CCGCGG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	9 cut(s)	83, 86, 89, 105, 140, 171, 174, 177, 296
Sau3AI	GATC	2 cut(s)	76, 365
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	3 cut(s)	13, 65, 243
SetI	ASST	3 cut(s)	109, 243, 380
SfcI	CTRYAG	3 cut(s)	102, 351, 379
Sfr303I	CCGCGG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	304, 356
SsiI	CCGC	8 cut(s)	80, 83, 85, 171, 174, 177, 290, 298
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	346, 383
TasI	AATT	2 cut(s)	304, 356
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	5 cut(s)	85, 88, 173, 176, 179
TfiI	GAWTC	4 cut(s)	43, 116, 257, 416
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	4 cut(s)	88, 104, 139, 295
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	2 cut(s)	84, 203
XapI	RAATTY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.