Rh7CG333400

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006684
Physical Location & Seq
Reverse (-)
36973604 .. 36977262
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG333400.1

Sequence Viewer

Length: 1014 bp
ATGAGTATACAGAGCATGTTACGAAGAGGCCTCACTTTCAATCACCTCCCCAAGTCCGTACGACCAAGTGGGCTGCGAGGAAGAAGGCCCTATGCTAACAATGCCGCCGCAGCCACCGAGGAACCAAACCCAGATGGCAACAAAGTCCGTGGAAGGAGGCTTAGCAAGAAGGAGCTCAAAGCCCTTGTGGAATCATTTGTCCACGAGTACAGAGCAATGAATGCGGGGAAATTCCCTCCCTTTAAGTATACTCAGAGACAAGTGGGTGGCAGTTACTACAGAATTAGGGGGATCCTCCAGGAGCTACACTACACGGCTAAGATGTCGCCCTCGTGTGGTGGGATTGAGCATTCGTTGGGACGAGAGGGAATAAGAGGAAGTGAGTCTTTGACTGAAGTCGGAGGTGTCATTGCTCAAACTGTTTCTGAGGCGGAAAATGACACAGATCTTAGTGTTGCCAGTGACGGGTGTTTAGAAGCTGAGGAAGAGTCCCAGATGTCCTCCTCAGTTGAGATTTTGTCCGAAGAAGTTATCACTCCAGGGAGAGGTTCTGATCTGGATGTCACACAAAGTAATATCTGGAAAGTGAATGCTGAGGAATCTTCATATATAGGCTCTGACATGGAGGAACTTAAGCAAACTCAATCTGTCTCTATTGCTCCAGGATGTGAGATGTTACAAGGAGGATTTGATGTTATTTCTCATTCACATGACAAATCTGAGTATGGTAAAAGGGAGGAAGCTCAGGCTGATCGACATGATTATGTCTCTAAAGAAAAGCATCTACATATAGGGGAAACTAATAGAGCCTCTCCAAGTTCTGGTAATACTGTTGTTACTAAATCAGATCTTGATGTTTCAAAGTCTATAGTGGAGCAACATGAAGAGATTCCTCAGGCAGACAAACTATCCAAGCTGGCTGATGATGCAGAACCTCCAAAAAGATCAACAACTCTATGGGGTGCTATGAAATCGTTTGCGGATGGAATTATCAGTATTTTCAGACAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.04

Weight (kDa)

5.66

Isoelectric Point (pI)

61.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 55 - 104 1.7e-22 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 2 cut(s) 7, 248
AciI CCGC 5 cut(s) 105, 108, 224, 431, 980
AclWI GGATC 2 cut(s) 286, 299
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 60, 209
AfiI CCNNNNNNNGG 4 cut(s) 335, 465, 545, 821
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 2 cut(s) 40, 861
AjnI CCWGG 3 cut(s) 297, 538, 661
AluBI AGCT 5 cut(s) 175, 304, 479, 743, 916
AluI AGCT 5 cut(s) 175, 304, 479, 743, 916
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 3 cut(s) 250, 655, 772
AlwI GGATC 2 cut(s) 286, 299
AoxI GGCC 2 cut(s) 28, 86
ApeKI GCWGC 2 cut(s) 73, 110
ApoI RAATTY 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 888
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 894
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 2 cut(s) 203, 331
Bbv12I GWGCWC 1 cut(s) 177
BbvCI CCTCAGC 2 cut(s) 480, 594
BbvI GCAGC 2 cut(s) 60, 122
BccI CCATC 2 cut(s) 128, 977
BceAI ACGGC 1 cut(s) 330
BciT130I CCWGG 3 cut(s) 299, 540, 663
BcoDI GTCTC 3 cut(s) 250, 655, 772
BfmI CTRYAG 2 cut(s) 277, 867
BfrI CTTAAG 1 cut(s) 632
BglII AGATCT 2 cut(s) 445, 847
BisI GCNGC 4 cut(s) 74, 105, 108, 111
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 4 cut(s) 75, 106, 109, 112
Bme1390I CCNGG 3 cut(s) 299, 540, 663
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 123, 293
BmrFI CCNGG 3 cut(s) 299, 540, 663
BmsI GCATC 2 cut(s) 790, 916
BoxI GACNNNNGTC 1 cut(s) 395
BpmI CTGGAG 3 cut(s) 281, 522, 645
Bpu10I CCTNAGC 3 cut(s) 480, 594, 744
Bpu1102I GCTNAGC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 117, 148, 539
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 465, 545, 821
Bse1I ACTGG 1 cut(s) 459
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 2 cut(s) 222, 408
BseBI CCWGG 3 cut(s) 299, 540, 663
BseDI CCNNGG 3 cut(s) 117, 148, 539
BseGI GGATG 3 cut(s) 565, 671, 988
BseLI CCNNNNNNNGG 4 cut(s) 335, 465, 545, 821
BseMI GCAATG 2 cut(s) 222, 408
BseMII CTCAG 8 cut(s) 266, 417, 471, 519, 585, 711, 758, 908
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 493
BseXI GCAGC 2 cut(s) 60, 122
BshFI GGCC 2 cut(s) 30, 88
BsiHKAI GWGCWC 1 cut(s) 177
BsiWI CGTACG 1 cut(s) 58
BslFI GGGAC 2 cut(s) 372, 475
BslI CCNNNNNNNGG 4 cut(s) 335, 465, 545, 821
BsmAI GTCTC 3 cut(s) 250, 655, 772
BsmFI GGGAC 2 cut(s) 372, 475
BsmI GAATGC 3 cut(s) 226, 349, 595
BsnI GGCC 2 cut(s) 30, 88
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 6 cut(s) 291, 445, 553, 751, 847, 944
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 5 cut(s) 105, 108, 224, 431, 980
BspANI GGCC 2 cut(s) 30, 88
BspCNI CTCAG 8 cut(s) 265, 418, 472, 518, 586, 712, 757, 907
BspLI GGNNCC 2 cut(s) 123, 293
BspPI GGATC 2 cut(s) 286, 299
BspTI CTTAAG 1 cut(s) 632
BsrDI GCAATG 2 cut(s) 222, 408
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 3 cut(s) 117, 148, 539
BssMI GATC 6 cut(s) 291, 445, 553, 751, 847, 944
BssNAI GTATAC 2 cut(s) 8, 249
BssSI CACGAG 2 cut(s) 203, 331
Bst1107I GTATAC 2 cut(s) 8, 249
Bst2BI CACGAG 2 cut(s) 203, 331
Bst2UI CCWGG 3 cut(s) 299, 540, 663
Bst4CI ACNGT 3 cut(s) 421, 832, 1011
Bst6I CTCTTC 3 cut(s) 19, 480, 879
BstAFI CTTAAG 1 cut(s) 632
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 918
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 3 cut(s) 565, 671, 988
BstKTI GATC 6 cut(s) 294, 448, 556, 754, 850, 947
BstMAI GTCTC 3 cut(s) 250, 655, 772
BstMBI GATC 6 cut(s) 291, 445, 553, 751, 847, 944
BstMWI GCNNNNNNNGC 4 cut(s) 101, 110, 221, 926
BstNI CCWGG 3 cut(s) 299, 540, 663
BstNSI RCATGY 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 395
BstSCI CCNGG 3 cut(s) 297, 538, 661
BstSFI CTRYAG 2 cut(s) 277, 867
BstV1I GCAGC 2 cut(s) 60, 122
BstX2I RGATCY 3 cut(s) 291, 445, 847
BstYI RGATCY 3 cut(s) 291, 445, 847
BstZ17I GTATAC 2 cut(s) 8, 249
Bsu36I CCTNAGG 1 cut(s) 894
BsuRI GGCC 2 cut(s) 30, 88
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 3 cut(s) 565, 671, 988
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 918
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 59, 208
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 5 cut(s) 16, 622, 710, 758, 881
CviQI GTAC 2 cut(s) 59, 208
DpnI GATC 6 cut(s) 293, 447, 555, 753, 849, 946
DpnII GATC 6 cut(s) 291, 445, 553, 751, 847, 944
Eam1104I CTCTTC 3 cut(s) 19, 480, 879
EarI CTCTTC 3 cut(s) 19, 480, 879
EciI GGCGGA 1 cut(s) 446
Ecl136II GAGCTC 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 414
Eco81I CCTNAGG 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 297, 538, 661
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 5 cut(s) 19, 625, 713, 761, 884
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 2 cut(s) 372, 475
FatI CATG 5 cut(s) 15, 621, 709, 757, 880
FauI CCCGC 1 cut(s) 217
FblI GTMKAC 2 cut(s) 7, 248
Fnu4HI GCNGC 4 cut(s) 74, 105, 108, 111
FokI GGATG 3 cut(s) 572, 678, 995
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 4 cut(s) 74, 105, 108, 111
GluI GCNGC 4 cut(s) 74, 105, 108, 111
GsuI CTGGAG 3 cut(s) 281, 522, 645
HaeIII GGCC 2 cut(s) 30, 88
Hin1II CATG 5 cut(s) 19, 625, 713, 761, 884
HinfI GANTC 5 cut(s) 191, 383, 488, 599, 889
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 3 cut(s) 8, 202, 249
Hpy188I TCNGA 9 cut(s) 255, 401, 427, 523, 553, 619, 721, 847, 1004
Hpy188III TCNNGA 3 cut(s) 557, 580, 851
Hpy8I GTNNAC 3 cut(s) 8, 202, 249
HpyAV CCTTC 3 cut(s) 78, 147, 163
HpyCH4III ACNGT 3 cut(s) 421, 832, 1011
HpyCH4V TGCA 1 cut(s) 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 110, 221, 926
Hsp92II CATG 5 cut(s) 19, 625, 713, 761, 884
Kzo9I GATC 6 cut(s) 291, 445, 553, 751, 847, 944
LmnI GCTCC 4 cut(s) 172, 301, 664, 874
Lsp1109I GCAGC 2 cut(s) 60, 122
LweI GCATC 2 cut(s) 790, 916
MaeIII GTNAC 6 cut(s) 18, 272, 461, 562, 675, 835
MalI GATC 6 cut(s) 293, 447, 555, 753, 849, 946
MboI GATC 6 cut(s) 291, 445, 553, 751, 847, 944
MboII GAAGA 6 cut(s) 36, 93, 497, 536, 594, 896
MflI RGATCY 3 cut(s) 291, 445, 847
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 230, 282, 987
MlyI GAGTC 2 cut(s) 392, 497
MmeI TCCRAC 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 2 cut(s) 243, 633
MslI CAYNNNNRTG 2 cut(s) 708, 762
MspCI CTTAAG 1 cut(s) 632
MspR9I CCNGG 3 cut(s) 299, 540, 663
Mva1269I GAATGC 3 cut(s) 226, 349, 595
MvaI CCWGG 3 cut(s) 299, 540, 663
MwoI GCNNNNNNNGC 4 cut(s) 101, 110, 221, 926
NdeII GATC 6 cut(s) 291, 445, 553, 751, 847, 944
NlaIII CATG 5 cut(s) 19, 625, 713, 761, 884
NlaIV GGNNCC 2 cut(s) 123, 293
NmuCI GTSAC 2 cut(s) 461, 562
NspI RCATGY 1 cut(s) 19
PceI AGGCCT 1 cut(s) 30
PctI GAATGC 3 cut(s) 226, 349, 595
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 3 cut(s) 191, 599, 889
Pfl23II CGTACG 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 821
PfoI TCCNGGA 2 cut(s) 297, 661
PkrI GCNGC 4 cut(s) 75, 106, 109, 112
PleI GAGTC 2 cut(s) 391, 496
PpsI GAGTC 2 cut(s) 391, 496
PshAI GACNNNNGTC 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 297, 538, 661
PspGI CCWGG 3 cut(s) 297, 538, 661
PspLI CGTACG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 123, 293
PspPI GGNCC 1 cut(s) 87
PsuI RGATCY 3 cut(s) 291, 445, 847
RsaI GTAC 2 cut(s) 60, 209
RsaNI GTAC 2 cut(s) 59, 208
RseI CAYNNNNRTG 2 cut(s) 708, 762
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 243, 633
SatI GCNGC 4 cut(s) 74, 105, 108, 111
Sau3AI GATC 6 cut(s) 291, 445, 553, 751, 847, 944
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 2 cut(s) 392, 497
ScrFI CCNGG 3 cut(s) 299, 540, 663
SduI GDGCHC 1 cut(s) 177
SetI ASST 9 cut(s) 48, 177, 306, 406, 481, 550, 745, 918, 937
SfaNI GCATC 2 cut(s) 790, 916
SfcI CTRYAG 2 cut(s) 277, 867
SmiMI CAYNNNNRTG 2 cut(s) 708, 762
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 3 cut(s) 230, 282, 987
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 5 cut(s) 105, 108, 224, 431, 980
SstI GAGCTC 1 cut(s) 177
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 297, 538, 661
TaaI ACNGT 3 cut(s) 421, 832, 1011
TaqI TCGA 1 cut(s) 754
TasI AATT 3 cut(s) 230, 282, 987
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 107, 110
TfiI GAWTC 3 cut(s) 191, 599, 889
Tru1I TTAA 2 cut(s) 243, 633
Tru9I TTAA 2 cut(s) 243, 633
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 2 cut(s) 461, 562
TseI GCWGC 2 cut(s) 73, 110
Tsp45I GTSAC 2 cut(s) 461, 562
TspDTI ATGAA 4 cut(s) 233, 594, 897, 983
TspGWI ACGGA 2 cut(s) 46, 137
TspRI CASTG 1 cut(s) 466
Van91I CCANNNNNTGG 1 cut(s) 821
Vha464I CTTAAG 1 cut(s) 632
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 2 cut(s) 7, 248
XmnI GAANNNNTTC 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.