Rh7BG307500

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006684
Physical Location & Seq
Reverse (-)
29523443 .. 29527856
4414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG307500.1

Sequence Viewer

Length: 1011 bp
ATGAATGCGGGGAAATTCCCTCCCTTTAAGTATACTCAGAGACAAGTGGGTGGCAGTTACTATAGAATTAGGGGGATCCTCCAGGAGCTACAGTACACAGCTAAGATGTCGCCCTCGTGTGGTGGGATTGAGCATTCGTTGGGACGAGAGGGAATAAGAGGAAGTGAGTCTTTGACTGAAGTCGGAGGTGTCATTGCTCAAACTGTTTCTGAGGCGGAAAATGACACAGATCTTAGTGTTGCCAGTGACGGGTGTTTAGAAGCTGAGGAAGAGTCCCAGACGTCCTCCTCAGTTGAGATCTTGTCCGAAAAATTTATCACTCCAGGGAGAGGTTCTGATCTGGATGTCACGCAAAGTAATATCTGGAAAGTGAATGCTGAGGAATCTTCATATATAGGCTCTGATATGGAAGAACATAAGAAAACTCAATCGGTCTCTATTGCTCCAGGATGTGAGATGTTACAAGGAGGATCTGATGTTATTTCTCATTCACGTGACAAGTCTGAGGATGGTAAAACGGAGAAAGCTCAGACTGATCGACATGATTATGTCTCTAAAGAAAAGCATCTACAAATAGGGGAAACTAATATAGCCTCTCCAAGTTTTGATGATACGGAGGATGTTACTAAACCGGATCTTGATGATTCAGAGTGTAAAATGAAGCAACATGATGAGACCCCTCAGGCTGATCAACTTGATTCCATTGTTGCAGAAAAGCATCTACCAATAGAGGAAACTAATAGAGTCTCTTCAAGTTCTGATGATACAGGGGCTGTTACTAAACCAGATCTTGATGATTCAAAGTGTAAAATCGAGCACCATGAAGAGATCCCTCAGGCTGATCAACTTGAGTTTGTTGCTAAAGAAAAACATTTACCAATAGGGGAAACTAATAGAGCCTCTCCAAGTTCTGGTAATACTGAGGTTGTTACTAAATCAGATCTCGATGATTCAAAGTGTATAGTGGAGCAACATGAAGAGATTCCTCAAGCAGACAAACTATCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

36.8

Weight (kDa)

4.6

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 1 - 32 6.8e-13 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 911
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 8, 215
AclWI GGATC 5 cut(s) 70, 83, 478, 642, 823
AcsI RAATTY 2 cut(s) 14, 311
AcuI CTGAAG 1 cut(s) 198
AcvI CACGTG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 4 cut(s) 119, 249, 329, 911
AgsI TTSAA 3 cut(s) 753, 801, 954
AjnI CCWGG 3 cut(s) 81, 322, 445
AluBI AGCT 4 cut(s) 88, 101, 263, 527
AluI AGCT 4 cut(s) 88, 101, 263, 527
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 5 cut(s) 34, 439, 556, 668, 751
AlwI GGATC 5 cut(s) 70, 83, 478, 642, 823
AlwNI CAGNNNCTG 1 cut(s) 773
ApoI RAATTY 2 cut(s) 14, 311
Asp700I GAANNNNTTC 1 cut(s) 981
AxyI CCTNAGG 2 cut(s) 681, 834
BamHI GGATCC 1 cut(s) 75
BauI CACGAG 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 819
BbvCI CCTCAGC 2 cut(s) 264, 378
BccI CCATC 1 cut(s) 503
BciT130I CCWGG 3 cut(s) 83, 324, 447
BclI TGATCA 2 cut(s) 688, 841
BcoDI GTCTC 5 cut(s) 34, 439, 556, 668, 751
BfmI CTRYAG 2 cut(s) 61, 89
BglII AGATCT 4 cut(s) 229, 297, 787, 940
Bme1390I CCNGG 3 cut(s) 83, 324, 447
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 3 cut(s) 83, 324, 447
BmsI GCATC 2 cut(s) 574, 727
BoxI GACNNNNGTC 1 cut(s) 179
BpmI CTGGAG 3 cut(s) 65, 306, 429
Bpu10I CCTNAGC 2 cut(s) 264, 378
BpuEI CTTGAG 2 cut(s) 869, 972
BsaAI YACGTR 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 439, 668
BsaJI CCNNGG 1 cut(s) 323
BsaWI WCCGGW 1 cut(s) 631
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 249, 329, 911
Bse1I ACTGG 1 cut(s) 243
Bse21I CCTNAGG 2 cut(s) 681, 834
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 3 cut(s) 83, 324, 447
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 4 cut(s) 349, 455, 514, 625
BseLI CCNNNNNNNGG 4 cut(s) 119, 249, 329, 911
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 819
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 2 cut(s) 156, 259
BslI CCNNNNNNNGG 4 cut(s) 119, 249, 329, 911
BsmAI GTCTC 5 cut(s) 34, 439, 556, 668, 751
BsmFI GGGAC 2 cut(s) 156, 259
BsmI GAATGC 3 cut(s) 10, 133, 379
Bso31I GGTCTC 2 cut(s) 439, 668
Bsp1286I GDGCHC 1 cut(s) 819
BspACI CCGC 2 cut(s) 8, 215
BspLI GGNNCC 1 cut(s) 77
BspPI GGATC 5 cut(s) 70, 83, 478, 642, 823
BspTNI GGTCTC 2 cut(s) 439, 668
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 323
BssNAI GTATAC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 281
BssSI CACGAG 1 cut(s) 115
Bst1107I GTATAC 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 3 cut(s) 83, 324, 447
Bst4CI ACNGT 2 cut(s) 93, 205
Bst6I CTCTTC 4 cut(s) 264, 754, 819, 972
BstACI GRCGYC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 494
BstF5I GGATG 4 cut(s) 349, 455, 514, 625
BstMAI GTCTC 5 cut(s) 34, 439, 556, 668, 751
BstNI CCWGG 3 cut(s) 83, 324, 447
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 81, 322, 445
BstSFI CTRYAG 2 cut(s) 61, 89
BstX2I RGATCY 8 cut(s) 75, 229, 297, 470, 634, 787, 828, 940
BstYI RGATCY 8 cut(s) 75, 229, 297, 470, 634, 787, 828, 940
BstZ17I GTATAC 1 cut(s) 33
Bsu36I CCTNAGG 2 cut(s) 681, 834
BtsCI GGATG 4 cut(s) 349, 455, 514, 625
BtsIMutI CAGTG 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 773
Csp6I GTAC 1 cut(s) 94
CviAII CATG 4 cut(s) 542, 668, 821, 974
CviQI GTAC 1 cut(s) 94
Eam1104I CTCTTC 4 cut(s) 264, 754, 819, 972
EarI CTCTTC 4 cut(s) 264, 754, 819, 972
EciI GGCGGA 1 cut(s) 230
Eco31I GGTCTC 2 cut(s) 439, 668
Eco57I CTGAAG 1 cut(s) 198
Eco72I CACGTG 1 cut(s) 494
Eco81I CCTNAGG 2 cut(s) 681, 834
EcoRII CCWGG 3 cut(s) 81, 322, 445
FaeI CATG 4 cut(s) 545, 671, 824, 977
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 2 cut(s) 156, 259
FatI CATG 4 cut(s) 541, 667, 820, 973
FbaI TGATCA 2 cut(s) 688, 841
FblI GTMKAC 1 cut(s) 32
FokI GGATG 4 cut(s) 356, 462, 521, 632
GsuI CTGGAG 3 cut(s) 65, 306, 429
HapII CCGG 1 cut(s) 632
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 4 cut(s) 545, 671, 824, 977
HinfI GANTC 9 cut(s) 167, 272, 383, 644, 698, 744, 797, 950, 982
HpaII CCGG 1 cut(s) 632
Hpy166II GTNNAC 2 cut(s) 33, 96
Hpy188III TCNNGA 5 cut(s) 341, 364, 638, 791, 944
Hpy8I GTNNAC 2 cut(s) 33, 96
HpyCH4III ACNGT 2 cut(s) 93, 205
HpyCH4IV ACGT 2 cut(s) 281, 493
HpyCH4V TGCA 1 cut(s) 710
HpySE526I ACGT 2 cut(s) 281, 493
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 4 cut(s) 545, 671, 824, 977
Ksp22I TGATCA 2 cut(s) 688, 841
LmnI GCTCC 3 cut(s) 85, 448, 967
LweI GCATC 2 cut(s) 574, 727
MaeII ACGT 2 cut(s) 281, 493
MaeIII GTNAC 8 cut(s) 56, 245, 346, 459, 494, 622, 775, 928
MboII GAAGA 6 cut(s) 281, 378, 422, 741, 836, 989
MflI RGATCY 8 cut(s) 75, 229, 297, 470, 634, 787, 828, 940
MhlI GDGCHC 1 cut(s) 819
MluCI AATT 3 cut(s) 14, 66, 311
MlyI GAGTC 3 cut(s) 176, 281, 753
MmeI TCCRAC 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 2 cut(s) 492, 546
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 3 cut(s) 83, 324, 447
Mva1269I GAATGC 3 cut(s) 10, 133, 379
MvaI CCWGG 3 cut(s) 83, 324, 447
NlaIII CATG 4 cut(s) 545, 671, 824, 977
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 3 cut(s) 245, 346, 494
PctI GAATGC 3 cut(s) 10, 133, 379
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 6 cut(s) 383, 644, 698, 797, 950, 982
PflMI CCANNNNNTGG 1 cut(s) 911
PfoI TCCNGGA 2 cut(s) 81, 445
PleI GAGTC 3 cut(s) 175, 280, 752
PmaCI CACGTG 1 cut(s) 494
PmlI CACGTG 1 cut(s) 494
PpsI GAGTC 3 cut(s) 175, 280, 752
Ppu21I YACGTR 1 cut(s) 494
PshAI GACNNNNGTC 1 cut(s) 179
Psp6I CCWGG 3 cut(s) 81, 322, 445
PspCI CACGTG 1 cut(s) 494
PspGI CCWGG 3 cut(s) 81, 322, 445
PspN4I GGNNCC 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 8 cut(s) 75, 229, 297, 470, 634, 787, 828, 940
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 492, 546
SaqAI TTAA 1 cut(s) 27
SchI GAGTC 3 cut(s) 176, 281, 753
ScrFI CCNGG 3 cut(s) 83, 324, 447
SduI GDGCHC 1 cut(s) 819
SetI ASST 9 cut(s) 90, 103, 190, 265, 284, 334, 496, 529, 927
SfaNI GCATC 2 cut(s) 574, 727
SfcI CTRYAG 2 cut(s) 61, 89
SmiMI CAYNNNNRTG 2 cut(s) 492, 546
SmlI CTYRAG 2 cut(s) 848, 987
SmoI CTYRAG 2 cut(s) 848, 987
Sse9I AATT 3 cut(s) 14, 66, 311
SsiI CCGC 2 cut(s) 8, 215
StyD4I CCNGG 3 cut(s) 81, 322, 445
TaaI ACNGT 2 cut(s) 93, 205
TaiI ACGT 2 cut(s) 284, 496
TaqI TCGA 3 cut(s) 538, 813, 945
TaqII GACCGA 1 cut(s) 421
TasI AATT 3 cut(s) 14, 66, 311
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 6 cut(s) 383, 644, 698, 797, 950, 982
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 3 cut(s) 245, 346, 494
Tsp45I GTSAC 3 cut(s) 245, 346, 494
TspDTI ATGAA 5 cut(s) 17, 378, 674, 837, 990
TspGWI ACGGA 2 cut(s) 533, 629
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 911
XapI RAATTY 2 cut(s) 14, 311
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 981
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.