Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006684

Physical Location & Seq

Genomic Coordinates Reverse (-)

37034696 .. 37038367

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGTATACAGAGCATGTTACGAAGAGGCCTCACTTTCAATCACCTCCCCAAATCCGTACGACCAAGTGGGCTGCGAGGAAGAAGGCCCTATGCTAACAATGCCGCCGCCTCCGCCGCCAAGGAACCAAACCCAGATGGCAACAAAGTCCGTGGAAGGAGGCTTAGCAAGACGGAGCTCAAAGCCCTTGTGGAATCATTTGTCCACGAGTACAGAGCAATGAATGCGGGGAAATTCCCTCCCTTTAAGTATACTCAGAGACAAGTGGGTGGCAGTTACTATAGAATTAGGGGGATCCTCCAGGAGCTACACTACACGGCTAAGATGTCGCCCTCGTGTGGTGGGATTGAGCATTCGTTGGGACAAGAGGGAATAAGAGGAGGTGAGTCTTTGACTGAAGTCGGCGGTGTCATTGCTCAAACTGTTTCTGAGGCGGAAAATGACACAGATCTTAGTGTTGCCAGTGACGGGTGTTTAGAAGCTGAGGAAGAGTCCCAGATGTCCTCCTCAGTTGAGATTTTGTCCAAAGAAGTTATCACTCCAGGGAGAGGTTCTGATCTGGATGTCACACAAAGTAATATCTGGAAAGTGAATGCTGAGGAATCTTCATATATAGGCTCTGATATGGAGGAACTTAAGCAAACTCAATCTGTCTCTATTGCTCCAGGATGTGAGATGTTACAAGGAGGATTTGATGTTATTTCTCATTCACATGACAAATCTGAGGATGGTAAAAGGGAGGAAGCTCAGGCTGATCGACATGATTATGTCTCTAAAGAAAAGCATCTACATATAGGGGAAACTAATAGAGCCTCTCCAAGTTCTGGTAATACTGTTGTTACTAAATCAGATCTTGATGTTTCAAAGTCTATAGTGGAGCAACATGAAGAGATTCCTCAGGCAGACAAACTATCCAAGCTGGCTGATGATGCAGAACCTCCAAAAAGATCAACAACTCTATGGGGTGCTATGAAATCGTTTGCGGATGGAATTATCAGTATTTTCAGACAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

36.97

Weight (kDa)

5.76

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_AT3G52170	PF25896	56 - 105	2.8e-22	Helix-turn-helix domain in AT3G52170-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58210 AT5G58210 AT5G58210 AT5G58210
fragaria_vesca	FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110 FvH4_5g27110
malus_domestica	MD10G1047400.v1.1
prunus_persica	Prupe.8G056400_v2.0.a1
pyrus_communis	pycom10g03350
rosa_chinensis	RchiOBHm_Chr7g0218101
rosa_laevigata	RLG00000002405
rosa_multiflora	Rmu_sc0000379.1_g000020
rosa_roxburghii	Rroxscaffold_3G00241320
rosa_rugosa	Rorug07G0174000 Rorug07G0174000 Rorug07G0174000
rosa_samantha	Rh2DG626300 Rh4BG100100 Rh7AG316400 Rh7BG307500 Rh7CG333400 Rh7DG315300
rosa_wichuraiana	Rw7G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccI	GTMKAC	2 cut(s)	7, 251
AciI	CCGC	8 cut(s)	105, 108, 114, 117, 227, 405, 434, 983
AclWI	GGATC	2 cut(s)	289, 302
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	60, 212
AfiI	CCNNNNNNNGG	4 cut(s)	338, 468, 548, 824
AflII	CTTAAG	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	40, 864
AjnI	CCWGG	3 cut(s)	300, 541, 664
AluBI	AGCT	5 cut(s)	178, 307, 482, 746, 919
AluI	AGCT	5 cut(s)	178, 307, 482, 746, 919
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	253, 658, 775
AlwI	GGATC	2 cut(s)	289, 302
AoxI	GGCC	2 cut(s)	28, 86
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	891
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	35, 395
AxyI	CCTNAGG	1 cut(s)	897
BamHI	GGATCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	180
BauI	CACGAG	2 cut(s)	206, 334
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	2 cut(s)	483, 597
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	3 cut(s)	131, 722, 980
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	3 cut(s)	302, 543, 666
BcoDI	GTCTC	3 cut(s)	253, 658, 775
BfmI	CTRYAG	2 cut(s)	280, 870
BfrI	CTTAAG	1 cut(s)	635
BglII	AGATCT	2 cut(s)	448, 850
BisI	GCNGC	4 cut(s)	74, 105, 108, 117
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	4 cut(s)	75, 106, 109, 118
Bme1390I	CCNGG	3 cut(s)	302, 543, 666
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	126, 296
BmrFI	CCNGG	3 cut(s)	302, 543, 666
BmsI	GCATC	2 cut(s)	793, 919
BoxI	GACNNNNGTC	1 cut(s)	398
BpmI	CTGGAG	3 cut(s)	284, 525, 648
Bpu10I	CCTNAGC	3 cut(s)	483, 597, 747
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	120, 151, 542
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 468, 548, 824
Bse1I	ACTGG	1 cut(s)	462
Bse21I	CCTNAGG	1 cut(s)	897
Bse3DI	GCAATG	2 cut(s)	225, 411
BseBI	CCWGG	3 cut(s)	302, 543, 666
BseDI	CCNNGG	3 cut(s)	120, 151, 542
BseGI	GGATG	4 cut(s)	568, 674, 733, 991
BseLI	CCNNNNNNNGG	4 cut(s)	338, 468, 548, 824
BseMI	GCAATG	2 cut(s)	225, 411
BseMII	CTCAG	8 cut(s)	269, 420, 474, 522, 588, 714, 761, 911
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	2 cut(s)	393, 496
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	2 cut(s)	30, 88
BsiHKAI	GWGCWC	1 cut(s)	180
BsiWI	CGTACG	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	375, 478
BslI	CCNNNNNNNGG	4 cut(s)	338, 468, 548, 824
BsmAI	GTCTC	3 cut(s)	253, 658, 775
BsmFI	GGGAC	2 cut(s)	375, 478
BsmI	GAATGC	3 cut(s)	229, 352, 598
BsnI	GGCC	2 cut(s)	30, 88
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	8 cut(s)	105, 108, 114, 117, 227, 405, 434, 983
BspANI	GGCC	2 cut(s)	30, 88
BspCNI	CTCAG	8 cut(s)	268, 421, 475, 521, 589, 715, 760, 910
BspLI	GGNNCC	2 cut(s)	126, 296
BspPI	GGATC	2 cut(s)	289, 302
BspTI	CTTAAG	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	225, 411
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	120, 151, 542
BssMI	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
BssNAI	GTATAC	2 cut(s)	8, 252
BssSI	CACGAG	2 cut(s)	206, 334
BssT1I	CCWWGG	1 cut(s)	120
Bst1107I	GTATAC	2 cut(s)	8, 252
Bst2BI	CACGAG	2 cut(s)	206, 334
Bst2UI	CCWGG	3 cut(s)	302, 543, 666
Bst4CI	ACNGT	3 cut(s)	424, 835, 1014
Bst6I	CTCTTC	3 cut(s)	19, 483, 882
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	921
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	4 cut(s)	568, 674, 733, 991
BstKTI	GATC	6 cut(s)	297, 451, 559, 757, 853, 950
BstMAI	GTCTC	3 cut(s)	253, 658, 775
BstMBI	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 113, 116, 224, 929
BstNI	CCWGG	3 cut(s)	302, 543, 666
BstNSI	RCATGY	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	300, 541, 664
BstSFI	CTRYAG	2 cut(s)	280, 870
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	3 cut(s)	294, 448, 850
BstYI	RGATCY	3 cut(s)	294, 448, 850
BstZ17I	GTATAC	2 cut(s)	8, 252
Bsu36I	CCTNAGG	1 cut(s)	897
BsuRI	GGCC	2 cut(s)	30, 88
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	568, 674, 733, 991
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	921
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	59, 211
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	4 cut(s)	16, 713, 761, 884
CviQI	GTAC	2 cut(s)	59, 211
DpnI	GATC	6 cut(s)	296, 450, 558, 756, 852, 949
DpnII	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
Eam1104I	CTCTTC	3 cut(s)	19, 483, 882
EarI	CTCTTC	3 cut(s)	19, 483, 882
EciI	GGCGGA	2 cut(s)	103, 449
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	897
EcoICRI	GAGCTC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	3 cut(s)	300, 541, 664
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	19, 716, 764, 887
FaqI	GGGAC	2 cut(s)	375, 478
FatI	CATG	4 cut(s)	15, 712, 760, 883
FauI	CCCGC	1 cut(s)	220
FblI	GTMKAC	2 cut(s)	7, 251
Fnu4HI	GCNGC	4 cut(s)	74, 105, 108, 117
FokI	GGATG	4 cut(s)	575, 681, 740, 998
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	74, 105, 108, 117
GluI	GCNGC	4 cut(s)	74, 105, 108, 117
GsuI	CTGGAG	3 cut(s)	284, 525, 648
HaeIII	GGCC	2 cut(s)	30, 88
Hin1II	CATG	4 cut(s)	19, 716, 764, 887
HinfI	GANTC	5 cut(s)	194, 386, 491, 602, 892
HphI	GGTGA	2 cut(s)	35, 395
Hpy166II	GTNNAC	3 cut(s)	8, 205, 252
Hpy188I	TCNGA	7 cut(s)	258, 430, 556, 622, 724, 850, 1007
Hpy188III	TCNNGA	3 cut(s)	560, 583, 854
Hpy8I	GTNNAC	3 cut(s)	8, 205, 252
HpyAV	CCTTC	2 cut(s)	78, 150
HpyCH4III	ACNGT	3 cut(s)	424, 835, 1014
HpyCH4V	TGCA	1 cut(s)	932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 113, 116, 224, 929
Hsp92II	CATG	4 cut(s)	19, 716, 764, 887
Kzo9I	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
LmnI	GCTCC	4 cut(s)	175, 304, 667, 877
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	2 cut(s)	793, 919
MaeIII	GTNAC	6 cut(s)	18, 275, 464, 565, 678, 838
MalI	GATC	6 cut(s)	296, 450, 558, 756, 852, 949
MboI	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
MboII	GAAGA	5 cut(s)	36, 93, 500, 597, 899
MflI	RGATCY	3 cut(s)	294, 448, 850
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	3 cut(s)	233, 285, 990
MlyI	GAGTC	2 cut(s)	395, 500
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	2 cut(s)	246, 636
MslI	CAYNNNNRTG	2 cut(s)	711, 765
MspCI	CTTAAG	1 cut(s)	635
MspR9I	CCNGG	3 cut(s)	302, 543, 666
Mva1269I	GAATGC	3 cut(s)	229, 352, 598
MvaI	CCWGG	3 cut(s)	302, 543, 666
MwoI	GCNNNNNNNGC	5 cut(s)	101, 113, 116, 224, 929
NdeII	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
NlaIII	CATG	4 cut(s)	19, 716, 764, 887
NlaIV	GGNNCC	2 cut(s)	126, 296
NmuCI	GTSAC	2 cut(s)	464, 565
NspI	RCATGY	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	30
PctI	GAATGC	3 cut(s)	229, 352, 598
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	3 cut(s)	194, 602, 892
Pfl23II	CGTACG	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	824
PfoI	TCCNGGA	2 cut(s)	300, 664
PkrI	GCNGC	4 cut(s)	75, 106, 109, 118
PleI	GAGTC	2 cut(s)	394, 499
PpsI	GAGTC	2 cut(s)	394, 499
PshAI	GACNNNNGTC	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	300, 541, 664
PspGI	CCWGG	3 cut(s)	300, 541, 664
PspLI	CGTACG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	126, 296
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	3 cut(s)	294, 448, 850
RsaI	GTAC	2 cut(s)	60, 212
RsaNI	GTAC	2 cut(s)	59, 211
RseI	CAYNNNNRTG	2 cut(s)	711, 765
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	246, 636
SatI	GCNGC	4 cut(s)	74, 105, 108, 117
Sau3AI	GATC	6 cut(s)	294, 448, 556, 754, 850, 947
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	2 cut(s)	395, 500
ScrFI	CCNGG	3 cut(s)	302, 543, 666
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	48, 180, 309, 385, 484, 553, 748, 921, 940
SfaNI	GCATC	2 cut(s)	793, 919
SfcI	CTRYAG	2 cut(s)	280, 870
SmiMI	CAYNNNNRTG	2 cut(s)	711, 765
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	3 cut(s)	233, 285, 990
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	8 cut(s)	105, 108, 114, 117, 227, 405, 434, 983
SstI	GAGCTC	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	3 cut(s)	300, 541, 664
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	424, 835, 1014
TaqI	TCGA	1 cut(s)	757
TasI	AATT	3 cut(s)	233, 285, 990
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	3 cut(s)	107, 110, 119
TfiI	GAWTC	3 cut(s)	194, 602, 892
Tru1I	TTAA	2 cut(s)	246, 636
Tru9I	TTAA	2 cut(s)	246, 636
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	464, 565
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	2 cut(s)	464, 565
TspDTI	ATGAA	4 cut(s)	236, 597, 900, 986
TspGWI	ACGGA	3 cut(s)	46, 140, 188
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	824
Vha464I	CTTAAG	1 cut(s)	635
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	7, 251
XmnI	GAANNNNTTC	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.