Rh7AG316400

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006684
Physical Location & Seq
Reverse (-)
35577721 .. 35581648
3928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG316400.1

Sequence Viewer

Length: 1329 bp
ATGAGTATACAGAGCATGTTACGAAGAGGCCTCACTTTCAATCACCTCCCCAAATCCGTACGACCAAGTGGGCTGCGAGGAAGAAGGCCCTATGCTAACAATGCCGCCTCCGCCGCCGCCGCCGCCGAGGAACCAAACCCAGATGGCAACAAAGTCCGTGGAAGGAGGCTTAGCAACAAGGAGCTCAAAGCCCTTGTGGAATCATTTGTCCACGAGTACAGAGCAATGAATGCGGGGAAATTCCCTCCCTTTAAGTATACTCAGAGACAAGTGGGTGGCAGTTACTATAGAATTAGGGGAATCCTCCAGGAGCTACAGTACACGGCTAAAATGTCACCCTCGTGTGGTGGGATTGAGCATTCGTTGGGACGAGAGGGAATAAGAGGAAGTGAGTCTTTGACTGAAGTCGGAGGTGTCATTGCTCAAACTGTTTCTGAGGCGGAAAATGACACAGATCTTAGTGTTGCCAGTGACGGGTGTTTAGAAGCTGAGGAAGAGTCCCAGATGTCCTCCTCAGTTGAGATTTTGTCCGAAGAAGTTATCACTCCAGGGAGAGGTTCTGATCTGGATGTCACACAAAGTAATATCTGGAAAGTGAATGCTGAGGAATCTTCATATATAGGCCCTGATATGGAGGAACTTAAGAAAACTCAATTTGTCTCTATTGCTCCAGGATGTGAGATGTTACAAGGAGGATTTGATGTTATTTCTCATTCACATGACAAATCTGAGGATGGTAAAAGGGAGGAAGCTCAGGCTGATCAACATGATTATGTCTCTAAAGAAAAGCATCTACATATAGGGGAAACTAATCCAGCCTCTCCAAGTTCTGATGATACGGAGGATATTACTAAACCGGATCTTGATGATTCAGAGTGTAAAATGAAGCAACATGATGAGACCCCTCAGGCTGATCGACTTGATTCCATTGCTGCAGAAAAACATCTACCAATAGCGGAAACTAATAGAGTCTCTTCAAGTTCTGATGATACAGAGGATGTTACTAAACCACATCTTGATGATTCAAAGTGTAAAATGGACCAGCATGAAGAGATCCCTCAGGTTGATCGACTTGATTTTGTTGCTAAAGAAAAACATTTACCAATAGGCGAAACTAATAGAGCCTCTCCAAGTTCTGGTGATACTGTTGTTACTGAATCAGATCTTGATGTTTCAAAGTCTATAGTGGAGCAACATGAAGAGATTCCTCAGGCAGACAAACTATCCAAGCTGGCTGATGATGCAGAACCTCCAAAAAGATCAACAACTCTATGGGGTGCTATGAAATCGTTTGCGGATGGAATTATCAGTATTTTCAGACAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

442

Amino Acids

48.61

Weight (kDa)

4.9

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 59 - 107 4.2e-22 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1136
AccI GTMKAC 2 cut(s) 7, 257
AclWI GGATC 2 cut(s) 867, 1048
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 3 cut(s) 60, 218, 320
AfiI CCNNNNNNNGG 5 cut(s) 344, 474, 554, 631, 1136
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 4 cut(s) 40, 978, 1026, 1176
AjnI CCWGG 3 cut(s) 306, 547, 670
AleI CACNNNNGTG 1 cut(s) 340
AluBI AGCT 5 cut(s) 184, 313, 488, 752, 1231
AluI AGCT 5 cut(s) 184, 313, 488, 752, 1231
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 5 cut(s) 259, 664, 781, 893, 976
AlwI GGATC 2 cut(s) 867, 1048
AoxI GGCC 3 cut(s) 28, 86, 622
ApeKI GCWGC 2 cut(s) 73, 932
ApoI RAATTY 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 1203
AspS9I GGNCC 3 cut(s) 87, 623, 1039
AsuHPI GGTGA 3 cut(s) 35, 327, 1151
AvaII GGWCC 1 cut(s) 1039
AxyI CCTNAGG 3 cut(s) 906, 1059, 1209
BaeI ACNNNNGTAYC 2 cut(s) 1134, 1167
BanII GRGCYC 1 cut(s) 186
BauI CACGAG 2 cut(s) 212, 340
Bbv12I GWGCWC 1 cut(s) 186
BbvCI CCTCAGC 2 cut(s) 489, 603
BbvI GCAGC 2 cut(s) 60, 919
BccI CCATC 3 cut(s) 137, 728, 1292
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 3 cut(s) 308, 549, 672
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 5 cut(s) 259, 664, 781, 893, 976
BfmI CTRYAG 4 cut(s) 286, 314, 933, 1182
BfrI CTTAAG 1 cut(s) 641
BglII AGATCT 2 cut(s) 454, 1162
BisI GCNGC 7 cut(s) 74, 105, 114, 117, 120, 123, 933
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 7 cut(s) 75, 106, 115, 118, 121, 124, 934
Bme1390I CCNGG 3 cut(s) 308, 549, 672
Bme18I GGWCC 1 cut(s) 1039
BmgT120I GGNCC 3 cut(s) 87, 623, 1039
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 3 cut(s) 308, 549, 672
BmsI GCATC 2 cut(s) 799, 1231
BoxI GACNNNNGTC 1 cut(s) 404
BpmI CTGGAG 3 cut(s) 290, 531, 654
Bpu10I CCTNAGC 3 cut(s) 489, 603, 753
Bpu1102I GCTNAGC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 893
BsaJI CCNNGG 3 cut(s) 126, 157, 548
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 5 cut(s) 344, 474, 554, 631, 1136
Bse1I ACTGG 1 cut(s) 468
Bse21I CCTNAGG 3 cut(s) 906, 1059, 1209
Bse3DI GCAATG 3 cut(s) 231, 417, 927
BseBI CCWGG 3 cut(s) 308, 549, 672
BseDI CCNNGG 3 cut(s) 126, 157, 548
BseGI GGATG 5 cut(s) 574, 680, 739, 1003, 1303
BseLI CCNNNNNNNGG 5 cut(s) 344, 474, 554, 631, 1136
BseMI GCAATG 3 cut(s) 231, 417, 927
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 502
BseXI GCAGC 2 cut(s) 60, 919
BshFI GGCC 3 cut(s) 30, 88, 624
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 857
BsiWI CGTACG 1 cut(s) 58
BslFI GGGAC 2 cut(s) 381, 484
BslI CCNNNNNNNGG 5 cut(s) 344, 474, 554, 631, 1136
BsmAI GTCTC 5 cut(s) 259, 664, 781, 893, 976
BsmFI GGGAC 2 cut(s) 381, 484
BsmI GAATGC 3 cut(s) 235, 358, 604
BsnI GGCC 3 cut(s) 30, 88, 624
Bso31I GGTCTC 1 cut(s) 893
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
Bsp1720I GCTNAGC 1 cut(s) 170
BspANI GGCC 3 cut(s) 30, 88, 624
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 937
BspPI GGATC 2 cut(s) 867, 1048
BspTI CTTAAG 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 893
BsrDI GCAATG 3 cut(s) 231, 417, 927
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 126, 157, 548
BssMI GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
BssNAI GTATAC 2 cut(s) 8, 258
BssSI CACGAG 2 cut(s) 212, 340
Bst1107I GTATAC 2 cut(s) 8, 258
Bst2BI CACGAG 2 cut(s) 212, 340
Bst2UI CCWGG 3 cut(s) 308, 549, 672
Bst4CI ACNGT 4 cut(s) 318, 430, 1147, 1326
Bst6I CTCTTC 5 cut(s) 19, 489, 979, 1044, 1194
BstAFI CTTAAG 1 cut(s) 641
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 1233
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 5 cut(s) 574, 680, 739, 1003, 1303
BstKTI GATC 9 cut(s) 457, 565, 763, 862, 916, 1056, 1069, 1165, 1262
BstMAI GTCTC 5 cut(s) 259, 664, 781, 893, 976
BstMBI GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
BstMWI GCNNNNNNNGC 7 cut(s) 101, 110, 113, 119, 122, 230, 1241
BstNI CCWGG 3 cut(s) 308, 549, 672
BstNSI RCATGY 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 404
BstSCI CCNGG 3 cut(s) 306, 547, 670
BstSFI CTRYAG 4 cut(s) 286, 314, 933, 1182
BstV1I GCAGC 2 cut(s) 60, 919
BstX2I RGATCY 4 cut(s) 454, 859, 1053, 1162
BstYI RGATCY 4 cut(s) 454, 859, 1053, 1162
BstZ17I GTATAC 2 cut(s) 8, 258
Bsu36I CCTNAGG 3 cut(s) 906, 1059, 1209
BsuRI GGCC 3 cut(s) 30, 88, 624
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 5 cut(s) 574, 680, 739, 1003, 1303
BtsIMutI CAGTG 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 1233
Cfr13I GGNCC 3 cut(s) 87, 623, 1039
Csp6I GTAC 3 cut(s) 59, 217, 319
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 6 cut(s) 16, 719, 767, 893, 1046, 1196
CviQI GTAC 3 cut(s) 59, 217, 319
DpnI GATC 9 cut(s) 456, 564, 762, 861, 915, 1055, 1068, 1164, 1261
DpnII GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
Eam1104I CTCTTC 5 cut(s) 19, 489, 979, 1044, 1194
EarI CTCTTC 5 cut(s) 19, 489, 979, 1044, 1194
EciI GGCGGA 2 cut(s) 100, 455
Ecl136II GAGCTC 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 893
Eco47I GGWCC 1 cut(s) 1039
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 423
Eco81I CCTNAGG 3 cut(s) 906, 1059, 1209
EcoICRI GAGCTC 1 cut(s) 184
EcoO109I RGGNCCY 2 cut(s) 87, 623
EcoRII CCWGG 3 cut(s) 306, 547, 670
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 6 cut(s) 19, 722, 770, 896, 1049, 1199
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 2 cut(s) 381, 484
FatI CATG 6 cut(s) 15, 718, 766, 892, 1045, 1195
FauI CCCGC 1 cut(s) 226
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 2 cut(s) 7, 257
Fnu4HI GCNGC 7 cut(s) 74, 105, 114, 117, 120, 123, 933
FokI GGATG 5 cut(s) 581, 687, 746, 1010, 1310
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 7 cut(s) 74, 105, 114, 117, 120, 123, 933
GluI GCNGC 7 cut(s) 74, 105, 114, 117, 120, 123, 933
GsuI CTGGAG 3 cut(s) 290, 531, 654
HaeIII GGCC 3 cut(s) 30, 88, 624
HapII CCGG 1 cut(s) 857
Hin1II CATG 6 cut(s) 19, 722, 770, 896, 1049, 1199
HpaII CCGG 1 cut(s) 857
HphI GGTGA 3 cut(s) 35, 327, 1151
Hpy166II GTNNAC 4 cut(s) 8, 211, 258, 321
Hpy188III TCNNGA 5 cut(s) 566, 589, 863, 1016, 1166
Hpy8I GTNNAC 4 cut(s) 8, 211, 258, 321
HpyAV CCTTC 2 cut(s) 78, 156
HpyCH4III ACNGT 4 cut(s) 318, 430, 1147, 1326
HpyCH4V TGCA 2 cut(s) 935, 1244
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 110, 113, 119, 122, 230, 1241
Hsp92II CATG 6 cut(s) 19, 722, 770, 896, 1049, 1199
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
LmnI GCTCC 4 cut(s) 181, 310, 673, 1189
Lsp1109I GCAGC 2 cut(s) 60, 919
LweI GCATC 2 cut(s) 799, 1231
MaeIII GTNAC 8 cut(s) 18, 281, 333, 470, 571, 684, 1000, 1150
MalI GATC 9 cut(s) 456, 564, 762, 861, 915, 1055, 1068, 1164, 1261
MboI GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
MboII GAAGA 8 cut(s) 36, 93, 506, 545, 603, 966, 1061, 1211
MflI RGATCY 4 cut(s) 454, 859, 1053, 1162
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 4 cut(s) 239, 291, 653, 1302
MlyI GAGTC 3 cut(s) 401, 506, 978
MmeI TCCRAC 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 1203
MseI TTAA 2 cut(s) 252, 642
MslI CAYNNNNRTG 4 cut(s) 340, 717, 771, 1017
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 1 cut(s) 857
MspR9I CCNGG 3 cut(s) 308, 549, 672
Mva1269I GAATGC 3 cut(s) 235, 358, 604
MvaI CCWGG 3 cut(s) 308, 549, 672
MwoI GCNNNNNNNGC 7 cut(s) 101, 110, 113, 119, 122, 230, 1241
NdeII GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
NlaIII CATG 6 cut(s) 19, 722, 770, 896, 1049, 1199
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 3 cut(s) 333, 470, 571
NspI RCATGY 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 340
PceI AGGCCT 1 cut(s) 30
PctI GAATGC 3 cut(s) 235, 358, 604
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 8 cut(s) 200, 300, 608, 869, 923, 1022, 1157, 1204
Pfl23II CGTACG 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 1136
PfoI TCCNGGA 2 cut(s) 306, 670
PkrI GCNGC 7 cut(s) 75, 106, 115, 118, 121, 124, 934
PleI GAGTC 3 cut(s) 400, 505, 977
PpsI GAGTC 3 cut(s) 400, 505, 977
PshAI GACNNNNGTC 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 3 cut(s) 306, 547, 670
PspGI CCWGG 3 cut(s) 306, 547, 670
PspLI CGTACG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 87, 623, 1039
PstI CTGCAG 1 cut(s) 937
PsuI RGATCY 4 cut(s) 454, 859, 1053, 1162
RsaI GTAC 3 cut(s) 60, 218, 320
RsaNI GTAC 3 cut(s) 59, 217, 319
RseI CAYNNNNRTG 4 cut(s) 340, 717, 771, 1017
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 252, 642
SatI GCNGC 7 cut(s) 74, 105, 114, 117, 120, 123, 933
Sau3AI GATC 9 cut(s) 454, 562, 760, 859, 913, 1053, 1066, 1162, 1259
Sau96I GGNCC 3 cut(s) 87, 623, 1039
SchI GAGTC 3 cut(s) 401, 506, 978
ScrFI CCNGG 3 cut(s) 308, 549, 672
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 2 cut(s) 799, 1231
SfcI CTRYAG 4 cut(s) 286, 314, 933, 1182
SinI GGWCC 1 cut(s) 1039
SmiMI CAYNNNNRTG 4 cut(s) 340, 717, 771, 1017
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 4 cut(s) 239, 291, 653, 1302
SseBI AGGCCT 1 cut(s) 30
SstI GAGCTC 1 cut(s) 186
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 306, 547, 670
TaaI ACNGT 4 cut(s) 318, 430, 1147, 1326
TaqI TCGA 2 cut(s) 916, 1069
TasI AATT 4 cut(s) 239, 291, 653, 1302
TatI WGTACW 2 cut(s) 216, 318
TauI GCSGC 5 cut(s) 107, 116, 119, 122, 125
TfiI GAWTC 8 cut(s) 200, 300, 608, 869, 923, 1022, 1157, 1204
Tru1I TTAA 2 cut(s) 252, 642
Tru9I TTAA 2 cut(s) 252, 642
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 3 cut(s) 333, 470, 571
TseI GCWGC 2 cut(s) 73, 932
Tsp45I GTSAC 3 cut(s) 333, 470, 571
TspDTI ATGAA 6 cut(s) 242, 603, 899, 1062, 1212, 1298
TspGWI ACGGA 3 cut(s) 46, 146, 854
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 1136
Vha464I CTTAAG 1 cut(s) 641
VpaK11BI GGWCC 1 cut(s) 1039
XapI RAATTY 1 cut(s) 239
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 2 cut(s) 7, 257
XmnI GAANNNNTTC 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.