FvH4_5g27110

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006684
Physical Location & Seq
Reverse (-)
18390601 .. 18394492
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27110.t1

Sequence Viewer

Length: 1071 bp
ATGAGTCTACAGAGCATGCTACGAAGAGCCCTCACCTTCAATCACCTCCCCAAGTCCGTACTGCCAAGTGGGCTGCGTGGAAGAAGGCCCTATGCTAGTAATGCTGCCGCTGCCGCCGAGGAACCAAACCCAGATGGTAACAAGGTCCGTGGAAGGAGGCGTAGCAAGAAGGAGCTCCATGCTGTTGTGGAAACGGTTGTCAATGAGTACAAGGCAATGAATGCGGGGAAATTCCCTGGGATTAAGTATACTAAGAAACAAGTGGGTGGCTGTTACTATAGAATTCGGGGGATCCTCCAGGAGCTACAGTACGCAGCTAAGATGTCGCCTTCTAGTGGTGGGGTTGAGCATTCGTTGGGACGAGAGGGAACTAGAGGAAGTGAGTCTTTGACTGATGTTGTTGGTGTCAGTGCTCAAACTGTTTCTGAGGTGGAAGATGACGTGGATCTTGGCGTTGTCAGTGATGGGAGTTTCGAAGCTAAGGAAGAGTCCATGACGTCCTCCTCAGTTGAGATCTTGTCTGAAGAGGGGAGAGGCTCTGATCTGGATGTCACACAAAGTAATATTGGGAAAGTGAATGCTGCGGAATCTTCATATATAGACCCTGATATAGTTGGCAATGATATGGAGGAACATACAAACAATCAATCTGTCTCTATGGCTCCAGGACATGAGATTTTACAAGGAGGATTTGAGGTTATTTCTCATTCACGTGACAAATCTCATGATAAACCAGAGGAAGCTCAGGCTGATCTACATGATGATGTCTCTAAAGTAAAGCATCTACAAATAGGGGACAATAATACAGCCTCTCTAAGTTCTGAGTATATGGAGGATGTTACTAAACCGGATCTTGAAGAGTGTAAAAAGAAGCAACATGAAGAGATCCCTAAGGCTGATCTACTGGATTCCATTACTGCAGAAAAACATGTACCACCAGAGGCAGATAAAGTATCCAAGGACCTCCCTGGTAGGCCAGCTGCTGATGCCGAACCTCCGAAAACAACAACTCTATGGGGTGCTGTGAAATCTTTGGCGGATGGAATTATCAGTATTTTCAGAAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

38.62

Weight (kDa)

5.27

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 55 - 104 1.6e-19 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
AccI GTMKAC 2 cut(s) 7, 248
AciI CCGC 5 cut(s) 108, 114, 224, 584, 1037
AclWI GGATC 5 cut(s) 286, 299, 453, 858, 880
AcsI RAATTY 2 cut(s) 230, 282
AcuI CTGAAG 1 cut(s) 543
AcvI CACGTG 1 cut(s) 713
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 4 cut(s) 60, 209, 311, 933
AfiI CCNNNNNNNGG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 928
AgsI TTSAA 2 cut(s) 40, 857
AjiI CACGTC 1 cut(s) 442
AjnI CCWGG 4 cut(s) 235, 297, 664, 967
AluBI AGCT 6 cut(s) 175, 304, 317, 479, 743, 980
AluI AGCT 6 cut(s) 175, 304, 317, 479, 743, 980
Alw21I GWGCWC 2 cut(s) 177, 415
Alw26I GTCTC 2 cut(s) 658, 772
AlwI GGATC 5 cut(s) 286, 299, 453, 858, 880
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 2 cut(s) 86, 974
ApeKI GCWGC 6 cut(s) 73, 104, 110, 314, 581, 980
ApoI RAATTY 2 cut(s) 230, 282
AspS9I GGNCC 3 cut(s) 87, 145, 961
AsuHPI GGTGA 2 cut(s) 25, 35
AsuII TTCGAA 1 cut(s) 474
AvaII GGWCC 2 cut(s) 145, 961
AxyI CCTNAGG 1 cut(s) 891
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 2 cut(s) 31, 177
BbrPI CACGTG 1 cut(s) 713
Bbv12I GWGCWC 2 cut(s) 177, 415
BbvI GCAGC 6 cut(s) 60, 91, 97, 326, 568, 967
BccI CCATC 3 cut(s) 128, 458, 1034
BciT130I CCWGG 4 cut(s) 237, 299, 666, 969
BciVI GTATCC 1 cut(s) 964
BcoDI GTCTC 2 cut(s) 658, 772
BfaI CTAG 3 cut(s) 96, 333, 372
BfmI CTRYAG 4 cut(s) 8, 277, 305, 918
BfuI GTATCC 1 cut(s) 964
BglI GCCNNNNNGGC 1 cut(s) 70
BglII AGATCT 1 cut(s) 513
BisI GCNGC 8 cut(s) 74, 105, 108, 111, 114, 315, 582, 981
BlsI GCNGC 8 cut(s) 75, 106, 109, 112, 115, 316, 583, 982
Bme1390I CCNGG 4 cut(s) 237, 299, 666, 969
Bme18I GGWCC 2 cut(s) 145, 961
BmgBI CACGTC 1 cut(s) 442
BmgT120I GGNCC 3 cut(s) 87, 145, 961
BmiI GGNNCC 3 cut(s) 123, 293, 663
BmrFI CCNGG 4 cut(s) 237, 299, 666, 969
BmsI GCATC 2 cut(s) 790, 976
BpmI CTGGAG 2 cut(s) 281, 648
Bpu10I CCTNAGC 2 cut(s) 480, 744
Bpu14I TTCGAA 1 cut(s) 474
BsaAI YACGTR 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 6 cut(s) 117, 148, 235, 236, 957, 967
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 909
Bse21I CCTNAGG 1 cut(s) 891
Bse3DI GCAATG 2 cut(s) 222, 625
BseBI CCWGG 4 cut(s) 237, 299, 666, 969
BseDI CCNNGG 6 cut(s) 117, 148, 235, 236, 957, 967
BseGI GGATG 3 cut(s) 553, 841, 1045
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 2 cut(s) 222, 625
BseMII CTCAG 4 cut(s) 417, 519, 758, 813
BseNI ACTGG 1 cut(s) 909
BseRI GAGGAG 1 cut(s) 493
BseXI GCAGC 6 cut(s) 60, 91, 97, 326, 568, 967
BshFI GGCC 2 cut(s) 88, 976
BsiHKAI GWGCWC 2 cut(s) 177, 415
BsiSI CCGG 1 cut(s) 848
BslFI GGGAC 2 cut(s) 372, 809
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 658, 772
BsmFI GGGAC 2 cut(s) 372, 809
BsmI GAATGC 3 cut(s) 226, 349, 583
BsnI GGCC 2 cut(s) 88, 976
Bsp119I TTCGAA 1 cut(s) 474
Bsp1286I GDGCHC 3 cut(s) 31, 177, 415
Bsp143I GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
BspACI CCGC 5 cut(s) 108, 114, 224, 584, 1037
BspANI GGCC 2 cut(s) 88, 976
BspCNI CTCAG 4 cut(s) 418, 518, 757, 814
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 3 cut(s) 123, 293, 663
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 5 cut(s) 286, 299, 453, 858, 880
BspQI GCTCTTC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 222, 625
BsrI ACTGG 1 cut(s) 909
BssECI CCNNGG 6 cut(s) 117, 148, 235, 236, 957, 967
BssMI GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
BssNAI GTATAC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 957
Bst1107I GTATAC 1 cut(s) 249
Bst2UI CCWGG 4 cut(s) 237, 299, 666, 969
Bst4CI ACNGT 3 cut(s) 196, 309, 421
Bst6I CTCTTC 5 cut(s) 19, 480, 519, 852, 876
BstACI GRCGYC 1 cut(s) 497
BstAPI GCANNNNNTGC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 713
BstBI TTCGAA 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 17, 978
BstDEI CTNAG 9 cut(s) 252, 318, 426, 480, 505, 744, 815, 822, 891
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 3 cut(s) 553, 841, 1045
BstKTI GATC 8 cut(s) 294, 448, 516, 544, 754, 853, 888, 901
BstMAI GTCTC 2 cut(s) 658, 772
BstMBI GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
BstMWI GCNNNNNNNGC 6 cut(s) 70, 101, 110, 113, 221, 986
BstNI CCWGG 4 cut(s) 237, 299, 666, 969
BstNSI RCATGY 2 cut(s) 19, 932
BstSCI CCNGG 4 cut(s) 235, 297, 664, 967
BstSFI CTRYAG 4 cut(s) 8, 277, 305, 918
BstV1I GCAGC 6 cut(s) 60, 91, 97, 326, 568, 967
BstX2I RGATCY 5 cut(s) 291, 445, 513, 850, 885
BstYI RGATCY 5 cut(s) 291, 445, 513, 850, 885
BstZ17I GTATAC 1 cut(s) 249
Bsu36I CCTNAGG 1 cut(s) 891
BsuI GTATCC 1 cut(s) 964
BsuRI GGCC 2 cut(s) 88, 976
BtgI CCRYGG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 3 cut(s) 553, 841, 1045
BtsIMutI CAGTG 2 cut(s) 415, 466
Cac8I GCNNGC 2 cut(s) 17, 978
CaiI CAGNNNCTG 1 cut(s) 983
CciI TCATGA 1 cut(s) 724
Cfr13I GGNCC 3 cut(s) 87, 145, 961
Csp6I GTAC 4 cut(s) 59, 208, 310, 932
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 8 cut(s) 16, 179, 493, 671, 725, 758, 878, 929
CviQI GTAC 4 cut(s) 59, 208, 310, 932
DdeI CTNAG 9 cut(s) 252, 318, 426, 480, 505, 744, 815, 822, 891
DpnI GATC 8 cut(s) 293, 447, 515, 543, 753, 852, 887, 900
DpnII GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
Eam1104I CTCTTC 5 cut(s) 19, 480, 519, 852, 876
EarI CTCTTC 5 cut(s) 19, 480, 519, 852, 876
EciI GGCGGA 1 cut(s) 1052
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 957
Eco24I GRGCYC 2 cut(s) 31, 177
Eco47I GGWCC 2 cut(s) 145, 961
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 543
Eco72I CACGTG 1 cut(s) 713
Eco81I CCTNAGG 1 cut(s) 891
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 2 cut(s) 87, 961
EcoRI GAATTC 1 cut(s) 282
EcoRII CCWGG 4 cut(s) 235, 297, 664, 967
EcoT14I CCWWGG 1 cut(s) 957
EcoT38I GRGCYC 2 cut(s) 31, 177
ErhI CCWWGG 1 cut(s) 957
FaeI CATG 8 cut(s) 19, 182, 496, 674, 728, 761, 881, 932
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 2 cut(s) 372, 809
FatI CATG 8 cut(s) 15, 178, 492, 670, 724, 757, 877, 928
FauI CCCGC 1 cut(s) 217
FblI GTMKAC 2 cut(s) 7, 248
Fnu4HI GCNGC 8 cut(s) 74, 105, 108, 111, 114, 315, 582, 981
FokI GGATG 3 cut(s) 560, 848, 1052
FriOI GRGCYC 2 cut(s) 31, 177
Fsp4HI GCNGC 8 cut(s) 74, 105, 108, 111, 114, 315, 582, 981
FspBI CTAG 3 cut(s) 96, 333, 372
GluI GCNGC 8 cut(s) 74, 105, 108, 111, 114, 315, 582, 981
GsuI CTGGAG 2 cut(s) 281, 648
HaeIII GGCC 2 cut(s) 88, 976
HapII CCGG 1 cut(s) 848
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 8 cut(s) 19, 182, 496, 674, 728, 761, 881, 932
HinfI GANTC 5 cut(s) 4, 383, 488, 587, 908
HpaII CCGG 1 cut(s) 848
HphI GGTGA 2 cut(s) 25, 35
Hpy166II GTNNAC 2 cut(s) 8, 249
Hpy188I TCNGA 6 cut(s) 427, 523, 541, 823, 999, 1061
Hpy188III TCNNGA 3 cut(s) 545, 725, 854
Hpy8I GTNNAC 2 cut(s) 8, 249
HpyAV CCTTC 5 cut(s) 46, 78, 147, 163, 339
HpyCH4III ACNGT 3 cut(s) 196, 309, 421
HpyCH4IV ACGT 3 cut(s) 441, 497, 712
HpyCH4V TGCA 1 cut(s) 920
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 101, 110, 113, 221, 986
HpyF3I CTNAG 9 cut(s) 252, 318, 426, 480, 505, 744, 815, 822, 891
HpySE526I ACGT 3 cut(s) 441, 497, 712
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 8 cut(s) 19, 182, 496, 674, 728, 761, 881, 932
Kzo9I GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 4 cut(s) 172, 180, 301, 667
Lsp1109I GCAGC 6 cut(s) 60, 91, 97, 326, 568, 967
LweI GCATC 2 cut(s) 790, 976
MaeI CTAG 3 cut(s) 96, 333, 372
MaeII ACGT 3 cut(s) 441, 497, 712
MaeIII GTNAC 5 cut(s) 137, 272, 550, 713, 838
MalI GATC 8 cut(s) 293, 447, 515, 543, 753, 852, 887, 900
MboI GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
MboII GAAGA 8 cut(s) 36, 93, 446, 497, 536, 582, 869, 893
MflI RGATCY 5 cut(s) 291, 445, 513, 850, 885
MhlI GDGCHC 3 cut(s) 31, 177, 415
MluCI AATT 3 cut(s) 230, 282, 1044
MlyI GAGTC 3 cut(s) 13, 392, 497
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 2 cut(s) 711, 762
MspA1I CMGCKG 2 cut(s) 110, 980
MspI CCGG 1 cut(s) 848
MspR9I CCNGG 4 cut(s) 237, 299, 666, 969
Mva1269I GAATGC 3 cut(s) 226, 349, 583
MvaI CCWGG 4 cut(s) 237, 299, 666, 969
MwoI GCNNNNNNNGC 6 cut(s) 70, 101, 110, 113, 221, 986
NdeII GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
NlaIII CATG 8 cut(s) 19, 182, 496, 674, 728, 761, 881, 932
NlaIV GGNNCC 3 cut(s) 123, 293, 663
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 550, 713
NspI RCATGY 2 cut(s) 19, 932
NspV TTCGAA 1 cut(s) 474
PaeI GCATGC 1 cut(s) 19
PagI TCATGA 1 cut(s) 724
PasI CCCWGGG 1 cut(s) 236
PciI ACATGT 1 cut(s) 928
PciSI GCTCTTC 1 cut(s) 19
PctI GAATGC 3 cut(s) 226, 349, 583
PfeI GAWTC 2 cut(s) 587, 908
PfoI TCCNGGA 2 cut(s) 297, 664
PkrI GCNGC 8 cut(s) 75, 106, 109, 112, 115, 316, 583, 982
PleI GAGTC 3 cut(s) 12, 391, 496
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 3 cut(s) 12, 391, 496
Ppu21I YACGTR 1 cut(s) 713
PpuMI RGGWCCY 1 cut(s) 961
PscI ACATGT 1 cut(s) 928
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 961
Psp6I CCWGG 4 cut(s) 235, 297, 664, 967
PspCI CACGTG 1 cut(s) 713
PspGI CCWGG 4 cut(s) 235, 297, 664, 967
PspN4I GGNNCC 3 cut(s) 123, 293, 663
PspPI GGNCC 3 cut(s) 87, 145, 961
PspPPI RGGWCCY 1 cut(s) 961
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 5 cut(s) 291, 445, 513, 850, 885
PvuII CAGCTG 1 cut(s) 980
RsaI GTAC 4 cut(s) 60, 209, 311, 933
RsaNI GTAC 4 cut(s) 59, 208, 310, 932
RseI CAYNNNNRTG 2 cut(s) 711, 762
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 8 cut(s) 74, 105, 108, 111, 114, 315, 582, 981
Sau3AI GATC 8 cut(s) 291, 445, 513, 541, 751, 850, 885, 898
Sau96I GGNCC 3 cut(s) 87, 145, 961
SchI GAGTC 3 cut(s) 13, 392, 497
ScrFI CCNGG 4 cut(s) 237, 299, 666, 969
SduI GDGCHC 3 cut(s) 31, 177, 415
SfaNI GCATC 2 cut(s) 790, 976
SfcI CTRYAG 4 cut(s) 8, 277, 305, 918
SfuI TTCGAA 1 cut(s) 474
SinI GGWCC 2 cut(s) 145, 961
SmiMI CAYNNNNRTG 2 cut(s) 711, 762
SphI GCATGC 1 cut(s) 19
Sse9I AATT 3 cut(s) 230, 282, 1044
SsiI CCGC 5 cut(s) 108, 114, 224, 584, 1037
SspI AATATT 1 cut(s) 565
SspMI CTAG 3 cut(s) 96, 333, 372
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 4 cut(s) 235, 297, 664, 967
StyI CCWWGG 1 cut(s) 957
TaaI ACNGT 3 cut(s) 196, 309, 421
TaiI ACGT 3 cut(s) 444, 500, 715
TaqI TCGA 1 cut(s) 474
TasI AATT 3 cut(s) 230, 282, 1044
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 110, 116
TfiI GAWTC 2 cut(s) 587, 908
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 415, 466
TseFI GTSAC 2 cut(s) 550, 713
TseI GCWGC 6 cut(s) 73, 104, 110, 314, 581, 980
Tsp45I GTSAC 2 cut(s) 550, 713
TspDTI ATGAA 3 cut(s) 233, 582, 894
TspGWI ACGGA 2 cut(s) 46, 137
TspRI CASTG 2 cut(s) 415, 466
VpaK11BI GGWCC 2 cut(s) 145, 961
XapI RAATTY 2 cut(s) 230, 282
XceI RCATGY 2 cut(s) 19, 932
XmiI GTMKAC 2 cut(s) 7, 248
XspI CTAG 3 cut(s) 96, 333, 372
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.