AT5G60170

nucleic acid binding nucleotide binding protein binding zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001311
Physical Location & Seq
Forward (+)
24227415 .. 24232873
5459 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60170.2

Sequence Viewer

Length: 2958 bp
ATGAGTGACCATGGTGAGAAGACTTGTCCACTTTGTGCTGAAGAGATGGATCTGACTGATCAACAATTGAAGCCTTGCAAATGTGGTTATCAGATTTGTGTTTGGTGCTGGCATCACATAGTGGACATGGCAGAGAAAGATCAAATAGAAGGGCGTTGTCCAGCTTGTCGCACTCCATATGACAAAGAAAAGATTGTAGGGATGACTGTTAATTGTGACAGTCTGGCTTCTGAAGGCAATATGGAGCGCAAGAAGATCCAGAAGTCAAAATCAAAATCTTCTGAAGGGAGAAAGCAACAACTCACCAGTGTGCGAGTGATCCAGAGGAATCTTGTTTACATTGTTGGGTTGCCTCTTAATCTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAGTTCTAAAGGTTTCCATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAACAATACATGCAGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAAGCTGTTCATGGGTTTATCTTGGATGGTAAACCATTGAAGGCATGTTTTGGGACAACCAAGTATTGTCATGCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTCTATTTGCACGAGGTTGGTTCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGAGTTCAACAAATCACTGGAGCAACAAATATTCTGCAGCACCATTCAGGGAACATGCTACCTCCACCACTGGATGCTTATTGCAGTGACAGTTCTTCTGCAAAACCAATTATAAAGGTTCCTTCAACTAATGCAACTAGTGTTCCCAGGTATTCTCCGCCAAGTGGGAGTGGGAGCTCCAGCAGATCCACTGCCCTTCCTGCTGCAGCGTCATGGGGGACACATCAGTCTTTAGCAACTTCGGTCACCTCAAATGGATCTTCTGATATACAAAGATCAACATCAGTGAATGGAACCTTACCCTTTTCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATCCTCTAATGACATTCTTAAAAGACCATCTCGCAAAGAAGAAAGCCAAATAGTTATGGACAAAGTCAAACCTAGTGTGTTGAAGCCCTTGCAGCATAATGTTGTGGTTTCTGGGTCCGAGAGAATTACCGCACCCGATAGAGATCCTACTAGCAATCGTTTATCCAGTTCAGTAGACTCTGCCTACGGAGGCAGAGACATTGACCAGCCTTCAGCCTACAGTGGCAGAGACATTGACAAGCCTTCATCTACTGTTAGCTCGTTTGATGCTGCAAATGAAGCTGTAGAAGATGTCCCTACTGTAAGCAACTTGTTGGATGGTGTTGCATGCATGCGGATAACTATGAATTGTAGGGATGAACGTCCTGATATTACAATGGCGATTGGTAGTCAAAGTGATCAAGGTTCTATTAGACAACCTGGTTCTGAAGTATCAAAGTTGCCAGATTTAGAGCAATGTAGGATAGATAGTTCTATAAACACTGATAAGAAAGCTATCTCGTTAGAGGATAGGATCCCCCGCACTAGGCCAGGGTGGGATTGGATATCAGATTTGCAATCGCAAATGCAAGGAAGCTCTAAATTGCAAGTGGAGGATATATCAACATTGGATAGCCAACGGCCTCACCCTGAAGAGGATATTATCCACTCGCGGTTGCTGTCTAATTTGTCAAGTTCCAGTTTGGATACAAATCATATGGCTTCTCGTTCTTCCCTACCTTGTGAAGTTAGGGGCAGTGATAGATTGCATCTTCCAAATGGATTTGGTGAGAAATCCATGTCCAGTGTGGAGCACTCTCTGTTCGCAAATGAAGGCAGGAACAAAGTCAACAATGCAGAGGATGCTATACTTTCAAACATTTTGTCACTCGATTTTGATCCATGGGATGAATCCTTGACTTCTCCCCACAATTTGGCAGAGTTACTAGGTGAAGTTGATCAGCGATCTAGTACTCTTAAACCTTCAAACTTCCTAAAGCAACATAACAACCAGTCTAGATTTTCTTTTGCACGGTATGAAGAATCTAGTAATCAAGCATATGACAGTGAGAACTATAGCATTTATGGGCAGTTGTCAAGAGATAAACCTATTCAGGAGTCTGCCATGAGCCGAGATATCTATCGAAATAACCTTGGGAGTGTAAATGGATTTGCTTCAAACTTCGCTGGTGGATTGGATAACTTTGCCGCTAGTCCTTTATTTTCTTCGCACAAGAATCCTGTTTCACGACCTCAAGTTTCTGCGCCTCCAGGATTTTCTGCTCCCAACAGGCTACCTCCTCCTGGCTTCTCGTCACATGAAAGAGTGGGCCTATCATCAGATACTACACTAGGAAATCGATTTCTTGACTCTACTTCATTGAGGAATGCATATCAAGTACCACCTCCAGTTGGTAATTCAAATGGTGCAAGTGATATCGACTTTGTGGATCCTGCAATTCTAGCTGTTGGAAGAGGGATGGTAAATGCTGACTTGGACATGAGATCAGGATTCTCATCACAACTGAATTCTTTTGAAAACGAAACAGGACTCCATATGTTGAGACAGCAGTCTCTGTCTTCTGCACAACAAGTTAATGGGTTTCATCATGATCTCAGAAACTTATCTCCTTCACTTAACGACCCTTACGGATTTAGCTCAAGGCTTATGGATCAAACACAGGGAAGTAGCTTGTCTCCTTTCTCACAGCTCCCAAGACAACAACCATCTGCAAATTCAATCTTGTCCAATGGTCATCACTGGGATAAGTGGAATGAAGGGCAAAGTGTGAACAATATAGGCATGGCCGAGCTTCTTAGGAATGAACGGCTGGGTTTTAATGGGAGCTTATACAACAACGGATATGAAGAACCAAAATTCCGGATTCCAAGTCCCGGTGATGTGTATAACAGGACATATGGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

985

Amino Acids

108.01

Weight (kDa)

5.88

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 9 - 61 1.3e-19 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
AasI GACNNNNNNGTC 1 cut(s) 934
AccB7I CCANNNNNTGG 1 cut(s) 1963
AccI GTMKAC 1 cut(s) 1224
AccII CGCG 1 cut(s) 1702
AccIII TCCGGA 1 cut(s) 2910
AciI CCGC 6 cut(s) 866, 1179, 1384, 1570, 1702, 2238
AcoI YGGCCR 1 cut(s) 2835
AcsI RAATTY 3 cut(s) 2557, 2764, 2906
AcuI CTGAAG 6 cut(s) 60, 252, 303, 1245, 1497, 1701
AdeI CACNNNGTG 2 cut(s) 35, 121
AfaI GTAC 2 cut(s) 2002, 2430
AfiI CCNNNNNNNGG 7 cut(s) 872, 1575, 1684, 1963, 2333, 2441, 2924
AhlI ACTAGT 1 cut(s) 845
AjnI CCWGG 5 cut(s) 854, 1468, 1579, 2299, 2332
AleI CACNNNNGTG 1 cut(s) 308
AloI GAACNNNNNNTCC 4 cut(s) 1504, 1536, 2892, 2924
Alw21I GWGCWC 2 cut(s) 887, 1845
Alw26I GTCTC 6 cut(s) 644, 1239, 1272, 2587, 2607, 2730
AlwNI CAGNNNCTG 2 cut(s) 446, 2605
Aor13HI TCCGGA 1 cut(s) 2910
AoxI GGCC 5 cut(s) 1043, 1577, 1670, 2359, 2835
ApeKI GCWGC 7 cut(s) 522, 745, 911, 914, 1034, 1141, 1319
ApoI RAATTY 3 cut(s) 2557, 2764, 2906
ArsI GACNNNNNNTTYG 2 cut(s) 1898, 1930
AspLEI GCGC 2 cut(s) 249, 2296
AspS9I GGNCC 3 cut(s) 1043, 1164, 2359
AsuC2I CCSGG 1 cut(s) 2925
AsuHPI GGTGA 7 cut(s) 26, 295, 946, 1667, 1829, 1991, 2939
AvaII GGWCC 1 cut(s) 1164
BamHI GGATCC 2 cut(s) 1563, 2479
BanII GRGCYC 1 cut(s) 887
BauI CACGAG 1 cut(s) 650
BbsI GAAGAC 2 cut(s) 26, 2601
Bbv12I GWGCWC 2 cut(s) 887, 1845
BbvI GCAGC 7 cut(s) 509, 757, 898, 926, 1046, 1153, 1306
BccI CCATC 6 cut(s) 40, 548, 1084, 1361, 2503, 2764
BceAI ACGGC 2 cut(s) 1685, 2873
BciT130I CCWGG 5 cut(s) 856, 1470, 1581, 2301, 2334
BciVI GTATCC 2 cut(s) 1060, 1729
BclI TGATCA 3 cut(s) 58, 1447, 1987
BcnI CCSGG 1 cut(s) 2925
BcoDI GTCTC 6 cut(s) 644, 1239, 1272, 2587, 2607, 2730
BcuI ACTAGT 1 cut(s) 845
BfmI CTRYAG 5 cut(s) 743, 912, 1267, 1332, 2104
BfuI GTATCC 2 cut(s) 1060, 1729
BglII AGATCT 1 cut(s) 373
BisI GCNGC 8 cut(s) 523, 746, 912, 915, 1035, 1142, 1320, 2238
BlsI GCNGC 8 cut(s) 524, 747, 913, 916, 1036, 1143, 1321, 2239
BmcAI AGTACT 1 cut(s) 2002
Bme1390I CCNGG 6 cut(s) 856, 1470, 1581, 2301, 2334, 2925
Bme18I GGWCC 1 cut(s) 1164
BmgT120I GGNCC 3 cut(s) 1043, 1164, 2359
BmiI GGNNCC 5 cut(s) 828, 1003, 1165, 1565, 2481
BmrFI CCNGG 6 cut(s) 856, 1470, 1581, 2301, 2334, 2925
BmrI ACTGGG 1 cut(s) 2800
BmsI GCATC 6 cut(s) 121, 452, 772, 1306, 1807, 1882
BmuI ACTGGG 1 cut(s) 2800
BoxI GACNNNNGTC 1 cut(s) 2599
BpiI GAAGAC 2 cut(s) 26, 2601
BpmI CTGGAG 4 cut(s) 747, 871, 2283, 2421
BpuEI CTTGAG 3 cut(s) 648, 2268, 2674
BpuMI CCSGG 1 cut(s) 2925
Bsa29I ATCGAT 1 cut(s) 2389
BsaBI GATNNNNATC 7 cut(s) 372, 988, 1191, 1740, 1926, 2169, 2545
BsaJI CCNNGG 5 cut(s) 10, 854, 1580, 1931, 2182
BsaWI WCCGGW 1 cut(s) 2910
Bsc4I CCNNNNNNNGG 7 cut(s) 872, 1575, 1684, 1963, 2333, 2441, 2924
Bse1I ACTGG 9 cut(s) 306, 730, 783, 1215, 1728, 1833, 2041, 2438, 2795
Bse3DI GCAATG 1 cut(s) 1511
Bse8I GATNNNNATC 7 cut(s) 372, 988, 1191, 1740, 1926, 2169, 2545
BseAI TCCGGA 1 cut(s) 2910
BseBI CCWGG 5 cut(s) 856, 1470, 1581, 2301, 2334
BseCI ATCGAT 1 cut(s) 2389
BseDI CCNNGG 5 cut(s) 10, 854, 1580, 1931, 2182
BseGI GGATG 9 cut(s) 207, 453, 559, 787, 1372, 1411, 1897, 1942, 2514
BseJI GATNNNNATC 7 cut(s) 372, 988, 1191, 1740, 1926, 2169, 2545
BseLI CCNNNNNNNGG 7 cut(s) 872, 1575, 1684, 1963, 2333, 2441, 2924
BseMI GCAATG 1 cut(s) 1511
BseMII CTCAG 2 cut(s) 599, 2659
BseNI ACTGG 9 cut(s) 306, 730, 783, 1215, 1728, 1833, 2041, 2438, 2795
BseRI GAGGAG 1 cut(s) 2319
BseXI GCAGC 7 cut(s) 509, 757, 898, 926, 1046, 1153, 1306
BseYI CCCAGC 1 cut(s) 2860
BsgI GTGCAG 1 cut(s) 2598
Bsh1236I CGCG 1 cut(s) 1702
BshFI GGCC 5 cut(s) 1045, 1579, 1672, 2361, 2837
BshVI ATCGAT 1 cut(s) 2389
BsiHKAI GWGCWC 2 cut(s) 887, 1845
BsiSI CCGG 2 cut(s) 2911, 2925
BslFI GGGAC 5 cut(s) 418, 595, 940, 1328, 2907
BslI CCNNNNNNNGG 7 cut(s) 872, 1575, 1684, 1963, 2333, 2441, 2924
BsmAI GTCTC 6 cut(s) 644, 1239, 1272, 2587, 2607, 2730
BsmFI GGGAC 5 cut(s) 418, 595, 940, 1328, 2907
BsmI GAATGC 2 cut(s) 525, 2422
BsnI GGCC 5 cut(s) 1045, 1579, 1672, 2361, 2837
Bsp1286I GDGCHC 2 cut(s) 887, 1845
Bsp13I TCCGGA 1 cut(s) 2910
Bsp19I CCATGG 2 cut(s) 10, 1931
BspACI CCGC 6 cut(s) 866, 1179, 1384, 1570, 1702, 2238
BspANI GGCC 5 cut(s) 1045, 1579, 1672, 2361, 2837
BspCNI CTCAG 2 cut(s) 600, 2658
BspDI ATCGAT 1 cut(s) 2389
BspEI TCCGGA 1 cut(s) 2910
BspFNI CGCG 1 cut(s) 1702
BspHI TCATGA 1 cut(s) 2638
BspLI GGNNCC 5 cut(s) 828, 1003, 1165, 1565, 2481
BspMAI CTGCAG 2 cut(s) 747, 916
BsrDI GCAATG 1 cut(s) 1511
BsrI ACTGG 9 cut(s) 306, 730, 783, 1215, 1728, 1833, 2041, 2438, 2795
BssECI CCNNGG 5 cut(s) 10, 854, 1580, 1931, 2182
BssSI CACGAG 1 cut(s) 650
BssT1I CCWWGG 3 cut(s) 10, 1931, 2182
Bst2BI CACGAG 1 cut(s) 650
Bst2UI CCWGG 5 cut(s) 856, 1470, 1581, 2301, 2334
Bst4CI ACNGT 8 cut(s) 208, 221, 800, 1271, 1303, 1351, 2064, 2096
Bst6I CTCTTC 4 cut(s) 36, 504, 1677, 2497
BstAPI GCANNNNNTGC 1 cut(s) 1892
BstC8I GCNNGC 4 cut(s) 110, 622, 1378, 1382
BstDEI CTNAG 3 cut(s) 608, 2645, 2846
BstDSI CCRYGG 2 cut(s) 10, 1931
BstEII GGTNACC 1 cut(s) 952
BstF5I GGATG 9 cut(s) 207, 453, 559, 787, 1372, 1411, 1897, 1942, 2514
BstFNI CGCG 1 cut(s) 1702
BstHHI GCGC 2 cut(s) 249, 2296
BstMAI GTCTC 6 cut(s) 644, 1239, 1272, 2587, 2607, 2730
BstMWI GCNNNNNNNGC 7 cut(s) 908, 1025, 1034, 1141, 1328, 1892, 2492
BstNI CCWGG 5 cut(s) 856, 1470, 1581, 2301, 2334
BstNSI RCATGY 6 cut(s) 480, 576, 624, 766, 1380, 1384
BstPAI GACNNNNGTC 1 cut(s) 2599
BstPI GGTNACC 1 cut(s) 952
BstSCI CCNGG 6 cut(s) 854, 1468, 1579, 2299, 2332, 2923
BstSFI CTRYAG 5 cut(s) 743, 912, 1267, 1332, 2104
BstUI CGCG 1 cut(s) 1702
BstV1I GCAGC 7 cut(s) 509, 757, 898, 926, 1046, 1153, 1306
BstV2I GAAGAC 2 cut(s) 26, 2601
BstX2I RGATCY 8 cut(s) 49, 255, 373, 893, 965, 1192, 1563, 2479
BstYI RGATCY 8 cut(s) 49, 255, 373, 893, 965, 1192, 1563, 2479
Bsu15I ATCGAT 1 cut(s) 2389
BsuI GTATCC 2 cut(s) 1060, 1729
BsuRI GGCC 5 cut(s) 1045, 1579, 1672, 2361, 2837
BsuTUI ATCGAT 1 cut(s) 2389
BtgI CCRYGG 2 cut(s) 10, 1931
BtsCI GGATG 9 cut(s) 207, 453, 559, 787, 1372, 1411, 1897, 1942, 2514
BtsI GCAGTG 4 cut(s) 487, 799, 897, 1792
Cac8I GCNNGC 4 cut(s) 110, 622, 1378, 1382
CaiI CAGNNNCTG 2 cut(s) 446, 2605
CciI TCATGA 1 cut(s) 2638
CfoI GCGC 2 cut(s) 249, 2296
Cfr13I GGNCC 3 cut(s) 1043, 1164, 2359
ClaI ATCGAT 1 cut(s) 2389
CseI GACGC 2 cut(s) 613, 906
CsiI ACCWGGT 1 cut(s) 1468
Csp6I GTAC 2 cut(s) 2001, 2429
CviQI GTAC 2 cut(s) 2001, 2429
DdeI CTNAG 3 cut(s) 608, 2645, 2846
DraIII CACNNNGTG 2 cut(s) 35, 121
DrdI GACNNNNNNGTC 1 cut(s) 934
DseDI GACNNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 1 cut(s) 2835
Eam1104I CTCTTC 4 cut(s) 36, 504, 1677, 2497
EarI CTCTTC 4 cut(s) 36, 504, 1677, 2497
EciI GGCGGA 1 cut(s) 855
Ecl136II GAGCTC 1 cut(s) 885
Eco130I CCWWGG 3 cut(s) 10, 1931, 2182
Eco24I GRGCYC 1 cut(s) 887
Eco32I GATATC 3 cut(s) 1596, 2167, 2467
Eco47I GGWCC 1 cut(s) 1164
Eco53kI GAGCTC 1 cut(s) 885
Eco57I CTGAAG 6 cut(s) 60, 252, 303, 1245, 1497, 1701
Eco91I GGTNACC 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 885
EcoO65I GGTNACC 1 cut(s) 952
EcoRI GAATTC 1 cut(s) 2557
EcoRII CCWGG 5 cut(s) 854, 1468, 1579, 2299, 2332
EcoRV GATATC 3 cut(s) 1596, 2167, 2467
EcoT14I CCWWGG 3 cut(s) 10, 1931, 2182
EcoT22I ATGCAT 3 cut(s) 604, 1382, 2422
EcoT38I GRGCYC 1 cut(s) 887
ErhI CCWWGG 3 cut(s) 10, 1931, 2182
FaqI GGGAC 5 cut(s) 418, 595, 940, 1328, 2907
FauI CCCGC 1 cut(s) 1577
FauNDI CATATG 5 cut(s) 178, 1746, 2089, 2586, 2947
FbaI TGATCA 3 cut(s) 58, 1447, 1987
FblI GTMKAC 1 cut(s) 1224
Fnu4HI GCNGC 8 cut(s) 523, 746, 912, 915, 1035, 1142, 1320, 2238
FokI GGATG 9 cut(s) 214, 440, 566, 794, 1379, 1418, 1904, 1949, 2521
FriOI GRGCYC 1 cut(s) 887
Fsp4HI GCNGC 8 cut(s) 523, 746, 912, 915, 1035, 1142, 1320, 2238
GlaI GCGC 2 cut(s) 248, 2295
GluI GCNGC 8 cut(s) 523, 746, 912, 915, 1035, 1142, 1320, 2238
GsaI CCCAGC 1 cut(s) 2864
GsuI CTGGAG 4 cut(s) 747, 871, 2283, 2421
HaeIII GGCC 5 cut(s) 1045, 1579, 1672, 2361, 2837
HapII CCGG 2 cut(s) 2911, 2925
HgaI GACGC 2 cut(s) 613, 906
HhaI GCGC 2 cut(s) 249, 2296
Hin6I GCGC 2 cut(s) 247, 2294
HinP1I GCGC 2 cut(s) 247, 2294
HincII GTYRAC 1 cut(s) 1879
HindII GTYRAC 1 cut(s) 1879
HpaII CCGG 2 cut(s) 2911, 2925
HphI GGTGA 7 cut(s) 26, 295, 946, 1667, 1829, 1991, 2939
Hpy166II GTNNAC 7 cut(s) 29, 124, 337, 560, 1225, 1879, 2821
Hpy8I GTNNAC 7 cut(s) 29, 124, 337, 560, 1225, 1879, 2821
HpyCH4III ACNGT 8 cut(s) 208, 221, 800, 1271, 1303, 1351, 2064, 2096
HpyCH4IV ACGT 1 cut(s) 1411
HpyF10VI GCNNNNNNNGC 7 cut(s) 908, 1025, 1034, 1141, 1328, 1892, 2492
HpyF3I CTNAG 3 cut(s) 608, 2645, 2846
HpySE526I ACGT 1 cut(s) 1411
HspAI GCGC 2 cut(s) 247, 2294
Kpn2I TCCGGA 1 cut(s) 2910
Ksp22I TGATCA 3 cut(s) 58, 1447, 1987
LmnI GCTCC 8 cut(s) 244, 728, 882, 890, 1840, 2317, 2745, 2874
Lsp1109I GCAGC 7 cut(s) 509, 757, 898, 926, 1046, 1153, 1306
LweI GCATC 6 cut(s) 121, 452, 772, 1306, 1807, 1882
MabI ACCWGGT 1 cut(s) 1468
MaeII ACGT 1 cut(s) 1411
MaeIII GTNAC 7 cut(s) 5, 215, 794, 952, 1914, 1971, 2343
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 8 cut(s) 49, 255, 373, 893, 965, 1192, 1563, 2479
MhlI GDGCHC 2 cut(s) 887, 1845
MlyI GAGTC 4 cut(s) 1220, 2156, 2393, 2574
MmeI TCCRAC 4 cut(s) 406, 481, 1344, 2479
Mph1103I ATGCAT 3 cut(s) 604, 1382, 2422
MroI TCCGGA 1 cut(s) 2910
MseI TTAA 7 cut(s) 210, 357, 1068, 2007, 2625, 2667, 2868
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 2 cut(s) 2911, 2925
MspR9I CCNGG 6 cut(s) 856, 1470, 1581, 2301, 2334, 2925
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 2 cut(s) 525, 2422
MvaI CCWGG 5 cut(s) 856, 1470, 1581, 2301, 2334
MvnI CGCG 1 cut(s) 1702
MwoI GCNNNNNNNGC 7 cut(s) 908, 1025, 1034, 1141, 1328, 1892, 2492
NciI CCSGG 1 cut(s) 2925
NcoI CCATGG 2 cut(s) 10, 1931
NdeI CATATG 5 cut(s) 178, 1746, 2089, 2586, 2947
NlaIV GGNNCC 5 cut(s) 828, 1003, 1165, 1565, 2481
NmeAIII GCCGAG 2 cut(s) 2186, 2863
NmuCI GTSAC 6 cut(s) 5, 215, 794, 952, 1914, 2343
NsiI ATGCAT 3 cut(s) 604, 1382, 2422
NspI RCATGY 6 cut(s) 480, 576, 624, 766, 1380, 1384
OliI CACNNNNGTG 1 cut(s) 308
PaeI GCATGC 3 cut(s) 624, 1380, 1384
PagI TCATGA 1 cut(s) 2638
PctI GAATGC 2 cut(s) 525, 2422
PfeI GAWTC 6 cut(s) 328, 1940, 2072, 2266, 2541, 2914
PflFI GACNNNGTC 1 cut(s) 1112
PflMI CCANNNNNTGG 1 cut(s) 1963
PfoI TCCNGGA 1 cut(s) 2299
PkrI GCNGC 8 cut(s) 524, 747, 913, 916, 1036, 1143, 1321, 2239
PleI GAGTC 4 cut(s) 1220, 2155, 2393, 2574
PpsI GAGTC 4 cut(s) 1220, 2155, 2393, 2574
PshAI GACNNNNGTC 1 cut(s) 2599
PsiI TTATAA 1 cut(s) 821
Psp124BI GAGCTC 1 cut(s) 887
Psp6I CCWGG 5 cut(s) 854, 1468, 1579, 2299, 2332
PspEI GGTNACC 1 cut(s) 952
PspFI CCCAGC 1 cut(s) 2860
PspGI CCWGG 5 cut(s) 854, 1468, 1579, 2299, 2332
PspN4I GGNNCC 5 cut(s) 828, 1003, 1165, 1565, 2481
PspPI GGNCC 3 cut(s) 1043, 1164, 2359
PstI CTGCAG 2 cut(s) 747, 916
PstNI CAGNNNCTG 2 cut(s) 446, 2605
PsuI RGATCY 8 cut(s) 49, 255, 373, 893, 965, 1192, 1563, 2479
PsyI GACNNNGTC 1 cut(s) 1112
RsaI GTAC 2 cut(s) 2002, 2430
RsaNI GTAC 2 cut(s) 2001, 2429
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 887
SaqAI TTAA 7 cut(s) 210, 357, 1068, 2007, 2625, 2667, 2868
SatI GCNGC 8 cut(s) 523, 746, 912, 915, 1035, 1142, 1320, 2238
Sau96I GGNCC 3 cut(s) 1043, 1164, 2359
ScaI AGTACT 1 cut(s) 2002
SchI GAGTC 4 cut(s) 1220, 2156, 2393, 2574
ScrFI CCNGG 6 cut(s) 856, 1470, 1581, 2301, 2334, 2925
SduI GDGCHC 2 cut(s) 887, 1845
SexAI ACCWGGT 1 cut(s) 1468
SfaNI GCATC 6 cut(s) 121, 452, 772, 1306, 1807, 1882
SfcI CTRYAG 5 cut(s) 743, 912, 1267, 1332, 2104
SinI GGWCC 1 cut(s) 1164
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 3 cut(s) 663, 2283, 2689
SmoI CTYRAG 3 cut(s) 663, 2283, 2689
SpeI ACTAGT 1 cut(s) 845
SphI GCATGC 3 cut(s) 624, 1380, 1384
SsiI CCGC 6 cut(s) 866, 1179, 1384, 1570, 1702, 2238
SspI AATATT 2 cut(s) 395, 739
SstI GAGCTC 1 cut(s) 887
StyD4I CCNGG 6 cut(s) 854, 1468, 1579, 2299, 2332, 2923
StyI CCWWGG 3 cut(s) 10, 1931, 2182
TaaI ACNGT 8 cut(s) 208, 221, 800, 1271, 1303, 1351, 2064, 2096
TaiI ACGT 1 cut(s) 1414
TaqI TCGA 4 cut(s) 1920, 2173, 2389, 2469
TaqII GACCGA 1 cut(s) 940
TatI WGTACW 1 cut(s) 2000
TauI GCSGC 1 cut(s) 2240
TfiI GAWTC 6 cut(s) 328, 1940, 2072, 2266, 2541, 2914
Tru1I TTAA 7 cut(s) 210, 357, 1068, 2007, 2625, 2667, 2868
Tru9I TTAA 7 cut(s) 210, 357, 1068, 2007, 2625, 2667, 2868
TseFI GTSAC 6 cut(s) 5, 215, 794, 952, 1914, 2343
TseI GCWGC 7 cut(s) 522, 745, 911, 914, 1034, 1141, 1319
Tsp45I GTSAC 6 cut(s) 5, 215, 794, 952, 1914, 2343
TspGWI ACGGA 3 cut(s) 1251, 2694, 2904
Tth111I GACNNNGTC 1 cut(s) 1112
Van91I CCANNNNNTGG 1 cut(s) 1963
VpaK11BI GGWCC 1 cut(s) 1164
XapI RAATTY 3 cut(s) 2557, 2764, 2906
XbaI TCTAGA 1 cut(s) 2045
XceI RCATGY 6 cut(s) 480, 576, 624, 766, 1380, 1384
XcmI CCANNNNNNNNNTGG 2 cut(s) 1587, 1834
XmiI GTMKAC 1 cut(s) 1224
ZrmI AGTACT 1 cut(s) 2002
Zsp2I ATGCAT 3 cut(s) 604, 1382, 2422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.