pycom03g08800

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001311
Physical Location & Seq
Reverse (-)
7218557 .. 7227856
9300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g08800.6

Sequence Viewer

Length: 3354 bp
ATGATCCATATTGGATTATCTCTCCATAACAATAAGGCTAAGGTCAAAAACAAATTAAAAGATATCTTAATAATAAAAACAAAACATATTAATCAATATTTGAATAATAATCAAATCGTGAACAACCACCATCCAAACAAGCCCTTCTCCCTCTCTCTCACCCCTAAAAAGCACCCCCTCTTATTGTGTGTGTCTCTCTCTCTATCTCTTGCTGCGTTGCGATCCTCACACCACAATCTCATCCTCACAGATTCGTCCTCTTCTTCTCGATCCCCAACTGTTTTTAAGGTAATCATGAGTGACCAGGGAGAAAAGACTTGCCCTCTTTGCGCGGAGGAGATGGATTTGACAGATCAGCAATTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGAGACAGAGGGGCGGTGCCCTGCATGCCGCACTCCTTATGACAAGGAAAAGATTGTAGGAACGGCTGGAAAGTGTGTGAGGCTGGTGGCAGAAATCAACACTGAGAAAAAGATGAAGTCTCAGAAGGCAAAGGTCAAATCTACCGAAGGGCGGAAGCAGCTGACTAGCGTGCGAGTCATTCAACGGAACCTCGTTTACATAGTTGGATTGCCTCTTAATCTGGCAGATGAAGATGTAATTCTCCCTCTCTTTGGACTTGATATTAGTCTTCTGCAGCGCAGAGAATATTTTGGTCAGTATGGGAAGGTTCAAAAAGTGTCTATGTCTCGAACAGCAGCTGGCGTCATTCAGCAATTTCCAAACAATACATGTAGTGTATATATTACATACTTGAAAGAGGAGGAAGCAATCCGTTGTATTCAAAATGTACATGGGTTCCTCTTGGATGGTAGATCTTTGAGGGCTTGCTTTGGGACCACAAAATATTGTCATGCATGGCTGAGGAATGTGCCTTGCACCAATCCTGATTGTTTGTATCTGCACGAGGTTGGGTCTCAGGAGGATAGTTTCACTAAAGATGAAATAATTTCTGCATACACTAGGGGAACACGTGTTTCAAACTGCCAACCACCAGCTACACATATAATAAGTTCAAATGGACATTCAAAACAGAAACCTGATACAGTCAGTTGCACGTTGCCATTTTCTTCAGCAGCTGTTGCTACTGTTCAGTCATCTACAGTGCATAGTGATGCTGGAAATAGGTCAGCATTAAATGAAGAAAGTCAGACTGTGCATGCTAAATCTAAACCAGAATCATTGAAGATTGTGAAACAGCGTAGTGGCGTGGATTGTCAAAATGATCTGTCTGACAATCCTGCTGCACCCGATGAAGGCTCTGCTTCTGTGAATGTTAGCAGCCAGTTATCTGCCCCATCAGTATCCAAGGACAATGATAGAGGCAGTAGCATGCAGGCAAACATTAGCAATCCCACCAACTATAATCATCTATCTTACAGTTATCGTCATGAAAATGAAAACATTTTTTCTGCTGAAGAAGTGGTCCAAAACTTATGCTCTGATATCCCTCTAATGAGCATTGATAGAAATGCCAAGGTTGAACATTCCAGTGTAGTCGGACCTAATAGTTCCCTTTCAGATTACTCCTTTGTTAAATCGCCTCGGAACCAACAATATTGTGCTGAGCAATCTAGAGAGCCTCCAACAACTGGTGATAAAGCTGTCACACCTGTTAATGGGGTGTGTGTTACAAGGGAACAATCCAACTGGACCCTAGATTTGCAAGCCCAATTAGTGCCAAGTACATCTTCAGAAGTGGAAGAGGATGTACTATCTTTTGACAATCAAAGACTAAAGGATCCAGAAGTGAGTCGATCAACATATTTGCCTAGTTTGCCTAATACAGTACATGCTCCAAACCACTCTAGGTCTCCTTTGTTGCATAATGAGGCTTATGGTGCAGTTTATGCCAATGCTGATCGTCTATTTGTAGATAACAAAGTTAAGGACAGTTCACTTCTATCTTCGTCCAGTGTTTCAATAACATCTAATGGATACCCTGAAAACATGGTAACCAGATCTGGTTCAGAGAGGCCCTTGGAGCATTCCTATCCTCTTCTAAATGACATCCCAGGGAAGCACACTGGAAGATTCCTGGATGATGCAGCAAATCCTGATTTCAGTACTGCTGTTGACAAGGGAGAGAGTAGCATAATCTCAAATATATTATCGATGGACTCACTAACATGGGATGACTCACTAACATCACCACAGCATTTCTCCAAATTCTTGGGTGAAACTGATAGACAGTCTGGAGCTCTCAAAATGTCGAGTCCTTGGAAAGTACAAAATAACAATCAGTCCAGATTCTCTTTTGCAAGACAGGAGGATGCTAAAAATCAAGCATTTGATGTACAGTCATCTCTGAATGTTGGCGGGCAGTTTTCTAATAACCAGTCATTCCACCAAGGCTTTTCTGAAAATAGAGATTTATTTTTGGATAATCTAGGAATTGGCAATGGTTTCCCATCTAGTACTTTTGAAGAATCTGAAAATCATGCCAGCAATCATTTAGCTTTCTCTTCTAACAAGCTTTCTGGTGAGGCTCAAATTTCTGCTCCTCCTGGATTCTCTGTGCCAAGCAGGGCACCACCTCCGGGCTTTACTTCTCATGAGAGAGTGGATCAGGACTTTGACACTCTGTCTGGGAATCATCTGTATGATAATTCATCTTTGTTGAGAAACGCATATCAACCTCAGGCAACTGGAAATATTGGGAGCTCCGCAGATATTGAGTTTATGGATCCCGCTATATTGGCAGTTGGAAAGGGGAGACTGCAAGGTGGGCTTAACAACCAAGGCCTAGAAATGAGATCAAACTTCCCTTCGCAGTTAAGTGGGTATGAAAATGATGCAAGGCTTCAACTATTGATGCAAAGATCACTGGCCCCACAACAAAATCTTAGATTTCCTGATTTTGGGGATGGTTTTTCTCACGTCAATGATTCTTATGGTTTCTCCTCAAGGCGTTTGGAGCAGTCCCAGGCTAGCAATCTTTCCCCTTTTTCGCAAATGTCCCTCCAACAGTCCAGAAACCGGGGCATGTCAAATGGCCACTGGGATGGGTGGAATGAGGTTCAGGGTGGAAGCAATGTAGGTATGTCAGAGCTCCTGAGAAATGAGAGACTAGGATTCAACAAGTTTTACTCTGGTTATGAAGAATCAAAGTTTCGGATGCCTAGCTCCGGCGATCTATATAACAGAACATTTGGGAGGATGGGACTGACTCATAACTGGTCTTGCTATCGGCAGCCTGATGTAGGGTCAAACTCCCGTACTTTTGGGGTCTGTAATCCTGCAGGTAAGAATCAAATACTTGGTGGGGCGATAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

1118

Amino Acids

123.35

Weight (kDa)

6.52

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 3305
AccB1I GGYRCC 3 cut(s) 405, 450, 2602
AccB7I CCANNNNNTGG 2 cut(s) 415, 1664
AccII CGCG 1 cut(s) 332
AciI CCGC 7 cut(s) 332, 448, 463, 586, 2391, 2739, 2763
AclWI GGATC 7 cut(s) 216, 264, 1808, 1821, 2646, 2753, 2766
AcoI YGGCCR 1 cut(s) 3067
AcsI RAATTY 2 cut(s) 2240, 2565
AcuI CTGAAG 3 cut(s) 1128, 1509, 1749
AcvI CACGTG 1 cut(s) 1046
AcyI GRCGYC 1 cut(s) 777
AfaI GTAC 9 cut(s) 864, 1759, 1785, 1863, 2140, 2301, 2370, 2491, 3292
AflIII ACRYGT 3 cut(s) 803, 1043, 1045
AhdI GACNNNNNGTC 1 cut(s) 2656
AjiI CACGTC 1 cut(s) 2953
AjnI CCWGG 5 cut(s) 303, 2086, 2109, 2578, 2997
AjuI GAANNNNNNNTTGG 2 cut(s) 1747, 1779
Alw21I GWGCWC 3 cut(s) 2275, 2738, 3126
Alw26I GTCTC 8 cut(s) 198, 431, 558, 765, 993, 1890, 2782, 3133
AlwI GGATC 7 cut(s) 216, 264, 1808, 1821, 2646, 2753, 2766
AlwNI CAGNNNCTG 2 cut(s) 773, 1151
AoxI GGCC 4 cut(s) 2048, 2815, 2901, 3067
ApeKI GCWGC 9 cut(s) 212, 592, 709, 770, 1148, 1316, 1353, 2120, 3265
ApoI RAATTY 2 cut(s) 2240, 2565
ArsI GACNNNNNNTTYG 2 cut(s) 1717, 1749
AseI ATTAAT 1 cut(s) 90
AspLEI GCGC 2 cut(s) 332, 714
AspS9I GGNCC 6 cut(s) 909, 1498, 1574, 1725, 2049, 2902
AsuC2I CCSGG 2 cut(s) 2613, 3053
AsuHPI GGTGA 5 cut(s) 151, 1679, 2214, 2261, 2567
AsuNHI GCTAGC 1 cut(s) 3002
AvaII GGWCC 4 cut(s) 909, 1498, 1574, 1725
AxyI CCTNAGG 1 cut(s) 2712
BaeGI GKGCMC 2 cut(s) 455, 2605
BalI TGGCCA 1 cut(s) 3069
BamHI GGATCC 2 cut(s) 1813, 2758
BanI GGYRCC 3 cut(s) 405, 450, 2602
BanII GRGCYC 3 cut(s) 2275, 2738, 3126
BarI GAAGNNNNNNTAC 2 cut(s) 1767, 1799
BauI CACGAG 1 cut(s) 977
BbrPI CACGTG 1 cut(s) 1046
BbsI GAAGAC 1 cut(s) 695
Bbv12I GWGCWC 3 cut(s) 2275, 2738, 3126
BbvCI CCTCAGC 1 cut(s) 935
BbvI GCAGC 9 cut(s) 199, 604, 721, 782, 1160, 1303, 1365, 2132, 3277
BccI CCATC 9 cut(s) 138, 334, 875, 1378, 2182, 2491, 2933, 3071, 3226
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 5 cut(s) 305, 2088, 2111, 2580, 2999
BciVI GTATCC 2 cut(s) 1387, 2003
BcnI CCSGG 2 cut(s) 2613, 3053
BcoDI GTCTC 8 cut(s) 198, 431, 558, 765, 993, 1890, 2782, 3133
BfmI CTRYAG 3 cut(s) 707, 1173, 3312
BfuAI ACCTGC 1 cut(s) 3305
BfuI GTATCC 2 cut(s) 1387, 2003
BglII AGATCT 2 cut(s) 887, 2033
BlpI GCTNAGC 1 cut(s) 1638
BmcAI AGTACT 2 cut(s) 2140, 2491
Bme1390I CCNGG 7 cut(s) 305, 2088, 2111, 2580, 2613, 2999, 3053
Bme18I GGWCC 4 cut(s) 909, 1498, 1574, 1725
BmeRI GACNNNNNGTC 1 cut(s) 2656
BmgBI CACGTC 1 cut(s) 2953
BmgT120I GGNCC 6 cut(s) 909, 1498, 1574, 1725, 2049, 2902
BmrFI CCNGG 7 cut(s) 305, 2088, 2111, 2580, 2613, 2999, 3053
BmrI ACTGGG 1 cut(s) 3082
BmsI GCATC 6 cut(s) 1177, 2107, 2335, 2857, 2877, 3180
BmtI GCTAGC 1 cut(s) 3006
BmuI ACTGGG 1 cut(s) 3082
BpiI GAAGAC 1 cut(s) 695
BpmI CTGGAG 1 cut(s) 2289
Bpu10I CCTNAGC 2 cut(s) 39, 935
Bpu1102I GCTNAGC 1 cut(s) 1638
BpuEI CTTGAG 1 cut(s) 2962
BpuMI CCSGG 2 cut(s) 2613, 3053
Bsa29I ATCGAT 1 cut(s) 2186
BsaAI YACGTR 1 cut(s) 1046
BsaHI GRCGYC 1 cut(s) 777
BsaI GGTCTC 2 cut(s) 993, 1890
Bse21I CCTNAGG 1 cut(s) 2712
Bse3DI GCAATG 2 cut(s) 2479, 3112
BseBI CCWGG 5 cut(s) 305, 2088, 2111, 2580, 2999
BseCI ATCGAT 1 cut(s) 2186
BseMI GCAATG 2 cut(s) 2479, 3112
BseMII CTCAG 8 cut(s) 417, 528, 569, 926, 1004, 1629, 2726, 3119
BseRI GAGGAG 4 cut(s) 350, 848, 2565, 2965
BseSI GKGCMC 2 cut(s) 455, 2605
BseXI GCAGC 9 cut(s) 199, 604, 721, 782, 1160, 1303, 1365, 2132, 3277
BsgI GTGCAG 3 cut(s) 959, 1302, 1935
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 4 cut(s) 2050, 2817, 2903, 3069
BshNI GGYRCC 3 cut(s) 405, 450, 2602
BshVI ATCGAT 1 cut(s) 2186
BsiHKAI GWGCWC 3 cut(s) 2275, 2738, 3126
BsiSI CCGG 3 cut(s) 2612, 3052, 3201
BslFI GGGAC 4 cut(s) 922, 2980, 3016, 3249
BsmAI GTCTC 8 cut(s) 198, 431, 558, 765, 993, 1890, 2782, 3133
BsmFI GGGAC 4 cut(s) 922, 2980, 3016, 3249
BsmI GAATGC 1 cut(s) 2059
BsnI GGCC 4 cut(s) 2050, 2817, 2903, 3069
Bso31I GGTCTC 2 cut(s) 993, 1890
Bsp1286I GDGCHC 5 cut(s) 455, 2275, 2605, 2738, 3126
Bsp1407I TGTACA 2 cut(s) 862, 2368
Bsp1720I GCTNAGC 1 cut(s) 1638
BspACI CCGC 7 cut(s) 332, 448, 463, 586, 2391, 2739, 2763
BspANI GGCC 4 cut(s) 2050, 2817, 2903, 3069
BspCNI CTCAG 8 cut(s) 418, 529, 568, 927, 1003, 1630, 2725, 3120
BspDI ATCGAT 1 cut(s) 2186
BspFNI CGCG 1 cut(s) 332
BspHI TCATGA 3 cut(s) 294, 1462, 2626
BspMAI CTGCAG 2 cut(s) 711, 3316
BspMI ACCTGC 1 cut(s) 3305
BspOI GCTAGC 1 cut(s) 3006
BspPI GGATC 7 cut(s) 216, 264, 1808, 1821, 2646, 2753, 2766
BspT107I GGYRCC 3 cut(s) 405, 450, 2602
BspTNI GGTCTC 2 cut(s) 993, 1890
BsrDI GCAATG 2 cut(s) 2479, 3112
BsrGI TGTACA 2 cut(s) 862, 2368
BssNI GRCGYC 1 cut(s) 777
BssSI CACGAG 1 cut(s) 977
BssT1I CCWWGG 6 cut(s) 1380, 1548, 2052, 2291, 2422, 2812
Bst2BI CACGAG 1 cut(s) 977
Bst2UI CCWGG 5 cut(s) 305, 2088, 2111, 2580, 2999
Bst6I CTCTTC 4 cut(s) 265, 1770, 2076, 2542
BstACI GRCGYC 1 cut(s) 777
BstAPI GCANNNNNTGC 2 cut(s) 1154, 1922
BstAUI TGTACA 2 cut(s) 862, 2368
BstBAI YACGTR 1 cut(s) 1046
BstEII GGTNACC 1 cut(s) 2026
BstENI CCTNNNNNAGG 1 cut(s) 3273
BstFNI CGCG 1 cut(s) 332
BstHHI GCGC 2 cut(s) 332, 714
BstMAI GTCTC 8 cut(s) 198, 431, 558, 765, 993, 1890, 2782, 3133
BstNI CCWGG 5 cut(s) 305, 2088, 2111, 2580, 2999
BstNSI RCATGY 6 cut(s) 462, 807, 1235, 1408, 1868, 3061
BstPI GGTNACC 1 cut(s) 2026
BstSCI CCNGG 7 cut(s) 303, 2086, 2109, 2578, 2611, 2997, 3051
BstSFI CTRYAG 3 cut(s) 707, 1173, 3312
BstSLI GKGCMC 2 cut(s) 455, 2605
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 9 cut(s) 199, 604, 721, 782, 1160, 1303, 1365, 2132, 3277
BstV2I GAAGAC 1 cut(s) 695
BstX2I RGATCY 4 cut(s) 887, 1813, 2033, 2758
BstXI CCANNNNNNTGG 2 cut(s) 2245, 3077
BstYI RGATCY 4 cut(s) 887, 1813, 2033, 2758
Bsu15I ATCGAT 1 cut(s) 2186
Bsu36I CCTNAGG 1 cut(s) 2712
BsuI GTATCC 2 cut(s) 1387, 2003
BsuRI GGCC 4 cut(s) 2050, 2817, 2903, 3069
BsuTUI ATCGAT 1 cut(s) 2186
BtrI CACGTC 1 cut(s) 2953
BtsIMutI CAGTG 7 cut(s) 534, 1182, 1570, 1993, 2097, 2897, 3070
BveI ACCTGC 1 cut(s) 3305
CaiI CAGNNNCTG 2 cut(s) 773, 1151
CciI TCATGA 3 cut(s) 294, 1462, 2626
CfoI GCGC 2 cut(s) 332, 714
Cfr13I GGNCC 6 cut(s) 909, 1498, 1574, 1725, 2049, 2902
ClaI ATCGAT 1 cut(s) 2186
CseI GACGC 1 cut(s) 766
Csp6I GTAC 9 cut(s) 863, 1758, 1784, 1862, 2139, 2300, 2369, 2490, 3291
CviQI GTAC 9 cut(s) 863, 1758, 1784, 1862, 2139, 2300, 2369, 2490, 3291
DriI GACNNNNNGTC 1 cut(s) 2656
EaeI YGGCCR 1 cut(s) 3067
Eam1104I CTCTTC 4 cut(s) 265, 1770, 2076, 2542
Eam1105I GACNNNNNGTC 1 cut(s) 2656
EarI CTCTTC 4 cut(s) 265, 1770, 2076, 2542
EciI GGCGGA 1 cut(s) 601
Ecl136II GAGCTC 3 cut(s) 2273, 2736, 3124
Eco130I CCWWGG 6 cut(s) 1380, 1548, 2052, 2291, 2422, 2812
Eco147I AGGCCT 1 cut(s) 2817
Eco24I GRGCYC 3 cut(s) 2275, 2738, 3126
Eco31I GGTCTC 2 cut(s) 993, 1890
Eco32I GATATC 2 cut(s) 64, 1519
Eco47I GGWCC 4 cut(s) 909, 1498, 1574, 1725
Eco53kI GAGCTC 3 cut(s) 2273, 2736, 3124
Eco57I CTGAAG 3 cut(s) 1128, 1509, 1749
Eco72I CACGTG 1 cut(s) 1046
Eco81I CCTNAGG 1 cut(s) 2712
Eco91I GGTNACC 1 cut(s) 2026
EcoICRI GAGCTC 3 cut(s) 2273, 2736, 3124
EcoNI CCTNNNNNAGG 1 cut(s) 3273
EcoO109I RGGNCCY 1 cut(s) 2049
EcoO65I GGTNACC 1 cut(s) 2026
EcoRII CCWGG 5 cut(s) 303, 2086, 2109, 2578, 2997
EcoRV GATATC 2 cut(s) 64, 1519
EcoT14I CCWWGG 6 cut(s) 1380, 1548, 2052, 2291, 2422, 2812
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 3 cut(s) 2275, 2738, 3126
ErhI CCWWGG 6 cut(s) 1380, 1548, 2052, 2291, 2422, 2812
FalI AAGNNNNNCTT 4 cut(s) 1747, 1779, 2787, 2819
FaqI GGGAC 4 cut(s) 922, 2980, 3016, 3249
FauI CCCGC 2 cut(s) 2384, 2770
FriOI GRGCYC 3 cut(s) 2275, 2738, 3126
GlaI GCGC 2 cut(s) 331, 713
GsuI CTGGAG 1 cut(s) 2289
HaeIII GGCC 4 cut(s) 2050, 2817, 2903, 3069
HapII CCGG 3 cut(s) 2612, 3052, 3201
HgaI GACGC 1 cut(s) 766
HhaI GCGC 2 cut(s) 332, 714
Hin1I GRCGYC 1 cut(s) 777
Hin6I GCGC 2 cut(s) 330, 712
HinP1I GCGC 2 cut(s) 330, 712
HincII GTYRAC 1 cut(s) 2149
HindII GTYRAC 1 cut(s) 2149
HindIII AAGCTT 1 cut(s) 2546
HpaII CCGG 3 cut(s) 2612, 3052, 3201
HphI GGTGA 5 cut(s) 151, 1679, 2214, 2261, 2567
Hpy166II GTNNAC 4 cut(s) 121, 631, 1970, 2149
Hpy8I GTNNAC 4 cut(s) 121, 631, 1970, 2149
HpyAV CCTTC 7 cut(s) 154, 424, 553, 575, 733, 1322, 2850
HpyCH4IV ACGT 3 cut(s) 1045, 1130, 2952
HpySE526I ACGT 3 cut(s) 1045, 1130, 2952
Hsp92I GRCGYC 1 cut(s) 777
HspAI GCGC 2 cut(s) 330, 712
LmnI GCTCC 9 cut(s) 1873, 2056, 2270, 2578, 2733, 2741, 2989, 3129, 3203
Lsp1109I GCAGC 9 cut(s) 199, 604, 721, 782, 1160, 1303, 1365, 2132, 3277
LweI GCATC 6 cut(s) 1177, 2107, 2335, 2857, 2877, 3180
MaeII ACGT 3 cut(s) 1045, 1130, 2952
MaeIII GTNAC 4 cut(s) 299, 1678, 1702, 2026
MfeI CAATTG 1 cut(s) 359
MflI RGATCY 4 cut(s) 887, 1813, 2033, 2758
MhlI GDGCHC 5 cut(s) 455, 2275, 2605, 2738, 3126
MlsI TGGCCA 1 cut(s) 3069
MluNI TGGCCA 1 cut(s) 3069
MlyI GAGTC 6 cut(s) 618, 1834, 2186, 2204, 2296, 3235
MmeI TCCRAC 6 cut(s) 619, 1552, 1682, 1743, 2758, 3061
Mox20I TGGCCA 1 cut(s) 3069
Mph1103I ATGCAT 1 cut(s) 931
MscI TGGCCA 1 cut(s) 3069
MslI CAYNNNNRTG 8 cut(s) 373, 1185, 1467, 1563, 2200, 2673, 2955, 3075
Msp20I TGGCCA 1 cut(s) 3069
MspA1I CMGCKG 3 cut(s) 595, 773, 1151
MspI CCGG 3 cut(s) 2612, 3052, 3201
MspR9I CCNGG 7 cut(s) 305, 2088, 2111, 2580, 2613, 2999, 3053
MunI CAATTG 1 cut(s) 359
Mva1269I GAATGC 1 cut(s) 2059
MvaI CCWGG 5 cut(s) 305, 2088, 2111, 2580, 2999
MvnI CGCG 1 cut(s) 332
NciI CCSGG 2 cut(s) 2613, 3053
NheI GCTAGC 1 cut(s) 3002
NmuCI GTSAC 2 cut(s) 299, 1678
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 6 cut(s) 462, 807, 1235, 1408, 1868, 3061
PaeI GCATGC 3 cut(s) 462, 1235, 1408
PagI TCATGA 3 cut(s) 294, 1462, 2626
PasI CCCWGGG 1 cut(s) 2087
PceI AGGCCT 1 cut(s) 2817
PciI ACATGT 1 cut(s) 803
PctI GAATGC 1 cut(s) 2059
PflMI CCANNNNNTGG 2 cut(s) 415, 1664
PfoI TCCNGGA 2 cut(s) 2109, 2578
PleI GAGTC 6 cut(s) 617, 1833, 2186, 2204, 2295, 3235
PmaCI CACGTG 1 cut(s) 1046
PmlI CACGTG 1 cut(s) 1046
PpsI GAGTC 6 cut(s) 617, 1833, 2186, 2204, 2295, 3235
Ppu21I YACGTR 1 cut(s) 1046
PscI ACATGT 1 cut(s) 803
PshBI ATTAAT 1 cut(s) 90
Psp124BI GAGCTC 3 cut(s) 2275, 2738, 3126
Psp6I CCWGG 5 cut(s) 303, 2086, 2109, 2578, 2997
PspCI CACGTG 1 cut(s) 1046
PspEI GGTNACC 1 cut(s) 2026
PspGI CCWGG 5 cut(s) 303, 2086, 2109, 2578, 2997
PspPI GGNCC 6 cut(s) 909, 1498, 1574, 1725, 2049, 2902
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PstI CTGCAG 2 cut(s) 711, 3316
PstNI CAGNNNCTG 2 cut(s) 773, 1151
PsuI RGATCY 4 cut(s) 887, 1813, 2033, 2758
PvuII CAGCTG 3 cut(s) 595, 773, 1151
RsaI GTAC 9 cut(s) 864, 1759, 1785, 1863, 2140, 2301, 2370, 2491, 3292
RsaNI GTAC 9 cut(s) 863, 1758, 1784, 1862, 2139, 2300, 2369, 2490, 3291
RseI CAYNNNNRTG 8 cut(s) 373, 1185, 1467, 1563, 2200, 2673, 2955, 3075
SacI GAGCTC 3 cut(s) 2275, 2738, 3126
Sau96I GGNCC 6 cut(s) 909, 1498, 1574, 1725, 2049, 2902
SbfI CCTGCAGG 1 cut(s) 3316
ScaI AGTACT 2 cut(s) 2140, 2491
SchI GAGTC 6 cut(s) 618, 1834, 2186, 2204, 2296, 3235
ScrFI CCNGG 7 cut(s) 305, 2088, 2111, 2580, 2613, 2999, 3053
SdaI CCTGCAGG 1 cut(s) 3316
SduI GDGCHC 5 cut(s) 455, 2275, 2605, 2738, 3126
SfaNI GCATC 6 cut(s) 1177, 2107, 2335, 2857, 2877, 3180
SfcI CTRYAG 3 cut(s) 707, 1173, 3312
SinI GGWCC 4 cut(s) 909, 1498, 1574, 1725
SmiMI CAYNNNNRTG 8 cut(s) 373, 1185, 1467, 1563, 2200, 2673, 2955, 3075
SmlI CTYRAG 1 cut(s) 2977
SmoI CTYRAG 1 cut(s) 2977
SphI GCATGC 3 cut(s) 462, 1235, 1408
Sse8387I CCTGCAGG 1 cut(s) 3316
SseBI AGGCCT 1 cut(s) 2817
SsiI CCGC 7 cut(s) 332, 448, 463, 586, 2391, 2739, 2763
SspI AATATT 5 cut(s) 98, 722, 920, 1631, 2728
SstI GAGCTC 3 cut(s) 2275, 2738, 3126
StuI AGGCCT 1 cut(s) 2817
StyD4I CCNGG 7 cut(s) 303, 2086, 2109, 2578, 2611, 2997, 3051
StyI CCWWGG 6 cut(s) 1380, 1548, 2052, 2291, 2422, 2812
TaiI ACGT 3 cut(s) 1048, 1133, 2955
TaqI TCGA 5 cut(s) 268, 763, 1828, 2186, 2285
TatI WGTACW 8 cut(s) 862, 1757, 1783, 1861, 2138, 2299, 2368, 2489
TauI GCSGC 1 cut(s) 465
TscAI CASTG 7 cut(s) 541, 1182, 1570, 1993, 2104, 2904, 3077
TseFI GTSAC 2 cut(s) 299, 1678
TseI GCWGC 9 cut(s) 212, 592, 709, 770, 1148, 1316, 1353, 2120, 3265
Tsp45I GTSAC 2 cut(s) 299, 1678
TspGWI ACGGA 2 cut(s) 634, 836
TspRI CASTG 7 cut(s) 541, 1182, 1570, 1993, 2104, 2904, 3077
Van91I CCANNNNNTGG 2 cut(s) 415, 1664
VpaK11BI GGWCC 4 cut(s) 909, 1498, 1574, 1725
VspI ATTAAT 1 cut(s) 90
XagI CCTNNNNNAGG 1 cut(s) 3273
XapI RAATTY 2 cut(s) 2240, 2565
XbaI TCTAGA 1 cut(s) 1646
XceI RCATGY 6 cut(s) 462, 807, 1235, 1408, 1868, 3061
ZrmI AGTACT 2 cut(s) 2140, 2491
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.