RchiOBHm_Chr5g0061481

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001311
Physical Location & Seq
Forward (+)
66977327 .. 66984972
7646 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33785

Sequence Viewer

Length: 3135 bp
ATGAGTGATCAGGGAGAAAAGACTTGTCCTCTTTGCGCTGAGGAAATGGATTTGACAGATCAGCAATTGAAACCTTGCAAATGCGGTTATGAGATATGTGTTTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGACTCTGAGGGCCGGTGTCCTGCATGCCGTACCCCTTATGATAAGGAAAAGATTGTAGGGGCTGCGAAGTGTGAGAGATTGGTGGCTGAAATCCATACTGAGAGAAAGAAGTCTCAGAAGACAAAAGTTAAGCCAACCACTGAAGGAAGAAAGCAGCTTAGCAGTGTGCGAGTGATTCAACGGAACCTTGTTTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCTACTGCAGCGTAAAGAATATTTTGCTCAATATGGGAAGGTTTTAAAGGTTTCTATGTCTCGGACAGCAGCTGGTGTCATTCAACAATTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAAGAGGAGGAAGCGGTTCGCTGTATTCAAAATGTACATGGGTTTCTATTGGATGGAAGATCTTTGAGGGCTTGCTTTGGTACCACAAAGTATTGTCACGCATGGCTAAGAAATGTGCCTTGCACCAATCCCGATTGTTTGTATCTGCACGAGGTTGGATGTCATGAGGATAGTTTCACTAAAGATGAAATAATTTCTGCATACACTAGGAGTAGAGTACAACAAATTACTGGTACTCTAAACCCTATGCAGCGGCGGTCAGGGAGTGTGTTGCCTCCACCACTAGATGATTACTGTAATAGCAGTTCTGCTTCTACCGCAGGGCCTGTTGTTAAAAATGGTTCAAGTAATACTGGAACCCTCATTAAAGGTTCTCCTCCAAATGGAAGCTCTGGTAGATCTATTGCTCTTCCAGCTGCAGCCTCATGGGGTACGCGTGGTTCAAATTCGCAACCACCAGCTATGCAAATAATATATTCAAACGGACATACAAAACAGAAACCTGATACAGTCAGTTGCACAGTGCCATTTTCTTTGGCTGCTGTTTCTACTGGCCAGGCTTCTATAGTGCATAGCGATGCAGGAAAGAGGCCAACTTTGAATGAAGACAGTCGGACCATGCAAGCTAAAGGTAAACCGGAATCACTGAAAATTGTGAAACAACACATTAGTGTGGATAGTCAAATTGCCCTGTCGGACAATCCTGCTGCACCCGATGAAGCTTCTGCTTCTGTTAATGTTAGCAGTCAGTTATCTTGTCCACCTGCATCCAAGGACAACAATAGTGGCAGTAGTATGCAGCCAACTTGCACTGCCACCAACCATAATCGGCAGCCTTTTAGTTCCTGTCATGAAAGTGATAGTATTGTTTCTAATGAAGAAGCCACCCAAAGCTTATGCTCCGATATATCTTTAATGAGCATTGATAGAAATTCTATGCTTGATCATTCTGGTGTAGTCGGACCTAATAATTCAGCTTCAGATAATTCGTATATTAAATCGCCTCGGGACCAAGGGTTACAACAATATTGTGCTGAACAGCCTAGAGAATCTCCTATAACAACTGAGAGAGCAGTAACAAGAGAACAATCCAACTGGTTATCAGAGTCACAACCATTACCTAGTATATCTTCTGAGGTGGAGGAGGATGTACTGTCTTTTGATAATCAAAGACTCAAGGACCCAGAAGTGAGTCGTGCGCCGTATCTGTCTAGTTTGCCCAATGCAGTCCATGTTCCAAATCACTCTAGGTCTCCGTTGCTACCTAGTGAGGGTTATGGTGCAGTTTATTCAAGTGCTGATCGCCTTTTTGTAGATAATAAAATTAGGGACAGCTCACTTCTATCTTCAACCAACATTCCGGTACAATCTAATGGTTACCATGAGAATTTTGTAAGCAGCTCTTCTGGTTTAGAGAAGCCTTTGGAGCATTCATTTCTTAACCGAAATGAAAGCCTGGGGAAGCATGGTCGAAGATTCTTGGGTGATGCAGCTAATCCTGATTTCAGTAATGCTGTAGACAAGGGAGAGAGCAGCATAATCTCAAATATATTATCAATGGACTTTGACACTTGGGATGACCCAATAACATCGCCTCAAAATTTCTCCAAGTTTTTGGGTGAATCTGATAGACAGTCTGGATCTCAGAAACATTCCAGTTCGTGGAAGGTGCCAAATAATAATCAGTCAAGATTCTCTTTCGCAAGACAGGAGGATTCTAGAAATCAGGCATTTGATCTACAGTCATCTCAGAATGTCATTGGGCGGTTGTCACAGAACCAGGCACAGAACCAAGGATTCCATCATGGCTATTCTGAAAATCGAGATTTATGTTTGGATAATTTTGGAAGTGGAAATGGGTTTGCTTCTAGTACTTTTGAAGATTCTGAAAATCACGCCAACAATCTTTTAGCCTTCTCTTCTAACAAGCTTTCTGCAGTTTCAAGGGCTCAAATCTCTGCTCCTCCAGGATTCTCTGTGCCAAGCAGGGCCCCACCTCCGGGCTTTACTTCTCAAGAGAGAATAGAGCATGATTTTGACTCACTGTCTGGGAATCTTTTGCATGATAACTCCTCTCTGTTGAGAAATGCCTATCAACCTCAGCCCACGGGGAATATTGGTAGCTCTGTGGATATTGAGTTTATGGATCCTGCTATATTGGCAGTTGGTAAAGGGAGACTGCAAGGTGGGCTTAACAACCCTGGTGTAGATATGAGATCCAACTTCCCTTCACAGTTAAGTGCCTTTGAAAACGATGCAAGACTTCAGCTCTTGATGCAAAGATCCTTCTCCCAACAACAAAACCTTAGGTATCCTGATTTTGGGGATGGCTATTCTCATGTCAATGATAACTATGGAATGTCTTCGAGACTTTTGGATCAATCTCAGGCAAGCAATATGTCGCCTTTTGCTCAACTCTCTCTCCAACAATCCAGAAATAATCGGTCCATGTCAAATGGCCATTGGGATGGGTGGAATGAGGTTCAGGGCGGTAACACTATGGGTATGGCAGAGCTCCTGAGAAATGAGAGAGTAAATGAGAGACTAGGATACAATAAGTTCTATTCTGGTTATGAAGAATCAAAGTTTCGGATGCCCAGTTCTGGCGATCTGTATAACAGAACCTTTGGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

1044

Amino Acids

114.81

Weight (kDa)

5.99

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 9 - 61 1.6e-19 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1270
Acc36I ACCTGC 1 cut(s) 1270
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 3 cut(s) 111, 578, 2167
AccB7I CCANNNNNTGG 2 cut(s) 121, 2160
AccI GTMKAC 1 cut(s) 2016
AccII CGCG 1 cut(s) 934
AciI CCGC 7 cut(s) 84, 512, 751, 754, 816, 2263, 2988
AclWI GGATC 6 cut(s) 2146, 2639, 2652, 2709, 2775, 2883
AcoI YGGCCR 2 cut(s) 1051, 2956
AcsI RAATTY 4 cut(s) 943, 1429, 1885, 2098
AcuI CTGAAG 3 cut(s) 303, 1461, 2747
AfaI GTAC 9 cut(s) 172, 534, 580, 717, 733, 931, 1650, 1863, 2371
AfiI CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2497, 2498, 2819, 3101
AflIII ACRYGT 2 cut(s) 473, 932
AhdI GACNNNNNGTC 1 cut(s) 2542
AjnI CCWGG 5 cut(s) 1053, 1953, 2277, 2464, 2698
AleI CACNNNNGTG 1 cut(s) 1167
AloI GAACNNNNNNTCC 2 cut(s) 3082, 3114
Alw21I GWGCWC 1 cut(s) 3015
Alw26I GTCTC 6 cut(s) 258, 435, 1755, 2668, 2860, 3034
AlwI GGATC 6 cut(s) 2146, 2639, 2652, 2709, 2775, 2883
AlwNI CAGNNNCTG 2 cut(s) 443, 824
Ama87I CYCGRG 1 cut(s) 1503
AoxI GGCC 6 cut(s) 151, 821, 1051, 1088, 2487, 2956
ApaI GGGCCC 1 cut(s) 2491
ApoI RAATTY 4 cut(s) 943, 1429, 1885, 2098
Asp700I GAANNNNTTC 2 cut(s) 513, 2860
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 2 cut(s) 38, 1699
AspS9I GGNCC 9 cut(s) 151, 821, 1113, 1460, 1507, 1678, 2487, 2488, 2943
AsuC2I CCSGG 1 cut(s) 2499
AsuHPI GGTGA 2 cut(s) 1994, 2129
AvaI CYCGRG 1 cut(s) 1503
AvaII GGWCC 5 cut(s) 1113, 1460, 1507, 1678, 2943
AxyI CCTNAGG 1 cut(s) 2804
BaeGI GKGCMC 1 cut(s) 2491
BalI TGGCCA 2 cut(s) 1053, 2958
BamHI GGATCC 1 cut(s) 2644
BanI GGYRCC 3 cut(s) 111, 578, 2167
BanII GRGCYC 3 cut(s) 2449, 2491, 3015
BauI CACGAG 1 cut(s) 647
BbsI GAAGAC 3 cut(s) 266, 1110, 2853
Bbv12I GWGCWC 1 cut(s) 3015
BbvCI CCTCAGC 2 cut(s) 39, 2598
BccI CCATC 4 cut(s) 545, 2307, 2819, 2960
BceAI ACGGC 2 cut(s) 153, 1684
BciT130I CCWGG 5 cut(s) 1055, 1955, 2279, 2466, 2700
BciVI GTATCC 2 cut(s) 2820, 3041
BclI TGATCA 2 cut(s) 7, 1441
BcnI CCSGG 1 cut(s) 2499
BcoDI GTCTC 6 cut(s) 258, 435, 1755, 2668, 2860, 3034
BfmI CTRYAG 6 cut(s) 377, 915, 1062, 2013, 2237, 2433
BfuAI ACCTGC 1 cut(s) 1270
BfuI GTATCC 2 cut(s) 2820, 3041
BglII AGATCT 3 cut(s) 370, 557, 896
BlpI GCTNAGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 2371
Bme1390I CCNGG 6 cut(s) 1055, 1955, 2279, 2466, 2499, 2700
Bme18I GGWCC 5 cut(s) 1113, 1460, 1507, 1678, 2943
BmeRI GACNNNNNGTC 1 cut(s) 2542
BmeT110I CYCGRG 1 cut(s) 1503
BmgT120I GGNCC 9 cut(s) 151, 821, 1113, 1460, 1507, 1678, 2487, 2488, 2943
BmrFI CCNGG 6 cut(s) 1055, 1955, 2279, 2466, 2499, 2700
BmrI ACTGGG 1 cut(s) 3090
BmsI GCATC 6 cut(s) 1066, 1274, 1975, 2743, 2763, 3081
BmuI ACTGGG 1 cut(s) 3090
BpiI GAAGAC 3 cut(s) 266, 1110, 2853
BpmI CTGGAG 1 cut(s) 2448
Bpu10I CCTNAGC 2 cut(s) 39, 2598
Bpu1102I GCTNAGC 1 cut(s) 299
BpuEI CTTGAG 2 cut(s) 1658, 2496
BpuMI CCSGG 1 cut(s) 2499
BsaBI GATNNNNATC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 1755
BsaJI CCNNGG 7 cut(s) 1269, 1502, 1510, 1954, 2290, 2604, 2698
BsaWI WCCGGW 2 cut(s) 1135, 1858
BsaXI ACNNNNNCTCC 2 cut(s) 2904, 2934
Bsc4I CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2497, 2498, 2819, 3101
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 6 cut(s) 733, 856, 1054, 1598, 2154, 3096
Bse21I CCTNAGG 1 cut(s) 2804
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 5 cut(s) 1055, 1955, 2279, 2466, 2700
BseDI CCNNGG 7 cut(s) 1269, 1502, 1510, 1954, 2290, 2604, 2698
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2497, 2498, 2819, 3101
BseNI ACTGG 6 cut(s) 733, 856, 1054, 1598, 2154, 3096
BseRI GAGGAG 5 cut(s) 518, 864, 1655, 2451, 2560
BseSI GKGCMC 1 cut(s) 2491
BsgI GTGCAG 3 cut(s) 629, 1191, 1800
Bsh1236I CGCG 1 cut(s) 934
BshFI GGCC 6 cut(s) 153, 823, 1053, 1090, 2489, 2958
BshNI GGYRCC 3 cut(s) 111, 578, 2167
BsiHKAI GWGCWC 1 cut(s) 3015
BsiHKCI CYCGRG 1 cut(s) 1503
BsiSI CCGG 4 cut(s) 154, 1136, 1859, 2498
BslFI GGGAC 2 cut(s) 1520, 1841
BslI CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2497, 2498, 2819, 3101
BsmAI GTCTC 6 cut(s) 258, 435, 1755, 2668, 2860, 3034
BsmFI GGGAC 2 cut(s) 1520, 1841
BsmI GAATGC 1 cut(s) 1927
BsnI GGCC 6 cut(s) 153, 823, 1053, 1090, 2489, 2958
Bso31I GGTCTC 1 cut(s) 1755
BsoBI CYCGRG 1 cut(s) 1503
Bsp120I GGGCCC 1 cut(s) 2487
Bsp1286I GDGCHC 3 cut(s) 2449, 2491, 3015
Bsp1407I TGTACA 1 cut(s) 532
Bsp1720I GCTNAGC 1 cut(s) 299
BspACI CCGC 7 cut(s) 84, 512, 751, 754, 816, 2263, 2988
BspANI GGCC 6 cut(s) 153, 823, 1053, 1090, 2489, 2958
BspFNI CGCG 1 cut(s) 934
BspHI TCATGA 2 cut(s) 661, 1348
BspMAI CTGCAG 3 cut(s) 381, 919, 2437
BspMI ACCTGC 1 cut(s) 1270
BspPI GGATC 6 cut(s) 2146, 2639, 2652, 2709, 2775, 2883
BspQI GCTCTTC 2 cut(s) 912, 1906
BspT107I GGYRCC 3 cut(s) 111, 578, 2167
BspTNI GGTCTC 1 cut(s) 1755
BsrFI RCCGGY 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 6 cut(s) 733, 856, 1054, 1598, 2154, 3096
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 7 cut(s) 1269, 1502, 1510, 1954, 2290, 2604, 2698
BssSI CACGAG 1 cut(s) 647
BssT1I CCWWGG 3 cut(s) 1269, 1510, 2290
Bst2BI CACGAG 1 cut(s) 647
Bst2UI CCWGG 5 cut(s) 1055, 1955, 2279, 2466, 2700
Bst4CI ACNGT 9 cut(s) 794, 1009, 1021, 1109, 1653, 2133, 2241, 2544, 2733
Bst6I CTCTTC 3 cut(s) 912, 1906, 2422
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 166, 571, 1122, 2890
BstDSI CCRYGG 1 cut(s) 2604
BstEII GGTNACC 1 cut(s) 1874
BstFNI CGCG 1 cut(s) 934
BstHHI GCGC 2 cut(s) 38, 1699
BstMAI GTCTC 6 cut(s) 258, 435, 1755, 2668, 2860, 3034
BstMWI GCNNNNNNNGC 6 cut(s) 815, 911, 1924, 2657, 2686, 2773
BstNI CCWGG 5 cut(s) 1055, 1955, 2279, 2466, 2700
BstNSI RCATGY 2 cut(s) 168, 477
BstPI GGTNACC 1 cut(s) 1874
BstSCI CCNGG 6 cut(s) 1053, 1953, 2277, 2464, 2497, 2698
BstSFI CTRYAG 6 cut(s) 377, 915, 1062, 2013, 2237, 2433
BstSLI GKGCMC 1 cut(s) 2491
BstUI CGCG 1 cut(s) 934
BstV2I GAAGAC 3 cut(s) 266, 1110, 2853
BstX2I RGATCY 7 cut(s) 370, 557, 896, 2138, 2644, 2714, 2780
BstXI CCANNNNNNTGG 2 cut(s) 2113, 2966
BstYI RGATCY 7 cut(s) 370, 557, 896, 2138, 2644, 2714, 2780
Bsu36I CCTNAGG 1 cut(s) 2804
BsuI GTATCC 2 cut(s) 2820, 3041
BsuRI GGCC 6 cut(s) 153, 823, 1053, 1090, 2489, 2958
BtgI CCRYGG 1 cut(s) 2604
BtgZI GCGATG 2 cut(s) 1089, 2073
BtsI GCAGTG 2 cut(s) 310, 1308
BtsIMutI CAGTG 6 cut(s) 279, 310, 1026, 1142, 1308, 2540
BveI ACCTGC 1 cut(s) 1270
Cac8I GCNNGC 4 cut(s) 166, 571, 1122, 2890
CaiI CAGNNNCTG 2 cut(s) 443, 824
CciI TCATGA 2 cut(s) 661, 1348
CfoI GCGC 2 cut(s) 38, 1699
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 9 cut(s) 151, 821, 1113, 1460, 1507, 1678, 2487, 2488, 2943
Csp6I GTAC 9 cut(s) 171, 533, 579, 716, 732, 930, 1649, 1862, 2370
CspCI CAANNNNNGTGG 2 cut(s) 1264, 1299
CviQI GTAC 9 cut(s) 171, 533, 579, 716, 732, 930, 1649, 1862, 2370
DraI TTTAAA 1 cut(s) 417
DriI GACNNNNNGTC 1 cut(s) 2542
EaeI YGGCCR 2 cut(s) 1051, 2956
Eam1104I CTCTTC 3 cut(s) 912, 1906, 2422
Eam1105I GACNNNNNGTC 1 cut(s) 2542
EarI CTCTTC 3 cut(s) 912, 1906, 2422
Ecl136II GAGCTC 1 cut(s) 3013
Eco130I CCWWGG 3 cut(s) 1269, 1510, 2290
Eco24I GRGCYC 3 cut(s) 2449, 2491, 3015
Eco31I GGTCTC 1 cut(s) 1755
Eco47I GGWCC 5 cut(s) 1113, 1460, 1507, 1678, 2943
Eco53kI GAGCTC 1 cut(s) 3013
Eco57I CTGAAG 3 cut(s) 303, 1461, 2747
Eco81I CCTNAGG 1 cut(s) 2804
Eco88I CYCGRG 1 cut(s) 1503
Eco91I GGTNACC 1 cut(s) 1874
EcoICRI GAGCTC 1 cut(s) 3013
EcoO109I RGGNCCY 4 cut(s) 821, 1678, 2487, 2488
EcoO65I GGTNACC 1 cut(s) 1874
EcoRII CCWGG 5 cut(s) 1053, 1953, 2277, 2464, 2698
EcoT14I CCWWGG 3 cut(s) 1269, 1510, 2290
EcoT38I GRGCYC 3 cut(s) 2449, 2491, 3015
ErhI CCWWGG 3 cut(s) 1269, 1510, 2290
FalI AAGNNNNNCTT 6 cut(s) 1885, 1917, 2179, 2211, 2673, 2705
FaqI GGGAC 2 cut(s) 1520, 1841
FbaI TGATCA 2 cut(s) 7, 1441
FblI GTMKAC 1 cut(s) 2016
FokI GGATG 9 cut(s) 152, 563, 669, 1252, 1658, 2087, 2837, 2978, 3103
FriOI GRGCYC 3 cut(s) 2449, 2491, 3015
GlaI GCGC 2 cut(s) 37, 1698
GsuI CTGGAG 1 cut(s) 2448
HaeIII GGCC 6 cut(s) 153, 823, 1053, 1090, 2489, 2958
HapII CCGG 4 cut(s) 154, 1136, 1859, 2498
HhaI GCGC 2 cut(s) 38, 1699
Hin6I GCGC 2 cut(s) 36, 1697
HinP1I GCGC 2 cut(s) 36, 1697
HindIII AAGCTT 3 cut(s) 1218, 1390, 2426
HpaII CCGG 4 cut(s) 154, 1136, 1859, 2498
HphI GGTGA 2 cut(s) 1994, 2129
Hpy166II GTNNAC 4 cut(s) 334, 1133, 1259, 2017
Hpy8I GTNNAC 4 cut(s) 334, 1133, 1259, 2017
HpyAV CCTTC 7 cut(s) 130, 278, 403, 2158, 2422, 2736, 2794
HpyCH4III ACNGT 9 cut(s) 794, 1009, 1021, 1109, 1653, 2133, 2241, 2544, 2733
HpyF10VI GCNNNNNNNGC 6 cut(s) 815, 911, 1924, 2657, 2686, 2773
HspAI GCGC 2 cut(s) 36, 1697
KpnI GGTACC 1 cut(s) 582
Ksp22I TGATCA 2 cut(s) 7, 1441
LguI GCTCTTC 2 cut(s) 912, 1906
LmnI GCTCC 4 cut(s) 1403, 1924, 2464, 3018
LweI GCATC 6 cut(s) 1066, 1274, 1975, 2743, 2763, 3081
MaeIII GTNAC 7 cut(s) 593, 1515, 1573, 1605, 1874, 2268, 2990
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 7 cut(s) 370, 557, 896, 2138, 2644, 2714, 2780
MhlI GDGCHC 3 cut(s) 2449, 2491, 3015
MlsI TGGCCA 2 cut(s) 1053, 2958
MluI ACGCGT 1 cut(s) 932
MluNI TGGCCA 2 cut(s) 1053, 2958
MlyI GAGTC 5 cut(s) 137, 1613, 1665, 1699, 2531
MmeI TCCRAC 7 cut(s) 634, 1091, 1173, 1438, 1614, 2742, 2947
Mox20I TGGCCA 2 cut(s) 1053, 2958
MroXI GAANNNNTTC 2 cut(s) 513, 2860
MscI TGGCCA 2 cut(s) 1053, 2958
MslI CAYNNNNRTG 7 cut(s) 1074, 1167, 1169, 1353, 1449, 2841, 2964
Msp20I TGGCCA 2 cut(s) 1053, 2958
MspA1I CMGCKG 3 cut(s) 443, 751, 914
MspI CCGG 4 cut(s) 154, 1136, 1859, 2498
MspR9I CCNGG 6 cut(s) 1055, 1955, 2279, 2466, 2499, 2700
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 1927
MvaI CCWGG 5 cut(s) 1055, 1955, 2279, 2466, 2700
MvnI CGCG 1 cut(s) 934
MwoI GCNNNNNNNGC 6 cut(s) 815, 911, 1924, 2657, 2686, 2773
NciI CCSGG 1 cut(s) 2499
NmuCI GTSAC 3 cut(s) 593, 1605, 2268
NspI RCATGY 2 cut(s) 168, 477
OliI CACNNNNGTG 1 cut(s) 1167
PaeI GCATGC 1 cut(s) 168
PagI TCATGA 2 cut(s) 661, 1348
PaqCI CACCTGC 1 cut(s) 1270
PciI ACATGT 1 cut(s) 473
PciSI GCTCTTC 2 cut(s) 912, 1906
PctI GAATGC 1 cut(s) 1927
PdmI GAANNNNTTC 2 cut(s) 513, 2860
PflMI CCANNNNNTGG 2 cut(s) 121, 2160
PfoI TCCNGGA 1 cut(s) 2464
PleI GAGTC 5 cut(s) 137, 1612, 1665, 1698, 2531
PpsI GAGTC 5 cut(s) 137, 1612, 1665, 1698, 2531
PpuMI RGGWCCY 1 cut(s) 1678
PscI ACATGT 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 3015
Psp5II RGGWCCY 1 cut(s) 1678
Psp6I CCWGG 5 cut(s) 1053, 1953, 2277, 2464, 2698
PspEI GGTNACC 1 cut(s) 1874
PspGI CCWGG 5 cut(s) 1053, 1953, 2277, 2464, 2698
PspOMI GGGCCC 1 cut(s) 2487
PspPI GGNCC 9 cut(s) 151, 821, 1113, 1460, 1507, 1678, 2487, 2488, 2943
PspPPI RGGWCCY 1 cut(s) 1678
PsrI GAACNNNNNNTAC 6 cut(s) 317, 349, 787, 819, 922, 954
PstI CTGCAG 3 cut(s) 381, 919, 2437
PstNI CAGNNNCTG 2 cut(s) 443, 824
PsuI RGATCY 7 cut(s) 370, 557, 896, 2138, 2644, 2714, 2780
PvuII CAGCTG 2 cut(s) 443, 914
RsaI GTAC 9 cut(s) 172, 534, 580, 717, 733, 931, 1650, 1863, 2371
RsaNI GTAC 9 cut(s) 171, 533, 579, 716, 732, 930, 1649, 1862, 2370
RseI CAYNNNNRTG 7 cut(s) 1074, 1167, 1169, 1353, 1449, 2841, 2964
SacI GAGCTC 1 cut(s) 3015
SapI GCTCTTC 2 cut(s) 912, 1906
Sau96I GGNCC 9 cut(s) 151, 821, 1113, 1460, 1507, 1678, 2487, 2488, 2943
ScaI AGTACT 1 cut(s) 2371
SchI GAGTC 5 cut(s) 137, 1613, 1665, 1699, 2531
ScrFI CCNGG 6 cut(s) 1055, 1955, 2279, 2466, 2499, 2700
SduI GDGCHC 3 cut(s) 2449, 2491, 3015
SfaNI GCATC 6 cut(s) 1066, 1274, 1975, 2743, 2763, 3081
SfcI CTRYAG 6 cut(s) 377, 915, 1062, 2013, 2237, 2433
SinI GGWCC 5 cut(s) 1113, 1460, 1507, 1678, 2943
SmiMI CAYNNNNRTG 7 cut(s) 1074, 1167, 1169, 1353, 1449, 2841, 2964
SmlI CTYRAG 2 cut(s) 1673, 2511
SmoI CTYRAG 2 cut(s) 1673, 2511
SphI GCATGC 1 cut(s) 168
SsiI CCGC 7 cut(s) 84, 512, 751, 754, 816, 2263, 2988
SspI AATATT 3 cut(s) 392, 1526, 2614
SstI GAGCTC 1 cut(s) 3015
StyD4I CCNGG 6 cut(s) 1053, 1953, 2277, 2464, 2497, 2698
StyI CCWWGG 3 cut(s) 1269, 1510, 2290
TaaI ACNGT 9 cut(s) 794, 1009, 1021, 1109, 1653, 2133, 2241, 2544, 2733
TaqI TCGA 3 cut(s) 1969, 2320, 2864
TaqII GACCGA 1 cut(s) 2931
TatI WGTACW 4 cut(s) 532, 715, 1648, 2369
TauI GCSGC 1 cut(s) 754
TscAI CASTG 6 cut(s) 286, 310, 1026, 1149, 1315, 2547
TseFI GTSAC 3 cut(s) 593, 1605, 2268
Tsp45I GTSAC 3 cut(s) 593, 1605, 2268
TspDTI ATGAA 9 cut(s) 381, 699, 1116, 1230, 1365, 1389, 1920, 1962, 3087
TspGWI ACGGA 3 cut(s) 337, 996, 1743
TspRI CASTG 6 cut(s) 286, 310, 1026, 1149, 1315, 2547
Van91I CCANNNNNTGG 2 cut(s) 121, 2160
VpaK11BI GGWCC 5 cut(s) 1113, 1460, 1507, 1678, 2943
XapI RAATTY 4 cut(s) 943, 1429, 1885, 2098
XbaI TCTAGA 1 cut(s) 2216
XceI RCATGY 2 cut(s) 168, 477
XmiI GTMKAC 1 cut(s) 2016
XmnI GAANNNNTTC 2 cut(s) 513, 2860
ZrmI AGTACT 1 cut(s) 2371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.