MD11G1121300.v1.1

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001311
Physical Location & Seq
Reverse (-)
11177910 .. 11187719
9810 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1121300.v1.1.491

Sequence Viewer

Length: 3054 bp
ATGGATTTGACAGATCAGCAATTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGAGACAGATGGGCGGTGTCCTGCATGCCGCACTCCTTATGACAAGGAAAAGATTGTAGGAACAGCTGGAAAGTGTGAGAGGCTGGTTTTAGAAATCAACACTGAGAAAAAGATGAAATCTCAGAAGGCAAAAGTCAAATCTGCTGAAGGGCGGAAGCAGCTCACTAGTGTGCGAGTGATTCAACGGAACCTCGTTTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCTTCTGCAGCGCAAAGAATATTTTGGTCAGTATGGGAAGGTTCAAAAAGTTTCCATGTCTCGAACAGCAGCTGGCGTCATTCAGCAATTTCCAAACAATACATGTAGTGTATATATTACATACTCAAAAGAGGAGGAAGCGGTTCGTTGTATTCAAAATGTACATGGGTTCCTCTTGGATGGTAGATCTTTGAGGGCTTGCTTTGGGACCACAAAATATTGTCATGCATGGCTGAGGAATGTGCCTTGCACCAATCCTGATTGTTTGTATCTGCATGAGGTTGGGTCTCAGGAGGATAGTTTCACTAAAGATGAAATAATTTCTGCATACACTAGGGTACAACAAATTACTGGTACAGCAAACAGTATGCAACGGCGTTCGGGGAGTGTTTTGCCTCCACCACTAGATGATTATTGCAACACAAGTTCTGCTTCTGCCGCAGGACCAATTATTAAAAATGGATCAAGTAATACTGGAAGTCTTATTAGAGGTTCTCCTCCAAATGGAAGCTCTGGTAGATCTATTGCTCTCCCAGCTGCAGCCTCATGGGGAACACGTGGTTCAAACTGCCAACCACCAGCTACACATATAATAAGTTCAAATGGACATTCTAAACAGAAACCTGATACAGTCAGAAGCACATTGCCATATTCTGCAGCAACTGGTGCTTCTGTTCAGTCATCTACAGTGCATAGTGATGGAGGAAAGATGTCAGCATTAAATGAAGAAAGTCAGACTTTGCATGCTAAATGTAAACCAGAATCATTGAAGATTGTGAAACAGCATAGTGGTGTGGATTGTCAAAATGATCTGTCTGACGTACCTGCTGCACCTGATGAAGGTTCTGCTTCTGTTAATGTTAGCAACCAGTTATTGGCGACATCTGTATCCAAGGAAAATGATAGAGGCAGTAGCATGCAGCCAAACATTAGCAATCCTACCAACCATCTATCATACAGTTCCGCTCATGAAAAAGAAAACATTGTTTCCACTGAAGAAGTGGTCCAAAACTTATGCTCTGATATCCATTTAATGAGCATTGATAGAAATACCAAGGTTGAAAATTCCAGTATAGCCAGATCTAAGAGTTCACCTTCAGATAACTCCTTTATTAAATCGCCTCGGGACCAACAATATTGTGCTGAGCAGTCTAGAGATCCTCCATCAACTGGTGAGAAAGCTGTCACATCGGTTAATGGGGTGTGTATTACAAAGGAACAATCCAACTGGATGTTAGAGTCACAACCCCAACCAGTGCCAAGTACATCTTCTGAAGTGGAGGAGGATGTACTATCTTTTGACAATCAAAGACTCAAGGATCCAGAAGTGAGTCGGTCAACATATATGCCTAGTTTGCCTAATACAGTACATGCTCCAAATCACTCTAGGCCCCCTTTGTTGCATAATGAGGCTTATGGTGCGGTTTATTCCAATGCTGATTGTCTATTTGTAGATAACAAAGTTGGGGATAGTTCACTTTTATCTAATGGTTACCCTGAAAACATGGTAACCAGATCTTCTGGTTCAGGAAGGCCATTGGAGCATCCCTATCCTCTTCCAAATGAAGTCCCAGGGAAGCACACTGGAAGATTCCTGGATGATGCAGCAAATCCTGATTTCAGTACTGCTGCTGACAAGGGAGAGAGTAGCATAATCTCAAATATATTATCGATGGACTTTGACACATGGGATGATTCACTAACATCACCACAGCATTTCTCCAAATTGTTGGGTGAAACTGATAAACAGTCTGGAGCGCTCAAAATGTCAAGTCCTTGGAAAGTACAAAATAATAATCAGTCCAGATTCTCTTTTGCAAGACAGGAGGATGCTAAAAATCAAGCATTTGATTTACAGTCATCTCTGAATGTCGATGGGCAGTTTTCTAATAACCAGTCATTCCATCAGGGCTTTTCTGAAAATAGAGATTTATATTTGGATAATCTAGGAATTGGTAATGGTTTCCCATCTAGTACTTTTGAAGAATCTGAAAGTCATGCCAGAAATCATTTAGCATTCTCTTCTAACAAGCTTTCTGCGGTTTCAAGGGCTCAAATTTCTGCTCCTCCTGGATTCTCTGTGCCAAGCAGGGCACCACCTCCGGGCTTTACTTCTCATGAGAGAGTGGATCAGGATTTTGACACTATGTCTGGGAATCATATGTATGGTACTTCAACTTTGTTGAGAAACGCATATCAACCTCAGGCAAATGGAAATATTGGGAGCTCTGCAGATATTGAGTTTATGGATCCTGCTATATTGGCAGTTGGTAAGGGGAGACTGCAAGGTGGGCTTAACAACCCAGGCCTAGAAATGAGATCAAATTTTCCTTCGCAGTTGAGTGGGTATGAAAACGATGCAAGGCTTCAACTATTGATGCAAAGATCACTCGCCCCACAACAAAACCTTAGATATCCTGATTTTGGGGATGGTTTTTCTCACGTCAATGATTCTTATGGGATCTCCTCAAGGCTTTTGGAGCAGTCCCAGGCTAGCAATCTTTCTCCTTTTTCTCAAATGTCCCTCCAACAGTCCAGAAACCGGGTCATGTCAAATGGCCACTGGGATGGGTGGAATGAGGTCCAGGGTGGAAGCAATGTAAGTATGGCAGAGCTCCTGAGAAATGAGAGACTAGGATTCAACAAGTTTTATTCTGGTTATGAAGAATCAAAGTTTCGGATGCCCAGTTCAGGCGATCTGTATAATAGAACATTTGGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

1018

Amino Acids

111.54

Weight (kDa)

5.99

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 1 - 46 3.2e-16 RING/Ubox like zinc-binding domain
RRM_1 PF00076 97 - 175 9e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1162
AccB1I GGYRCC 2 cut(s) 66, 2422
AccB7I CCANNNNNTGG 3 cut(s) 76, 1204, 1499
AccBSI CCGCTC 1 cut(s) 1295
AciI CCGC 8 cut(s) 109, 124, 247, 470, 768, 1293, 1751, 2369
AclWI GGATC 8 cut(s) 799, 1481, 1643, 1656, 2466, 2573, 2586, 2798
AcoI YGGCCR 1 cut(s) 2887
AcsI RAATTY 3 cut(s) 1393, 2385, 2653
AcuI CTGAAG 4 cut(s) 261, 1344, 1410, 1623
AcvI CACGTG 1 cut(s) 887
AcyI GRCGYC 1 cut(s) 405
AfeI AGCGCT 1 cut(s) 2088
AfiI CCNNNNNNNGG 9 cut(s) 76, 833, 1169, 1204, 1499, 2432, 2753, 2871, 3020
AflIII ACRYGT 2 cut(s) 431, 884
AhdI GACNNNNNGTC 1 cut(s) 2476
AhlI ACTAGT 1 cut(s) 260
AjiI CACGTC 1 cut(s) 2773
AjnI CCWGG 6 cut(s) 1900, 1923, 2398, 2632, 2817, 2913
AjuI GAANNNNNNNTTGG 2 cut(s) 1582, 1614
AleI CACNNNNGTG 1 cut(s) 263
AloI GAACNNNNNNTCC 2 cut(s) 3001, 3033
Alw21I GWGCWC 2 cut(s) 2558, 2946
Alw26I GTCTC 5 cut(s) 92, 393, 621, 2602, 2953
AlwI GGATC 8 cut(s) 799, 1481, 1643, 1656, 2466, 2573, 2586, 2798
AlwNI CAGNNNCTG 2 cut(s) 401, 992
Ama87I CYCGRG 1 cut(s) 1452
Aor51HI AGCGCT 1 cut(s) 2088
AoxI GGCC 4 cut(s) 1718, 1862, 2635, 2887
ApoI RAATTY 3 cut(s) 1393, 2385, 2653
Asp700I GAANNNNTTC 2 cut(s) 330, 471
AspLEI GCGC 2 cut(s) 342, 2089
AspS9I GGNCC 6 cut(s) 537, 773, 1333, 1456, 1719, 2911
AsuC2I CCSGG 2 cut(s) 2433, 2873
AsuHPI GGTGA 4 cut(s) 1413, 1514, 2028, 2075
AsuNHI GCTAGC 1 cut(s) 2822
AvaI CYCGRG 1 cut(s) 1452
AvaII GGWCC 5 cut(s) 537, 773, 1333, 1456, 2911
AxyI CCTNAGG 1 cut(s) 2532
BaeGI GKGCMC 1 cut(s) 2425
BaeI ACNNNNGTAYC 2 cut(s) 1200, 1233
BalI TGGCCA 1 cut(s) 2889
BamHI GGATCC 2 cut(s) 1648, 2578
BanI GGYRCC 2 cut(s) 66, 2422
BanII GRGCYC 3 cut(s) 2383, 2558, 2946
BbrPI CACGTG 1 cut(s) 887
Bbv12I GWGCWC 2 cut(s) 2558, 2946
BbvCI CCTCAGC 1 cut(s) 563
BceAI ACGGC 1 cut(s) 719
BciT130I CCWGG 6 cut(s) 1902, 1925, 2400, 2634, 2819, 2915
BciVI GTATCC 1 cut(s) 1228
BcnI CCSGG 2 cut(s) 2433, 2873
BcoDI GTCTC 5 cut(s) 92, 393, 621, 2602, 2953
BcuI ACTAGT 1 cut(s) 260
BfmI CTRYAG 5 cut(s) 335, 867, 984, 1014, 2559
BfoI RGCGCY 1 cut(s) 2090
BfuAI ACCTGC 1 cut(s) 1162
BfuI GTATCC 1 cut(s) 1228
BglII AGATCT 5 cut(s) 328, 515, 848, 1409, 1844
BlpI GCTNAGC 1 cut(s) 1473
BmcAI AGTACT 2 cut(s) 1954, 2305
Bme1390I CCNGG 8 cut(s) 1902, 1925, 2400, 2433, 2634, 2819, 2873, 2915
Bme18I GGWCC 5 cut(s) 537, 773, 1333, 1456, 2911
BmeRI GACNNNNNGTC 1 cut(s) 2476
BmeT110I CYCGRG 1 cut(s) 1452
BmgBI CACGTC 1 cut(s) 2773
BmgT120I GGNCC 6 cut(s) 537, 773, 1333, 1456, 1719, 2911
BmiI GGNNCC 9 cut(s) 68, 284, 500, 538, 1457, 1650, 1721, 2424, 2580
BmrFI CCNGG 8 cut(s) 1902, 1925, 2400, 2433, 2634, 2819, 2873, 2915
BmrI ACTGGG 2 cut(s) 2902, 3009
BmsI GCATC 6 cut(s) 1882, 1921, 2149, 2677, 2697, 3000
BmtI GCTAGC 1 cut(s) 2826
BmuI ACTGGG 2 cut(s) 2902, 3009
BpmI CTGGAG 1 cut(s) 2103
Bpu10I CCTNAGC 1 cut(s) 563
Bpu1102I GCTNAGC 1 cut(s) 1473
BpuEI CTTGAG 2 cut(s) 1628, 2782
BpuMI CCSGG 2 cut(s) 2433, 2873
Bsa29I ATCGAT 1 cut(s) 2000
BsaAI YACGTR 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 9 cut(s) 1221, 1383, 1451, 1900, 1901, 2105, 2632, 2817, 2914
Bsc4I CCNNNNNNNGG 9 cut(s) 76, 833, 1169, 1204, 1499, 2432, 2753, 2871, 3020
Bse21I CCTNAGG 1 cut(s) 2532
Bse3DI GCAATG 2 cut(s) 971, 2932
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 6 cut(s) 1902, 1925, 2400, 2634, 2819, 2915
BseCI ATCGAT 1 cut(s) 2000
BseDI CCNNGG 9 cut(s) 1221, 1383, 1451, 1900, 1901, 2105, 2632, 2817, 2914
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 9 cut(s) 76, 833, 1169, 1204, 1499, 2432, 2753, 2871, 3020
BseMI GCAATG 2 cut(s) 971, 2932
BseMII CTCAG 8 cut(s) 78, 189, 230, 554, 632, 1464, 2546, 2939
BseRI GAGGAG 5 cut(s) 476, 816, 1625, 2385, 2785
BseSI GKGCMC 1 cut(s) 2425
BseYI CCCAGC 1 cut(s) 862
BsgI GTGCAG 1 cut(s) 1143
BshFI GGCC 4 cut(s) 1720, 1864, 2637, 2889
BshNI GGYRCC 2 cut(s) 66, 2422
BshVI ATCGAT 1 cut(s) 2000
BsiHKAI GWGCWC 2 cut(s) 2558, 2946
BsiHKCI CYCGRG 1 cut(s) 1452
BsiSI CCGG 2 cut(s) 2432, 2872
BslFI GGGAC 5 cut(s) 550, 1469, 1883, 2800, 2836
BslI CCNNNNNNNGG 9 cut(s) 76, 833, 1169, 1204, 1499, 2432, 2753, 2871, 3020
BsmAI GTCTC 5 cut(s) 92, 393, 621, 2602, 2953
BsmFI GGGAC 5 cut(s) 550, 1469, 1883, 2800, 2836
BsmI GAATGC 1 cut(s) 2345
BsnI GGCC 4 cut(s) 1720, 1864, 2637, 2889
Bso31I GGTCTC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 1452
Bsp1286I GDGCHC 4 cut(s) 2383, 2425, 2558, 2946
Bsp1407I TGTACA 1 cut(s) 490
Bsp1720I GCTNAGC 1 cut(s) 1473
BspACI CCGC 8 cut(s) 109, 124, 247, 470, 768, 1293, 1751, 2369
BspANI GGCC 4 cut(s) 1720, 1864, 2637, 2889
BspCNI CTCAG 8 cut(s) 79, 190, 229, 555, 631, 1465, 2545, 2940
BspDI ATCGAT 1 cut(s) 2000
BspHI TCATGA 2 cut(s) 1297, 2446
BspLI GGNNCC 9 cut(s) 68, 284, 500, 538, 1457, 1650, 1721, 2424, 2580
BspMAI CTGCAG 4 cut(s) 339, 871, 988, 2563
BspMI ACCTGC 1 cut(s) 1162
BspOI GCTAGC 1 cut(s) 2826
BspPI GGATC 8 cut(s) 799, 1481, 1643, 1656, 2466, 2573, 2586, 2798
BspT107I GGYRCC 2 cut(s) 66, 2422
BspTNI GGTCTC 1 cut(s) 621
BsrBI CCGCTC 1 cut(s) 1295
BsrDI GCAATG 2 cut(s) 971, 2932
BsrGI TGTACA 1 cut(s) 490
BssECI CCNNGG 9 cut(s) 1221, 1383, 1451, 1900, 1901, 2105, 2632, 2817, 2914
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 3 cut(s) 1221, 1383, 2105
Bst2UI CCWGG 6 cut(s) 1902, 1925, 2400, 2634, 2819, 2915
Bst4CI ACNGT 8 cut(s) 695, 961, 1018, 1289, 1696, 2079, 2187, 2862
Bst6I CTCTTC 2 cut(s) 1890, 2356
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 887
BstC8I GCNNGC 6 cut(s) 121, 403, 529, 1074, 1247, 2824
BstEII GGTNACC 2 cut(s) 1820, 1837
BstENI CCTNNNNNAGG 1 cut(s) 1167
BstH2I RGCGCY 1 cut(s) 2090
BstHHI GCGC 2 cut(s) 342, 2089
BstMAI GTCTC 5 cut(s) 92, 393, 621, 2602, 2953
BstNI CCWGG 6 cut(s) 1902, 1925, 2400, 2634, 2819, 2915
BstNSI RCATGY 5 cut(s) 123, 435, 1076, 1249, 1703
BstPI GGTNACC 2 cut(s) 1820, 1837
BstSCI CCNGG 8 cut(s) 1900, 1923, 2398, 2431, 2632, 2817, 2871, 2913
BstSFI CTRYAG 5 cut(s) 335, 867, 984, 1014, 2559
BstSLI GKGCMC 1 cut(s) 2425
BstX2I RGATCY 9 cut(s) 328, 515, 848, 1409, 1486, 1648, 1844, 2578, 2790
BstXI CCANNNNNNTGG 2 cut(s) 2059, 2897
BstYI RGATCY 9 cut(s) 328, 515, 848, 1409, 1486, 1648, 1844, 2578, 2790
Bsu15I ATCGAT 1 cut(s) 2000
Bsu36I CCTNAGG 1 cut(s) 2532
BsuI GTATCC 1 cut(s) 1228
BsuRI GGCC 4 cut(s) 1720, 1864, 2637, 2889
BsuTUI ATCGAT 1 cut(s) 2000
BtrI CACGTC 1 cut(s) 2773
BtsIMutI CAGTG 6 cut(s) 195, 1023, 1320, 1590, 1911, 2890
BveI ACCTGC 1 cut(s) 1162
Cac8I GCNNGC 6 cut(s) 121, 403, 529, 1074, 1247, 2824
CaiI CAGNNNCTG 2 cut(s) 401, 992
CciI TCATGA 2 cut(s) 1297, 2446
CfoI GCGC 2 cut(s) 342, 2089
Cfr13I GGNCC 6 cut(s) 537, 773, 1333, 1456, 1719, 2911
ClaI ATCGAT 1 cut(s) 2000
CseI GACGC 1 cut(s) 394
DriI GACNNNNNGTC 1 cut(s) 2476
EaeI YGGCCR 1 cut(s) 2887
Eam1104I CTCTTC 2 cut(s) 1890, 2356
Eam1105I GACNNNNNGTC 1 cut(s) 2476
EarI CTCTTC 2 cut(s) 1890, 2356
EciI GGCGGA 1 cut(s) 262
Ecl136II GAGCTC 2 cut(s) 2556, 2944
Eco130I CCWWGG 3 cut(s) 1221, 1383, 2105
Eco147I AGGCCT 1 cut(s) 2637
Eco24I GRGCYC 3 cut(s) 2383, 2558, 2946
Eco31I GGTCTC 1 cut(s) 621
Eco32I GATATC 2 cut(s) 1354, 2744
Eco47I GGWCC 5 cut(s) 537, 773, 1333, 1456, 2911
Eco47III AGCGCT 1 cut(s) 2088
Eco53kI GAGCTC 2 cut(s) 2556, 2944
Eco57I CTGAAG 4 cut(s) 261, 1344, 1410, 1623
Eco72I CACGTG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 2532
Eco88I CYCGRG 1 cut(s) 1452
Eco91I GGTNACC 2 cut(s) 1820, 1837
EcoICRI GAGCTC 2 cut(s) 2556, 2944
EcoNI CCTNNNNNAGG 1 cut(s) 1167
EcoO109I RGGNCCY 1 cut(s) 1719
EcoO65I GGTNACC 2 cut(s) 1820, 1837
EcoRII CCWGG 6 cut(s) 1900, 1923, 2398, 2632, 2817, 2913
EcoRV GATATC 2 cut(s) 1354, 2744
EcoT14I CCWWGG 3 cut(s) 1221, 1383, 2105
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 3 cut(s) 2383, 2558, 2946
ErhI CCWWGG 3 cut(s) 1221, 1383, 2105
FalI AAGNNNNNCTT 8 cut(s) 745, 777, 1051, 1083, 1582, 1614, 2607, 2639
FaqI GGGAC 5 cut(s) 550, 1469, 1883, 2800, 2836
FauNDI CATATG 1 cut(s) 2490
FriOI GRGCYC 3 cut(s) 2383, 2558, 2946
GlaI GCGC 2 cut(s) 341, 2088
GsaI CCCAGC 1 cut(s) 866
GsuI CTGGAG 1 cut(s) 2103
HaeII RGCGCY 1 cut(s) 2090
HaeIII GGCC 4 cut(s) 1720, 1864, 2637, 2889
HapII CCGG 2 cut(s) 2432, 2872
HgaI GACGC 1 cut(s) 394
HhaI GCGC 2 cut(s) 342, 2089
Hin1I GRCGYC 1 cut(s) 405
Hin6I GCGC 2 cut(s) 340, 2087
HinP1I GCGC 2 cut(s) 340, 2087
HincII GTYRAC 1 cut(s) 1668
HindII GTYRAC 1 cut(s) 1668
HindIII AAGCTT 1 cut(s) 2360
HpaII CCGG 2 cut(s) 2432, 2872
HphI GGTGA 4 cut(s) 1413, 1514, 2028, 2075
Hpy166II GTNNAC 5 cut(s) 292, 1085, 1421, 1668, 1805
Hpy8I GTNNAC 5 cut(s) 292, 1085, 1421, 1668, 1805
HpyAV CCTTC 8 cut(s) 85, 214, 236, 361, 1163, 1434, 1854, 2670
HpyCH4III ACNGT 8 cut(s) 695, 961, 1018, 1289, 1696, 2079, 2187, 2862
HpyCH4IV ACGT 3 cut(s) 886, 1149, 2772
HpySE526I ACGT 3 cut(s) 886, 1149, 2772
Hsp92I GRCGYC 1 cut(s) 405
HspAI GCGC 2 cut(s) 340, 2087
LmnI GCTCC 7 cut(s) 1708, 1870, 2084, 2398, 2553, 2809, 2949
LweI GCATC 6 cut(s) 1882, 1921, 2149, 2677, 2697, 3000
MaeII ACGT 3 cut(s) 886, 1149, 2772
MaeIII GTNAC 4 cut(s) 1513, 1569, 1820, 1837
MbiI CCGCTC 1 cut(s) 1295
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 9 cut(s) 328, 515, 848, 1409, 1486, 1648, 1844, 2578, 2790
MhlI GDGCHC 4 cut(s) 2383, 2425, 2558, 2946
MlsI TGGCCA 1 cut(s) 2889
MluNI TGGCCA 1 cut(s) 2889
MlyI GAGTC 3 cut(s) 1577, 1635, 1669
MmeI TCCRAC 2 cut(s) 1578, 2881
Mox20I TGGCCA 1 cut(s) 2889
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 2 cut(s) 330, 471
MscI TGGCCA 1 cut(s) 2889
MseI TTAA 8 cut(s) 312, 783, 1049, 1185, 1361, 1443, 1524, 2625
MslI CAYNNNNRTG 7 cut(s) 34, 263, 1026, 1119, 2493, 2775, 2895
Msp20I TGGCCA 1 cut(s) 2889
MspA1I CMGCKG 3 cut(s) 161, 401, 866
MspI CCGG 2 cut(s) 2432, 2872
MspR9I CCNGG 8 cut(s) 1902, 1925, 2400, 2433, 2634, 2819, 2873, 2915
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 2345
MvaI CCWGG 6 cut(s) 1902, 1925, 2400, 2634, 2819, 2915
NciI CCSGG 2 cut(s) 2433, 2873
NdeI CATATG 1 cut(s) 2490
NheI GCTAGC 1 cut(s) 2822
NlaIV GGNNCC 9 cut(s) 68, 284, 500, 538, 1457, 1650, 1721, 2424, 2580
NmuCI GTSAC 2 cut(s) 1513, 1569
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 5 cut(s) 123, 435, 1076, 1249, 1703
OliI CACNNNNGTG 1 cut(s) 263
PaeI GCATGC 3 cut(s) 123, 1076, 1249
PagI TCATGA 2 cut(s) 1297, 2446
PasI CCCWGGG 1 cut(s) 1901
PceI AGGCCT 1 cut(s) 2637
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 2345
PdmI GAANNNNTTC 2 cut(s) 330, 471
PflMI CCANNNNNTGG 3 cut(s) 76, 1204, 1499
PfoI TCCNGGA 2 cut(s) 1923, 2398
PleI GAGTC 3 cut(s) 1576, 1635, 1668
PmaCI CACGTG 1 cut(s) 887
PmlI CACGTG 1 cut(s) 887
PpsI GAGTC 3 cut(s) 1576, 1635, 1668
Ppu21I YACGTR 1 cut(s) 887
PscI ACATGT 1 cut(s) 431
Psp124BI GAGCTC 2 cut(s) 2558, 2946
Psp6I CCWGG 6 cut(s) 1900, 1923, 2398, 2632, 2817, 2913
PspCI CACGTG 1 cut(s) 887
PspEI GGTNACC 2 cut(s) 1820, 1837
PspFI CCCAGC 1 cut(s) 862
PspGI CCWGG 6 cut(s) 1900, 1923, 2398, 2632, 2817, 2913
PspN4I GGNNCC 9 cut(s) 68, 284, 500, 538, 1457, 1650, 1721, 2424, 2580
PspPI GGNCC 6 cut(s) 537, 773, 1333, 1456, 1719, 2911
PsrI GAACNNNNNNTAC 2 cut(s) 275, 307
PstI CTGCAG 4 cut(s) 339, 871, 988, 2563
PstNI CAGNNNCTG 2 cut(s) 401, 992
PsuI RGATCY 9 cut(s) 328, 515, 848, 1409, 1486, 1648, 1844, 2578, 2790
PvuII CAGCTG 3 cut(s) 161, 401, 866
RseI CAYNNNNRTG 7 cut(s) 34, 263, 1026, 1119, 2493, 2775, 2895
SacI GAGCTC 2 cut(s) 2558, 2946
SaqAI TTAA 8 cut(s) 312, 783, 1049, 1185, 1361, 1443, 1524, 2625
Sau96I GGNCC 6 cut(s) 537, 773, 1333, 1456, 1719, 2911
ScaI AGTACT 2 cut(s) 1954, 2305
SchI GAGTC 3 cut(s) 1577, 1635, 1669
ScrFI CCNGG 8 cut(s) 1902, 1925, 2400, 2433, 2634, 2819, 2873, 2915
SduI GDGCHC 4 cut(s) 2383, 2425, 2558, 2946
SfaNI GCATC 6 cut(s) 1882, 1921, 2149, 2677, 2697, 3000
SfcI CTRYAG 5 cut(s) 335, 867, 984, 1014, 2559
SinI GGWCC 5 cut(s) 537, 773, 1333, 1456, 2911
SmiMI CAYNNNNRTG 7 cut(s) 34, 263, 1026, 1119, 2493, 2775, 2895
SmlI CTYRAG 2 cut(s) 1643, 2797
SmoI CTYRAG 2 cut(s) 1643, 2797
SpeI ACTAGT 1 cut(s) 260
SphI GCATGC 3 cut(s) 123, 1076, 1249
SseBI AGGCCT 1 cut(s) 2637
SsiI CCGC 8 cut(s) 109, 124, 247, 470, 768, 1293, 1751, 2369
SspI AATATT 4 cut(s) 350, 548, 1466, 2548
SstI GAGCTC 2 cut(s) 2558, 2946
StuI AGGCCT 1 cut(s) 2637
StyD4I CCNGG 8 cut(s) 1900, 1923, 2398, 2431, 2632, 2817, 2871, 2913
StyI CCWWGG 3 cut(s) 1221, 1383, 2105
TaaI ACNGT 8 cut(s) 695, 961, 1018, 1289, 1696, 2079, 2187, 2862
TaiI ACGT 3 cut(s) 889, 1152, 2775
TaqI TCGA 3 cut(s) 391, 2000, 2202
TaqII GACCGA 1 cut(s) 1653
TatI WGTACW 7 cut(s) 490, 1592, 1618, 1696, 1952, 2113, 2303
TauI GCSGC 2 cut(s) 126, 770
Tru1I TTAA 8 cut(s) 312, 783, 1049, 1185, 1361, 1443, 1524, 2625
Tru9I TTAA 8 cut(s) 312, 783, 1049, 1185, 1361, 1443, 1524, 2625
TscAI CASTG 6 cut(s) 202, 1023, 1327, 1590, 1918, 2897
TseFI GTSAC 2 cut(s) 1513, 1569
Tsp45I GTSAC 2 cut(s) 1513, 1569
TspDTI ATGAA 9 cut(s) 224, 339, 657, 1068, 1182, 1314, 1908, 2694, 3006
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 6 cut(s) 202, 1023, 1327, 1590, 1918, 2897
Van91I CCANNNNNTGG 3 cut(s) 76, 1204, 1499
VpaK11BI GGWCC 5 cut(s) 537, 773, 1333, 1456, 2911
XagI CCTNNNNNAGG 1 cut(s) 1167
XapI RAATTY 3 cut(s) 1393, 2385, 2653
XbaI TCTAGA 1 cut(s) 1481
XceI RCATGY 5 cut(s) 123, 435, 1076, 1249, 1703
XcmI CCANNNNNNNNNTGG 1 cut(s) 1327
XmnI GAANNNNTTC 2 cut(s) 330, 471
ZrmI AGTACT 2 cut(s) 1954, 2305
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.