Rorug05G0340800

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001311
Physical Location & Seq
Reverse (-)
41574186 .. 41574657
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0340800.1

Sequence Viewer

Length: 390 bp
ATGACTTCTATTGATGCAATGGTTGCTAGACTAGCCTCCTCTCTTGCTATTGCTGAAGGCAAGAGGGTAAAGGTTTGTGACAGGCGAACGTATTCTTGGAGGGCAAGCTTCTCACAGCTCGATTTCAAGGTGGAGGAAGTAGAAGGGCAGAGGGTTCTCTTCACACTGTCGGACCCAACTGATAGGATTCGAATCTGGCGTGGTGCACCATGGGGGTATAATCACGCTCCAGTGGCTCTAGCATGGTATGATGGTGTCATGCCAGTGGAGAAAGTACCCATGACCACGGTATTGTACTGGATTACTCTTCAGGGAATCCCGCTGACATTCCGGTCTGAGCGTGTCATGACCATGATTGGGTATACACTGGGGGATTTTTCAGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

129

Amino Acids

14.67

Weight (kDa)

8.85

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 362
AciI CCGC 1 cut(s) 320
AcuI CTGAAG 2 cut(s) 75, 293
AfaI GTAC 2 cut(s) 276, 296
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AluBI AGCT 2 cut(s) 108, 118
AluI AGCT 2 cut(s) 108, 118
Alw21I GWGCWC 1 cut(s) 208
Alw44I GTGCAC 1 cut(s) 204
ApaLI GTGCAC 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 1 cut(s) 245
BfaI CTAG 3 cut(s) 27, 32, 239
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 209, 285
BsaWI WCCGGW 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 4 cut(s) 230, 263, 302, 372
Bse3DI GCAATG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 209, 285
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 4 cut(s) 230, 263, 302, 372
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 357
Bsp119I TTCGAA 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 328
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 4 cut(s) 230, 263, 302, 372
BssECI CCNNGG 2 cut(s) 209, 285
BssNAI GTATAC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 209
Bst1107I GTATAC 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 168, 289
Bst6I CTCTTC 2 cut(s) 164, 312
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 2 cut(s) 209, 285
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 233
BstSLI GKGCMC 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 363
BtgI CCRYGG 2 cut(s) 209, 285
BtsIMutI CAGTG 4 cut(s) 164, 237, 270, 365
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 275, 295
CviAII CATG 6 cut(s) 210, 243, 259, 280, 346, 352
CviJI RGCY 4 cut(s) 35, 108, 118, 236
CviKI_1 RGCY 4 cut(s) 35, 108, 118, 236
CviQI GTAC 2 cut(s) 275, 295
DdeI CTNAG 1 cut(s) 336
DrdI GACNNNNNNGTC 1 cut(s) 331
DseDI GACNNNNNNGTC 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 164, 312
EarI CTCTTC 2 cut(s) 164, 312
Eco130I CCWWGG 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 2 cut(s) 75, 293
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 6 cut(s) 213, 246, 262, 283, 349, 355
FaiI YATR 9 cut(s) 211, 219, 244, 249, 260, 281, 347, 353, 363
FatI CATG 6 cut(s) 209, 242, 258, 279, 345, 351
FauI CCCGC 1 cut(s) 327
FblI GTMKAC 1 cut(s) 362
FspBI CTAG 3 cut(s) 27, 32, 239
GsuI CTGGAG 1 cut(s) 213
HapII CCGG 1 cut(s) 331
Hin1II CATG 6 cut(s) 213, 246, 262, 283, 349, 355
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 3 cut(s) 187, 192, 315
HpaII CCGG 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 206, 363
Hpy188I TCNGA 2 cut(s) 172, 337
Hpy188III TCNNGA 2 cut(s) 346, 381
Hpy8I GTNNAC 2 cut(s) 206, 363
HpyAV CCTTC 2 cut(s) 50, 137
HpyCH4III ACNGT 2 cut(s) 168, 289
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 17, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 233
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 6 cut(s) 213, 246, 262, 283, 349, 355
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 9 cut(s) 67, 181, 243, 276, 283, 296, 344, 353, 366
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 27, 32, 239
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 77
MboII GAAGA 2 cut(s) 151, 299
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 6 cut(s) 46, 49, 57, 93, 127, 144
MroXI GAANNNNTTC 1 cut(s) 91
MslI CAYNNNNRTG 2 cut(s) 263, 350
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 331
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 233
NcoI CCATGG 1 cut(s) 209
NlaIII CATG 6 cut(s) 213, 246, 262, 283, 349, 355
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 77
NspV TTCGAA 1 cut(s) 190
PagI TCATGA 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 91
PfeI GAWTC 3 cut(s) 187, 192, 315
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 172
RsaI GTAC 2 cut(s) 276, 296
RsaNI GTAC 2 cut(s) 275, 295
RseI CAYNNNNRTG 2 cut(s) 263, 350
Sau96I GGNCC 1 cut(s) 172
SduI GDGCHC 1 cut(s) 208
SetI ASST 5 cut(s) 75, 92, 110, 120, 132
SfaNI GCATC 1 cut(s) 4
SfuI TTCGAA 1 cut(s) 190
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 263, 350
Sse9I AATT 1 cut(s) 385
SsiI CCGC 1 cut(s) 320
SspMI CTAG 3 cut(s) 27, 32, 239
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 168, 289
TaiI ACGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 120, 190
TasI AATT 1 cut(s) 385
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 3 cut(s) 187, 192, 315
TscAI CASTG 4 cut(s) 171, 237, 270, 372
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspRI CASTG 4 cut(s) 171, 237, 270, 372
VneI GTGCAC 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 3 cut(s) 27, 32, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.