Rroxscaffold_1G00019190

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001311
Physical Location & Seq
Reverse (-)
23415988 .. 23423344
7357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019190.1

Sequence Viewer

Length: 3210 bp
ATGAGTGATCAGGGAGAAAAGACTTGTCCTCTTTGCGCTGAGGAAATGGATTTGACAGATCAGCAATTGAAACCTTGCAAATGCGGTTATGAGATTTGTGTTTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGGTGTCCTGCATGCCGTACCCCTTATGATAAGGAAAAGATTGTAGGGGCTGCGAAGTGTGAGAGATTGGTGGCTGAAATCCATACTGAGAGAAAGAAGTCTCAGAAGACAAAAGTTAAGCCAACCACTGAAGGAAGAAAGCAGCTTAGCAGTGTGCGAGTGATTCAACGGAACCTTGTTTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCTACTGCAGCGTAAAGAATATTTTGCTCAATATGGGAAGGTTTTAAAGGTTTCTATGTCTCGGACAGCAGCTGGTGTCATTCAACAATTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAAGAGGAGGAAGCGGTTCGCTGTATTCAAAATGTACATGGGTTTCTATTGGACGGAAGATCTTTGAGGGCTTGCTTTGGTACCACAAAGTATTGTCACGCATGGCTAAGAAATGTGCCTTGCACCAATCCCGATTGTTTGTATCTGCACGAGGTTGGATGTCATGAGGATAGTTTCACTAAAGATGAAATAATTTCTGCATACACTAGGAGTAGGGTACAACAAATTACTGGTACTCTAAACCCTATGCAGCGGCGGTCAGGGAGTGTGTTGCCTCCACCACTAGATGATTACTGTAATAGCAGTTCTGCTTCTACCACAGGGCCTGTTGTTAAAAATGGTTCAAGTAATACTGGAACCCTCAGTAAAGGTTCTCCTCCAAATGGAAACTCTGGTAGATCTATTGCTCTTCCAGCTGCAGCTTCATGGGGTACGCGTGGTTCAAATTCTCAACCACCAGCTATGCAAATAATATATTCAAATGGACATACAAAACAGAAACCTGATACTGTCAGTTGCACAGCGCCATTTTCTTCGGCTGCTGTTTCTACTGGCCAGGCTTCTATAGTGCATAGCGATGCAGGAAAGAGGCCAACTTTGAATGAAGACAGTCAGACTATGCAAGCTAAAGGTAAACCAGAATCACTGAAAATTGTGAAACAACACATTAGTGTGGATAGTCAAATTGCCCTGTCGGACAATCCTGCTGCACCCGATGAAGCTCCTGCTTCTGTTAATGTTAGCAGCCAGTTATCTTGTCCACCTGCATCCAAGGACAACAATAGAGGCAGTAGTATGCAGCCAACTAGCACTGCCACCAACCATAATCGGCAGCCTTTTAGTTCCTGTCATGAAAGTGAAAGTATTGTTTCTAATGAAGAAGCCACCCAAAGCTTATGCTCTGATATATCTTTAATGAGCATTGATAGAAATTCTATGCTTGATCATTCTGGTGTAGTCAGACCTAATAATTCAGCTTCAGATAATTCGTATATTAAATCGCCTCGGGACCAAGGGTTACAACAATATTGTGCTGAACAGCCTAGAGAATCTCCTATAACAACTGAGAGAGCAGTAACAAGAGAACAATCCAACTGGTTGTCAGAGTCACAACCATTACCTAGTATATCTTCTGAGGTGGAGGAGGATGTACTATCTTTTGATAATCAAAGACTCAAGGACCCAGAAGTGAGTCGTGCGCCGTATCTGTCTAGTTTGCCCAATGCAGTCCATGTTCCAAATCACTCTAGGTCTCCGTTGCTACCTAGTGAGGGTTATGGTGCAGTTTATTCAAGTGCTGATCGCCTTTTTGTAGATAATAATATTAGGGACAGCTCACTTCTATCTTCGACCAACATTCCGGTACAATCTAATGGTTACCATGAGAATTTTGTAAGCAGCTCTTCTGGTTTAGAGAGGCCTTTGGAGCATTCATTTCTTAACCGAAATGAAAGCCTGGGGAAGCATGGTCGAAGATTCTTGGGTGATGCAGCTAATCCTGATTTCAGTAATGCTGTAGACAAGGGAGAGAGCAGCATAATCTCAAATATATTATCAATGGACTTTGACACTTGGGATGACCCAATAACATCGCCTCAAAATTTCTCCAAGTTTTTGGGTGAATCTGATAGACAGTCTGGAGCTCAGAAACATTCCAGTTCGTGGAAGGTGCCAAATAATAATCAGTCAAGATTCTCTTTTGCAAGACAGGAGGATTCTAGAAATCAGGCATTTGATCTACAGTCATCTCAGAATGTCATTGGGCGGTTGTCACAGAACCAGGCACAGAACCAAGGATTCCATCATGGCTATTCTGAAAATCGAGATTTATGTTTGGATAATTTTGGAATTGGAAATGGTTTTGCTTCTAGTACTTTTGAAGATTCTGAAAATCACTCCAACAATCTTTTAGCCTTCTCTTCTAACAAGCTTTCTGGTGAGTACTCTTGCACTTATGGGACTCTGGTCTTCTGTTGGACATTTGTTGGTGTTCGGCGTTTCTTTGCTGTCTCAGTTTCAAGGGCTCAAATCTCTGCTCCTCCGGGATTCTCTGTGCCAAGCAGGGCCCCACCTCCGGGCTTTACTTCTCAAGAGAGAGTAGAGCATGATTTTGACTCACTGTCTGGGAATCTTTTGCACGATAACTCCTCTCTGTTGAGAAATGCCTATCAACCTCAGCCCACGGGGAATATCGGTAGCTCTGTGGATATTGAGTTTATGGATCCTGCTATATTGGCAGTTGGTAAAGGGAGACTGCAAGGTGGGCTTAACAACCCTGGTGTAGATATGAGATCCAACTTCCCTTCACAGTTAAGTGCCTTTGAAAACGATGCAAGACTTCAGCTCTTGATGCAAAGATCCTTCTCCCAACAACAAAACCTTAGGTATCCTGATTTTGGGGATGGCTATTCTCATGTCAATGATAACTATGGAATGTCTTCGAGACTTTTGGATCAATCTCAGGCAAGCAATATGTCGCCTTTTGCTCAACTCTCTCTCCAACAATCCAGAAATAATCGGTCCATGTCAAATGGCCATTGGGATGGGTGGAATGAGGTTCAGGGCGGTAACACTATGGGTATGGCAGAGCTCCTGAGAAATGAGAGAGTAAATGAGAGACTAGGATACAATAAGTTCTATTCTGGTTATGAAGAATCAAAGTTTCGGATGCCCAGTTCTGGCGATCTGTATAACAGAACCTTTGGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

1069

Amino Acids

117.89

Weight (kDa)

6.04

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 9 - 61 1.6e-19 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1270
Acc36I ACCTGC 1 cut(s) 1270
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 3 cut(s) 111, 578, 2167
AccB7I CCANNNNNTGG 2 cut(s) 121, 2160
AccI GTMKAC 1 cut(s) 2016
AccII CGCG 1 cut(s) 934
AciI CCGC 7 cut(s) 84, 154, 512, 751, 754, 2263, 3063
AclWI GGATC 5 cut(s) 2714, 2727, 2784, 2850, 2958
AcoI YGGCCR 2 cut(s) 1051, 3031
AcsI RAATTY 4 cut(s) 943, 1429, 1885, 2098
AcuI CTGAAG 3 cut(s) 303, 1461, 2822
AfiI CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2572, 2573, 2894, 3176
AflIII ACRYGT 2 cut(s) 473, 932
AhdI GACNNNNNGTC 1 cut(s) 2617
AjnI CCWGG 4 cut(s) 1053, 1953, 2277, 2773
AleI CACNNNNGTG 1 cut(s) 1167
AloI GAACNNNNNNTCC 2 cut(s) 3157, 3189
Alw21I GWGCWC 2 cut(s) 2143, 3090
Alw26I GTCTC 7 cut(s) 258, 435, 1755, 2512, 2743, 2935, 3109
AlwI GGATC 5 cut(s) 2714, 2727, 2784, 2850, 2958
AlwNI CAGNNNCTG 2 cut(s) 443, 824
Ama87I CYCGRG 1 cut(s) 1503
AoxI GGCC 6 cut(s) 821, 1051, 1088, 1916, 2562, 3031
ApaI GGGCCC 1 cut(s) 2566
ApoI RAATTY 4 cut(s) 943, 1429, 1885, 2098
Asp700I GAANNNNTTC 2 cut(s) 513, 2935
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 3 cut(s) 38, 1024, 1699
AspS9I GGNCC 6 cut(s) 821, 1507, 1678, 2562, 2563, 3018
AsuC2I CCSGG 2 cut(s) 2541, 2574
AsuHPI GGTGA 3 cut(s) 1994, 2129, 2447
AvaI CYCGRG 1 cut(s) 1503
AvaII GGWCC 3 cut(s) 1507, 1678, 3018
AxyI CCTNAGG 1 cut(s) 2879
BaeGI GKGCMC 1 cut(s) 2566
BalI TGGCCA 2 cut(s) 1053, 3033
BamHI GGATCC 1 cut(s) 2719
BanI GGYRCC 3 cut(s) 111, 578, 2167
BanII GRGCYC 4 cut(s) 2143, 2524, 2566, 3090
BauI CACGAG 1 cut(s) 647
BbsI GAAGAC 4 cut(s) 266, 1110, 2458, 2928
Bbv12I GWGCWC 2 cut(s) 2143, 3090
BbvCI CCTCAGC 2 cut(s) 39, 2673
BccI CCATC 3 cut(s) 2307, 2894, 3035
BceAI ACGGC 2 cut(s) 153, 1684
BciT130I CCWGG 4 cut(s) 1055, 1955, 2279, 2775
BciVI GTATCC 2 cut(s) 2895, 3116
BclI TGATCA 2 cut(s) 7, 1441
BcnI CCSGG 2 cut(s) 2541, 2574
BcoDI GTCTC 7 cut(s) 258, 435, 1755, 2512, 2743, 2935, 3109
BfmI CTRYAG 5 cut(s) 377, 915, 1062, 2013, 2237
BfoI RGCGCY 1 cut(s) 1025
BfuAI ACCTGC 1 cut(s) 1270
BfuI GTATCC 2 cut(s) 2895, 3116
BglII AGATCT 3 cut(s) 370, 557, 896
BlpI GCTNAGC 1 cut(s) 299
BmcAI AGTACT 2 cut(s) 2371, 2441
Bme1390I CCNGG 6 cut(s) 1055, 1955, 2279, 2541, 2574, 2775
Bme18I GGWCC 3 cut(s) 1507, 1678, 3018
BmeRI GACNNNNNGTC 1 cut(s) 2617
BmeT110I CYCGRG 1 cut(s) 1503
BmgT120I GGNCC 6 cut(s) 821, 1507, 1678, 2562, 2563, 3018
BmrFI CCNGG 6 cut(s) 1055, 1955, 2279, 2541, 2574, 2775
BmrI ACTGGG 1 cut(s) 3165
BmsI GCATC 6 cut(s) 1066, 1274, 1975, 2818, 2838, 3156
BmuI ACTGGG 1 cut(s) 3165
BoxI GACNNNNGTC 1 cut(s) 2462
BpiI GAAGAC 4 cut(s) 266, 1110, 2458, 2928
BpmI CTGGAG 1 cut(s) 2157
Bpu10I CCTNAGC 2 cut(s) 39, 2673
Bpu1102I GCTNAGC 1 cut(s) 299
BpuEI CTTGAG 2 cut(s) 1658, 2571
BpuMI CCSGG 2 cut(s) 2541, 2574
BsaBI GATNNNNATC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 1755
BsaJI CCNNGG 7 cut(s) 1269, 1502, 1510, 1954, 2290, 2679, 2773
BsaWI WCCGGW 1 cut(s) 1858
BsaXI ACNNNNNCTCC 4 cut(s) 2627, 2657, 2979, 3009
Bsc4I CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2572, 2573, 2894, 3176
Bse1I ACTGG 7 cut(s) 733, 856, 1054, 1246, 1598, 2154, 3171
Bse21I CCTNAGG 1 cut(s) 2879
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 4 cut(s) 1055, 1955, 2279, 2775
BseDI CCNNGG 7 cut(s) 1269, 1502, 1510, 1954, 2290, 2679, 2773
BseGI GGATG 9 cut(s) 145, 662, 1265, 1651, 2080, 2905, 3046, 3171, 3210
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2572, 2573, 2894, 3176
BseNI ACTGG 7 cut(s) 733, 856, 1054, 1246, 1598, 2154, 3171
BseRI GAGGAG 5 cut(s) 518, 864, 1655, 2526, 2635
BseSI GKGCMC 1 cut(s) 2566
BsgI GTGCAG 3 cut(s) 629, 1191, 1800
Bsh1236I CGCG 1 cut(s) 934
BshFI GGCC 6 cut(s) 823, 1053, 1090, 1918, 2564, 3033
BshNI GGYRCC 3 cut(s) 111, 578, 2167
BsiHKAI GWGCWC 2 cut(s) 2143, 3090
BsiHKCI CYCGRG 1 cut(s) 1503
BsiSI CCGG 3 cut(s) 1859, 2540, 2573
BslFI GGGAC 3 cut(s) 1520, 1841, 2470
BslI CCNNNNNNNGG 8 cut(s) 121, 881, 1769, 2160, 2572, 2573, 2894, 3176
BsmAI GTCTC 7 cut(s) 258, 435, 1755, 2512, 2743, 2935, 3109
BsmFI GGGAC 3 cut(s) 1520, 1841, 2470
BsmI GAATGC 1 cut(s) 1927
BsnI GGCC 6 cut(s) 823, 1053, 1090, 1918, 2564, 3033
Bso31I GGTCTC 1 cut(s) 1755
BsoBI CYCGRG 1 cut(s) 1503
Bsp120I GGGCCC 1 cut(s) 2562
Bsp1286I GDGCHC 4 cut(s) 2143, 2524, 2566, 3090
Bsp1407I TGTACA 1 cut(s) 532
Bsp1720I GCTNAGC 1 cut(s) 299
BspACI CCGC 7 cut(s) 84, 154, 512, 751, 754, 2263, 3063
BspANI GGCC 6 cut(s) 823, 1053, 1090, 1918, 2564, 3033
BspFNI CGCG 1 cut(s) 934
BspHI TCATGA 2 cut(s) 661, 1348
BspMAI CTGCAG 2 cut(s) 381, 919
BspMI ACCTGC 1 cut(s) 1270
BspPI GGATC 5 cut(s) 2714, 2727, 2784, 2850, 2958
BspQI GCTCTTC 2 cut(s) 912, 1906
BspT107I GGYRCC 3 cut(s) 111, 578, 2167
BspTNI GGTCTC 1 cut(s) 1755
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 7 cut(s) 733, 856, 1054, 1246, 1598, 2154, 3171
BssECI CCNNGG 7 cut(s) 1269, 1502, 1510, 1954, 2290, 2679, 2773
BssSI CACGAG 1 cut(s) 647
BssT1I CCWWGG 3 cut(s) 1269, 1510, 2290
Bst2BI CACGAG 1 cut(s) 647
Bst2UI CCWGG 4 cut(s) 1055, 1955, 2279, 2775
Bst4CI ACNGT 7 cut(s) 794, 1009, 1109, 2133, 2241, 2619, 2808
Bst6I CTCTTC 3 cut(s) 912, 1906, 2422
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 166, 571, 1122, 2965
BstDSI CCRYGG 1 cut(s) 2679
BstEII GGTNACC 1 cut(s) 1874
BstF5I GGATG 9 cut(s) 145, 662, 1265, 1651, 2080, 2905, 3046, 3171, 3210
BstFNI CGCG 1 cut(s) 934
BstH2I RGCGCY 1 cut(s) 1025
BstHHI GCGC 3 cut(s) 38, 1024, 1699
BstMAI GTCTC 7 cut(s) 258, 435, 1755, 2512, 2743, 2935, 3109
BstMWI GCNNNNNNNGC 5 cut(s) 911, 1924, 2732, 2761, 2848
BstNI CCWGG 4 cut(s) 1055, 1955, 2279, 2775
BstNSI RCATGY 2 cut(s) 168, 477
BstPAI GACNNNNGTC 1 cut(s) 2462
BstPI GGTNACC 1 cut(s) 1874
BstSCI CCNGG 6 cut(s) 1053, 1953, 2277, 2539, 2572, 2773
BstSFI CTRYAG 5 cut(s) 377, 915, 1062, 2013, 2237
BstSLI GKGCMC 1 cut(s) 2566
BstUI CGCG 1 cut(s) 934
BstV2I GAAGAC 4 cut(s) 266, 1110, 2458, 2928
BstX2I RGATCY 6 cut(s) 370, 557, 896, 2719, 2789, 2855
BstXI CCANNNNNNTGG 2 cut(s) 2113, 3041
BstYI RGATCY 6 cut(s) 370, 557, 896, 2719, 2789, 2855
Bsu36I CCTNAGG 1 cut(s) 2879
BsuI GTATCC 2 cut(s) 2895, 3116
BsuRI GGCC 6 cut(s) 823, 1053, 1090, 1918, 2564, 3033
BtgI CCRYGG 1 cut(s) 2679
BtgZI GCGATG 2 cut(s) 1089, 2073
BtsCI GGATG 9 cut(s) 145, 662, 1265, 1651, 2080, 2905, 3046, 3171, 3210
BtsI GCAGTG 2 cut(s) 310, 1308
BtsIMutI CAGTG 6 cut(s) 144, 279, 310, 1142, 1308, 2615
BveI ACCTGC 1 cut(s) 1270
Cac8I GCNNGC 4 cut(s) 166, 571, 1122, 2965
CaiI CAGNNNCTG 2 cut(s) 443, 824
CciI TCATGA 2 cut(s) 661, 1348
CfoI GCGC 3 cut(s) 38, 1024, 1699
Cfr13I GGNCC 6 cut(s) 821, 1507, 1678, 2562, 2563, 3018
DraI TTTAAA 1 cut(s) 417
DriI GACNNNNNGTC 1 cut(s) 2617
EaeI YGGCCR 2 cut(s) 1051, 3031
Eam1104I CTCTTC 3 cut(s) 912, 1906, 2422
Eam1105I GACNNNNNGTC 1 cut(s) 2617
EarI CTCTTC 3 cut(s) 912, 1906, 2422
Ecl136II GAGCTC 2 cut(s) 2141, 3088
Eco130I CCWWGG 3 cut(s) 1269, 1510, 2290
Eco147I AGGCCT 1 cut(s) 1918
Eco24I GRGCYC 4 cut(s) 2143, 2524, 2566, 3090
Eco31I GGTCTC 1 cut(s) 1755
Eco47I GGWCC 3 cut(s) 1507, 1678, 3018
Eco53kI GAGCTC 2 cut(s) 2141, 3088
Eco57I CTGAAG 3 cut(s) 303, 1461, 2822
Eco81I CCTNAGG 1 cut(s) 2879
Eco88I CYCGRG 1 cut(s) 1503
Eco91I GGTNACC 1 cut(s) 1874
EcoICRI GAGCTC 2 cut(s) 2141, 3088
EcoO109I RGGNCCY 4 cut(s) 821, 1678, 2562, 2563
EcoO65I GGTNACC 1 cut(s) 1874
EcoRII CCWGG 4 cut(s) 1053, 1953, 2277, 2773
EcoT14I CCWWGG 3 cut(s) 1269, 1510, 2290
EcoT38I GRGCYC 4 cut(s) 2143, 2524, 2566, 3090
ErhI CCWWGG 3 cut(s) 1269, 1510, 2290
FalI AAGNNNNNCTT 6 cut(s) 1885, 1917, 2179, 2211, 2748, 2780
FaqI GGGAC 3 cut(s) 1520, 1841, 2470
FbaI TGATCA 2 cut(s) 7, 1441
FblI GTMKAC 1 cut(s) 2016
FokI GGATG 8 cut(s) 152, 669, 1252, 1658, 2087, 2912, 3053, 3178
FriOI GRGCYC 4 cut(s) 2143, 2524, 2566, 3090
GlaI GCGC 3 cut(s) 37, 1023, 1698
GsuI CTGGAG 1 cut(s) 2157
HaeII RGCGCY 1 cut(s) 1025
HaeIII GGCC 6 cut(s) 823, 1053, 1090, 1918, 2564, 3033
HapII CCGG 3 cut(s) 1859, 2540, 2573
HhaI GCGC 3 cut(s) 38, 1024, 1699
Hin6I GCGC 3 cut(s) 36, 1022, 1697
HinP1I GCGC 3 cut(s) 36, 1022, 1697
HindIII AAGCTT 2 cut(s) 1390, 2426
HpaII CCGG 3 cut(s) 1859, 2540, 2573
HphI GGTGA 3 cut(s) 1994, 2129, 2447
Hpy166II GTNNAC 4 cut(s) 334, 1133, 1259, 2017
Hpy8I GTNNAC 4 cut(s) 334, 1133, 1259, 2017
HpyAV CCTTC 7 cut(s) 130, 278, 403, 2158, 2422, 2811, 2869
HpyCH4III ACNGT 7 cut(s) 794, 1009, 1109, 2133, 2241, 2619, 2808
HpyF10VI GCNNNNNNNGC 5 cut(s) 911, 1924, 2732, 2761, 2848
HspAI GCGC 3 cut(s) 36, 1022, 1697
KpnI GGTACC 1 cut(s) 582
Ksp22I TGATCA 2 cut(s) 7, 1441
LguI GCTCTTC 2 cut(s) 912, 1906
LmnI GCTCC 5 cut(s) 1225, 1924, 2138, 2539, 3093
LweI GCATC 6 cut(s) 1066, 1274, 1975, 2818, 2838, 3156
MaeIII GTNAC 7 cut(s) 593, 1515, 1573, 1605, 1874, 2268, 3065
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 6 cut(s) 370, 557, 896, 2719, 2789, 2855
MhlI GDGCHC 4 cut(s) 2143, 2524, 2566, 3090
MlsI TGGCCA 2 cut(s) 1053, 3033
MluI ACGCGT 1 cut(s) 932
MluNI TGGCCA 2 cut(s) 1053, 3033
MlyI GAGTC 5 cut(s) 1613, 1665, 1699, 2452, 2606
MmeI TCCRAC 7 cut(s) 634, 1173, 1614, 2421, 2453, 2817, 3022
Mox20I TGGCCA 2 cut(s) 1053, 3033
MroXI GAANNNNTTC 2 cut(s) 513, 2935
MscI TGGCCA 2 cut(s) 1053, 3033
MslI CAYNNNNRTG 7 cut(s) 1074, 1167, 1169, 1353, 1449, 2916, 3039
Msp20I TGGCCA 2 cut(s) 1053, 3033
MspA1I CMGCKG 3 cut(s) 443, 751, 914
MspI CCGG 3 cut(s) 1859, 2540, 2573
MspR9I CCNGG 6 cut(s) 1055, 1955, 2279, 2541, 2574, 2775
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 1927
MvaI CCWGG 4 cut(s) 1055, 1955, 2279, 2775
MvnI CGCG 1 cut(s) 934
MwoI GCNNNNNNNGC 5 cut(s) 911, 1924, 2732, 2761, 2848
NciI CCSGG 2 cut(s) 2541, 2574
NmuCI GTSAC 3 cut(s) 593, 1605, 2268
NspI RCATGY 2 cut(s) 168, 477
OliI CACNNNNGTG 1 cut(s) 1167
PaeI GCATGC 1 cut(s) 168
PagI TCATGA 2 cut(s) 661, 1348
PaqCI CACCTGC 1 cut(s) 1270
PceI AGGCCT 1 cut(s) 1918
PciI ACATGT 1 cut(s) 473
PciSI GCTCTTC 2 cut(s) 912, 1906
PctI GAATGC 1 cut(s) 1927
PdmI GAANNNNTTC 2 cut(s) 513, 2935
PflMI CCANNNNNTGG 2 cut(s) 121, 2160
PfoI TCCNGGA 1 cut(s) 2539
PleI GAGTC 5 cut(s) 1612, 1665, 1698, 2452, 2606
PpsI GAGTC 5 cut(s) 1612, 1665, 1698, 2452, 2606
PpuMI RGGWCCY 1 cut(s) 1678
PscI ACATGT 1 cut(s) 473
PshAI GACNNNNGTC 1 cut(s) 2462
Psp124BI GAGCTC 2 cut(s) 2143, 3090
Psp5II RGGWCCY 1 cut(s) 1678
Psp6I CCWGG 4 cut(s) 1053, 1953, 2277, 2773
PspEI GGTNACC 1 cut(s) 1874
PspGI CCWGG 4 cut(s) 1053, 1953, 2277, 2773
PspOMI GGGCCC 1 cut(s) 2562
PspPI GGNCC 6 cut(s) 821, 1507, 1678, 2562, 2563, 3018
PspPPI RGGWCCY 1 cut(s) 1678
PsrI GAACNNNNNNTAC 6 cut(s) 317, 349, 787, 819, 922, 954
PstI CTGCAG 2 cut(s) 381, 919
PstNI CAGNNNCTG 2 cut(s) 443, 824
PsuI RGATCY 6 cut(s) 370, 557, 896, 2719, 2789, 2855
PvuII CAGCTG 2 cut(s) 443, 914
RseI CAYNNNNRTG 7 cut(s) 1074, 1167, 1169, 1353, 1449, 2916, 3039
SacI GAGCTC 2 cut(s) 2143, 3090
SapI GCTCTTC 2 cut(s) 912, 1906
Sau96I GGNCC 6 cut(s) 821, 1507, 1678, 2562, 2563, 3018
ScaI AGTACT 2 cut(s) 2371, 2441
SchI GAGTC 5 cut(s) 1613, 1665, 1699, 2452, 2606
ScrFI CCNGG 6 cut(s) 1055, 1955, 2279, 2541, 2574, 2775
SduI GDGCHC 4 cut(s) 2143, 2524, 2566, 3090
SfaNI GCATC 6 cut(s) 1066, 1274, 1975, 2818, 2838, 3156
SfcI CTRYAG 5 cut(s) 377, 915, 1062, 2013, 2237
SinI GGWCC 3 cut(s) 1507, 1678, 3018
SmiMI CAYNNNNRTG 7 cut(s) 1074, 1167, 1169, 1353, 1449, 2916, 3039
SmlI CTYRAG 2 cut(s) 1673, 2586
SmoI CTYRAG 2 cut(s) 1673, 2586
SphI GCATGC 1 cut(s) 168
SseBI AGGCCT 1 cut(s) 1918
SsiI CCGC 7 cut(s) 84, 154, 512, 751, 754, 2263, 3063
SspI AATATT 3 cut(s) 392, 1526, 1822
SstI GAGCTC 2 cut(s) 2143, 3090
StuI AGGCCT 1 cut(s) 1918
StyD4I CCNGG 6 cut(s) 1053, 1953, 2277, 2539, 2572, 2773
StyI CCWWGG 3 cut(s) 1269, 1510, 2290
TaaI ACNGT 7 cut(s) 794, 1009, 1109, 2133, 2241, 2619, 2808
TaqI TCGA 4 cut(s) 1847, 1969, 2320, 2939
TaqII GACCGA 1 cut(s) 3006
TatI WGTACW 4 cut(s) 532, 1648, 2369, 2439
TauI GCSGC 1 cut(s) 754
TscAI CASTG 6 cut(s) 151, 286, 310, 1149, 1315, 2622
TseFI GTSAC 3 cut(s) 593, 1605, 2268
Tsp45I GTSAC 3 cut(s) 593, 1605, 2268
TspGWI ACGGA 3 cut(s) 337, 567, 1743
TspRI CASTG 6 cut(s) 151, 286, 310, 1149, 1315, 2622
Van91I CCANNNNNTGG 2 cut(s) 121, 2160
VpaK11BI GGWCC 3 cut(s) 1507, 1678, 3018
XapI RAATTY 4 cut(s) 943, 1429, 1885, 2098
XbaI TCTAGA 1 cut(s) 2216
XceI RCATGY 2 cut(s) 168, 477
XmiI GTMKAC 1 cut(s) 2016
XmnI GAANNNNTTC 2 cut(s) 513, 2935
ZrmI AGTACT 2 cut(s) 2371, 2441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.